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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/trinityrnaseq">Debian Med / trinityrnaseq</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/commit/e6bd23d0d1b8bfc8d59214e3f2753f254a971ade">e6bd23d0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-02-17T07:53:33-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.6.5+dfsg</pre>
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<h4>29 changed files:</h4>
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<a href="#033cacac43f13c0f6a94f8284562d7e75d43154b">
Analysis/DifferentialExpression/GOplot.Rscript
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<a href="#a2ac7a4ca781b1d4e8ff9060dc7592e28a77a2fc">
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Analysis/DifferentialExpression/plot_log2FC_hist.Rscript
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<a href="#df7aafbd94c515703261a7548f9be2922957ff0b">
Analysis/DifferentialExpression/rename_matrix_feature_identifiers.pl
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<a href="#514f512292c05a5ef3bd2c81bc2976e7c705842e">
Analysis/DifferentialExpression/run_DE_analysis.pl
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<a href="#9d7d66f338f0fe86ecd2ae542ce0703b0e1e5aaa">
Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
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Analysis/SuperTranscripts/AllelicVariants/util/clean_bam.pl
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<a href="#03e88c709aa4aed8f1aa1a413a6424ca2b0d8228">
Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
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<a href="#0c138990846c52c002f77f524cf63e8385cad532">
Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
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Analysis/SuperTranscripts/_misc/aln_before_after.pl
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Analysis/SuperTranscripts/pylib/Compact_graph_partial.py
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Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
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Analysis/SuperTranscripts/pylib/DP_matrix.py
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Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py
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Analysis/SuperTranscripts/pylib/GraphCycleException.py
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Analysis/SuperTranscripts/pylib/Node_alignment.py
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Analysis/SuperTranscripts/pylib/Node_path.py
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Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
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Analysis/SuperTranscripts/pylib/TGLOBALS.py
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Analysis/SuperTranscripts/pylib/TGraph.py
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Analysis/SuperTranscripts/pylib/TNode.py
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<a href="#c6773c37bd970c8497fa49a0fcb17f1d89d8d79a">
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Analysis/SuperTranscripts/pylib/Topological_sort.py
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Analysis/SuperTranscripts/pylib/Trinity_fasta_parser.py
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Analysis/SuperTranscripts/pylib/Trinity_util.py
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<a href="#c0b8bef74be775dc8d6abf3f0d2273255561b3b9">
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Analysis/SuperTranscripts/pylib/__init__.py
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<a href="#d743efa701c242b34391688ec2e3956cbb09c7ef">
Butterfly/src/src/TransAssembly_allProbPaths.java
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<a href="#36238d5fa26683466193f61b8d724919bec12681">
Changelog.txt
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<a href="#a2bba8b9877874f1335144abc52615215460c611">
Chrysalis/Makefile
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<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<a href="#00df059b619f5f1b41c7a8f9ad61a417ab181996">
PyLib/Pipeliner.py
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