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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/trinityrnaseq">Debian Med / trinityrnaseq</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/commit/e6bd23d0d1b8bfc8d59214e3f2753f254a971ade">e6bd23d0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-02-17T07:53:33-08:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.6.5+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/commit/8e83b35d1c972663d2d982df2efce54047c3cf3d">8e83b35d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-03-28T07:11:50-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix merge error
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/commit/6cd5e00e76a1cb92012f3187ad63bd7538152002">6cd5e00e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-03-28T07:20:13-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove hpc_conf from docs list
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/commit/bcfbd8c4385ecc9bb47579ca2ca5eeb021868374">bcfbd8c4</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-03-28T08:08:29-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">find new upstream release
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/commit/a7e74199f56cb07688560b2a148b7bedf8709d36">a7e74199</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-03-28T08:15:43-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.6.6+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/commit/8570d63eca3ca0443becf3b2522a9a5f351202e7">8570d63e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-03-28T08:18:52-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.6.6+dfsg'
Update to upstream version '2.6.6+dfsg'
with Debian dir 57da8dad63cc191474b1be4d8c185e2358b5ef6e</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/commit/c21a312db40b4a6fc8ef9d36ec234f0cfdf9742b">c21a312d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-03-28T08:20:28-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">2.6.6+dfsg-1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/trinityrnaseq/commit/baf7d95721eac1adcf411a1f8fd6cf5a1c68c865">baf7d957</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-03-28T10:00:19-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">build and ship seqtk-trinity
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#c8f064a997862c81dcee2544e28c7e36e11ba0a6">
Analysis/DifferentialExpression/PtR
</a>
</li>
<li class="file-stats">
<a href="#e52347029280bac9286123e41f5fcda2bcaeb423">
Analysis/DifferentialExpression/cut_tree_into_clusters.pl
</a>
</li>
<li class="file-stats">
<a href="#a6987ed4b339cc5ee557023874f52017746a4be0">
Analysis/DifferentialExpression/define_clusters_by_cutting_tree.pl
</a>
</li>
<li class="file-stats">
<a href="#66bbe2abdb2d33ef64aa9ca434651d02adb666cc">
Analysis/DifferentialExpression/diff_expr_analysis_to_heatmap_html.pl
</a>
</li>
<li class="file-stats">
<a href="#e776cb8578b052cd3514dc0d7cc9625787081749">
Analysis/DifferentialExpression/matrix_to_gene_plots.pl
</a>
</li>
<li class="file-stats">
<a href="#24ba798db8803195116b501478f73053bc674977">
Analysis/DifferentialExpression/plot_expression_patterns.pl
</a>
</li>
<li class="file-stats">
<a href="#9bce05b92ddbc861ae3dd4d44f664cd05240bf0a">
Analysis/DifferentialExpression/remove_batch_effects_from_count_matrix.pl
</a>
</li>
<li class="file-stats">
<a href="#d80437fc49401c50f28d4056f4c98bb3696a5b4b">
Analysis/DifferentialExpression/replicates_to_sample_averages_matrix.pl
</a>
</li>
<li class="file-stats">
<a href="#514f512292c05a5ef3bd2c81bc2976e7c705842e">
Analysis/DifferentialExpression/run_DE_analysis.pl
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</li>
<li class="file-stats">
<a href="#802d0cf48e06523644087b90a072da656ca7e334">
Analysis/DifferentialExpression/run_GOseq.pl
</a>
</li>
<li class="file-stats">
<a href="#26c11e1eb5aaf1be92c05883cfe693d0ffa42f3a">
Analysis/DifferentialExpression/run_TMM_normalization_write_FPKM_matrix.pl
</a>
</li>
<li class="file-stats">
<a href="#af8b71cfbf5d23db5853c5ad058816f3792692ef">
Analysis/FL_reconstruction_analysis/tier_gene_trans_alignments.tiers_to_boxplot.pl
</a>
</li>
<li class="file-stats">
<a href="#9d7d66f338f0fe86ecd2ae542ce0703b0e1e5aaa">
Analysis/SuperTranscripts/AllelicVariants/run_variant_calling.py
</a>
</li>
<li class="file-stats">
<a href="#03e88c709aa4aed8f1aa1a413a6424ca2b0d8228">
Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
</a>
</li>
<li class="file-stats">
<a href="#0c138990846c52c002f77f524cf63e8385cad532">
Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py
</a>
</li>
<li class="file-stats">
<a href="#45e7c361fd335bb36f5c0c4c8c7638627b9d0134">
Analysis/SuperTranscripts/pylib/Compact_graph_whole.py
</a>
</li>
<li class="file-stats">
<a href="#f906cade8d1e7d308a3426f862f9c397bfe32b13">
Analysis/SuperTranscripts/pylib/Gene_splice_modeler.py
</a>
</li>
<li class="file-stats">
<a href="#e76d62ce20154547ef88bc96f2abaa422a27cd3a">
Analysis/SuperTranscripts/pylib/Node_path.py
</a>
</li>
<li class="file-stats">
<a href="#b3de920792ebcd7b3fcb3db8018aad9120bc9ad3">
Analysis/SuperTranscripts/pylib/Splice_model_refiner.py
</a>
</li>
<li class="file-stats">
<a href="#3baa3cda7567ab3cb0feca6958db153827c68c24">
Analysis/SuperTranscripts/pylib/TGraph.py
</a>
</li>
<li class="file-stats">
<a href="#36238d5fa26683466193f61b8d724919bec12681">
Changelog.txt
</a>
</li>
<li class="file-stats">
<a href="#0edca75ce3c841ce3b7225da78da359cc40f8bd2">
<span class="deleted-file">
−
Docker/Changelog.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#56cd058343dc500d70fb6c2c4aac98dc5da7cbe5">
Docker/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#bbb101bc2f90c8750e858f6e53300be082686b61">
Docker/VERSION.txt
</a>
</li>
<li class="file-stats">
<a href="#fe1f3f0432df49e752b342651a4544704be40e18">
Trinity
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#ceca267677d809d3703205a93d3d29a26b021c1d">
debian/patches/adjust-trimmomatic-adapters-path
</a>
</li>
<li class="file-stats">
<a href="#2f41015e2a5973d28455283d554d07f6e9cf3e26">
debian/patches/disable-version-check
</a>
</li>
<li class="file-stats">
<a href="#9c3921224f13bb64ee0668e34e9072c2d81fed1e">
debian/patches/fix_system_paths
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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