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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/bamtools">Debian Med / bamtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/commit/5f3af98db5412899d28943f14604682acf1e8e07">5f3af98d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-04-03T03:38:02-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">multi-arch hints; restoration of includes to -dev
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/commit/42189b21fe5ab8e0b9d75172dcbd731fcffca4f8">42189b21</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-04-03T04:18:50-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build the shared library
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/commit/0724cc71ad543a531235cc9a6b7a0be43015d99a">0724cc71</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-04-03T04:48:05-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">drop patches/0002-support-out-of-source-build.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/commit/e078f687aa0fce3e232c4eaef9f263c05a5a7657">e078f687</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-04-03T05:20:13-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Match upstream's soname change
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bamtools/commit/c97f17d64c63d658325a58779d9ca927084d9d18">c97f17d6</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2018-04-03T05:30:41-07:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge remote-tracking branch 'origin/master'
</pre>
</li>
</ul>
<h4>9 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#2a209cfd97b52a54f3217c7873a71564bc0d6d68">
debian/bamtools.manpages
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#ea41d1dc1607334eab02f3c0775b7ef37a071e8d">
debian/libbamtools-dev.install
</a>
</li>
<li class="file-stats">
<a href="#1aa7dd52fefc80f27d9d7d0f9d66852f925ae72c">
<span class="deleted-file">
−
debian/libbamtools2.4.0.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#5123801a967c17200115c5452426253a25bd9f36">
<span class="new-file">
+
debian/libbamtools2.5.1.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#e393e103f6820a634ae3a102c8b7e3478db766a3">
<span class="deleted-file">
−
debian/patches/0002-support-out-of-source-build.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="2a209cfd97b52a54f3217c7873a71564bc0d6d68">
<a href="https://salsa.debian.org/med-team/bamtools/compare/fb6bf98f870e5b4c57e2ccdeb7e9de10132de6f2...c97f17d64c63d658325a58779d9ca927084d9d18#2a209cfd97b52a54f3217c7873a71564bc0d6d68"><strong>debian/bamtools.manpages</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">debian/<span class="idiff left right">*</span>.1</span></pre>
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/<span class="idiff left right">bamtools</span>.1</span></pre>
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</li>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bamtools/compare/fb6bf98f870e5b4c57e2ccdeb7e9de10132de6f2...c97f17d64c63d658325a58779d9ca927084d9d18#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">bamtools (2.5.1+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Move /usr/includes to -dev from libbamtools2.4.0</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * debian/control: add Multi-Arch hints and remove unneeded ${devlibs:Depends}</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Build the shared library.</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * drop 0002-support-out-of-source-build patch, as this was fixed differently</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> upstream</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Match upstream's soname change</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 03 Apr 2018 04:18:02 -0700</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">bamtools (2.5.1+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/bamtools/compare/fb6bf98f870e5b4c57e2ccdeb7e9de10132de6f2...c97f17d64c63d658325a58779d9ca927084d9d18#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -53,9 +53,9 @@ Description: toolkit for manipulating BAM (genome alignment) files</td>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"></span>
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54
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">Package: libbamtools-dev</span>
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55
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<td class="diff-line-num new_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
55
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext">Architecture: any</span>
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<td class="diff-line-num new old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">Multi-Arch: same</span>
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<td class="diff-line-num old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
56
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57
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext">Section: libdevel</span>
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<td class="diff-line-num old old_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
57
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<td class="diff-line-num new_line old" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext">Depends: libbamtools2.4.0 (= ${binary:Version}),</span>
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<td class="diff-line-num old old_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
58
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<td class="diff-line-num new_line old" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> ${devlibs:Depends},</span>
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<td class="diff-line-num new old_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">Depends: libbamtools2.5.1 (= ${binary:Version}),</span>
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<td class="diff-line-num old_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
59
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<td class="diff-line-num new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
59
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> ${misc:Depends}</span>
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<td class="diff-line-num old_line" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
60
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<td class="diff-line-num new_line" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
60
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext">Suggests: libbamtools-doc (= ${binary:Version})</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
61
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<td class="diff-line-num new_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
61
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext">Description: C++ API for manipulating BAM (genome alignment) files</span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -70,8 +70,9 @@ Description: C++ API for manipulating BAM (genome alignment) files</td>
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<td class="diff-line-num old_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
70
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70
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> .</span>
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<td class="diff-line-num old_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
71
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<td class="diff-line-num new_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
71
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> This is the developers API package.</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
72
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<td class="diff-line-num new_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
72
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
73
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<td class="diff-line-num new_line old" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext">Package: libbamtools2.<span class="idiff left right">4.0</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext">Package: libbamtools2.<span class="idiff left right">5.1</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
74
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<td class="diff-line-num new_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
74
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext">Architecture: any</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext">Multi-Arch: same</span>
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<td class="diff-line-num old_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
75
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<td class="diff-line-num new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
76
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext">Section: libs</span>
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<td class="diff-line-num old_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
76
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<td class="diff-line-num new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
77
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<td class="diff-line-num old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
77
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<td class="diff-line-num new_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> ${misc:Depends}</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -89,6 +90,7 @@ Description: dynamic library for manipulating BAM (genome alignment) files</td>
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<td class="diff-line-num old_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
89
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<td class="diff-line-num new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
90
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<td class="diff-line-num new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
91
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext">Package: libbamtools-doc</span>
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<td class="diff-line-num old_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
91
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<td class="diff-line-num new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
92
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext">Architecture: all</span>
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<td class="diff-line-num new old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext">Multi-Arch: foreign</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
92
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<td class="diff-line-num new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext">Section: doc</span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext">Depends: ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext">Breaks: libbamtools-dev (<< 2.4.0+dsfg-6)</span>
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<a href="https://salsa.debian.org/med-team/bamtools/compare/fb6bf98f870e5b4c57e2ccdeb7e9de10132de6f2...c97f17d64c63d658325a58779d9ca927084d9d18#ea41d1dc1607334eab02f3c0775b7ef37a071e8d"><strong>debian/libbamtools-dev.install</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tmp</span><span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/*/*</span><span class="nx">so</span></span>
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1
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">cmake</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tmp</span><span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">include</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">include</span><span class="o" style="font-weight: 600;">/</span></span></pre>
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<a href="https://salsa.debian.org/med-team/bamtools/compare/fb6bf98f870e5b4c57e2ccdeb7e9de10132de6f2...c97f17d64c63d658325a58779d9ca927084d9d18#1aa7dd52fefc80f27d9d7d0f9d66852f925ae72c"><strong>debian/libbamtools2.4.0.install</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tmp</span><span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">include</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">include</span><span class="o" style="font-weight: 600;">/</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tmp</span><span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span></span></pre>
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<a href="https://salsa.debian.org/med-team/bamtools/compare/fb6bf98f870e5b4c57e2ccdeb7e9de10132de6f2...c97f17d64c63d658325a58779d9ca927084d9d18#5123801a967c17200115c5452426253a25bd9f36"><strong>debian/libbamtools2.5.1.install</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">debian</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tmp</span><span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/*/</span><span class="nx">libbamtools</span><span class="o" style="font-weight: 600;">.</span><span class="nx">so</span><span class="o" style="font-weight: 600;">.</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span></span></pre>
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<li id="e393e103f6820a634ae3a102c8b7e3478db766a3">
<a href="https://salsa.debian.org/med-team/bamtools/compare/fb6bf98f870e5b4c57e2ccdeb7e9de10132de6f2...c97f17d64c63d658325a58779d9ca927084d9d18#e393e103f6820a634ae3a102c8b7e3478db766a3"><strong>debian/patches/0002-support-out-of-source-build.patch</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff">From: Dominique Belhachemi <domibel@debian.org></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff">Date: Fri, 21 Sep 2012 11:16:28 -0400</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff">Subject: support out-of-source build</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff">Forwarded: https://github.com/pezmaster31/bamtools/pull/117</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff">---</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"> CMakeLists.txt | 5 +++--</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"> src/ExportHeader.cmake | 2 +-</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"> src/toolkit/CMakeLists.txt | 2 +-</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"> 3 files changed, 5 insertions(+), 4 deletions(-)</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/CMakeLists.txt</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/CMakeLists.txt</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -94,6 +94,7 @@ endif()</span></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> # add our includes root path</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> include_directories( src )</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+include_directories("${CMAKE_BINARY_DIR}/include")</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"> </span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"> # list subdirectories to build in</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> add_subdirectory( src )</span></pre>
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<a href="https://salsa.debian.org/med-team/bamtools/compare/fb6bf98f870e5b4c57e2ccdeb7e9de10132de6f2...c97f17d64c63d658325a58779d9ca927084d9d18#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">doxygen-tweak</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">0001-ignore-thirdparty-and-fix-jsoncpp.patch</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">0002-support-out-of-source-build.patch</span>
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4
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">0003-remove-custom-ExportHeader-function-use-install-inst.patch</span>
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5
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">0006-Doxygen-reproducibility</span>
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6
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">0008_Cmake_Test.patch</span>
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<a href="https://salsa.debian.org/med-team/bamtools/compare/fb6bf98f870e5b4c57e2ccdeb7e9de10132de6f2...c97f17d64c63d658325a58779d9ca927084d9d18#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,6 +9,9 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+bindnow</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="make"><span class="nl">%</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="make"> dh <span class="nv" style="color: teal;">$@</span></span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="make"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="make"><span class="nl">override_dh_auto_configure-arch</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="make"> dh_auto_configure <span class="nt" style="color: navy;">--arch</span> <span class="nt" style="color: navy;">--</span> <span class="nt" style="color: navy;">-DBUILD_SHARED_LIBS</span><span class="o" style="font-weight: 600;">=</span>on</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="make"><span class="nl">override_dh_auto_configure-indep</span><span class="o" style="font-weight: 600;">:</span></span>
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13
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="make"></span>
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14
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="make"><span class="nl">override_dh_auto_test-indep</span><span class="o" style="font-weight: 600;">:</span></span>
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