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<h3>
Julien Y. Dutheil pushed to branch master
at <a href="https://salsa.debian.org/med-team/libbpp-phyl-omics">Debian Med / libbpp-phyl-omics</a>
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<h4>
Commits:
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<li>
<strong><a href="https://salsa.debian.org/med-team/libbpp-phyl-omics/commit/304624126151f5cecd0b43f5928a70aab0dd09c1">30462412</a></strong>
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<span>by Julien Y. Dutheil</span>
<i>at 2018-04-07T22:22:13+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Symbols for amd64 arch only.
Also restored CMakeList.txt file.
Updated dates in copyright file.
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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debian/copyright
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9a2aa4db38d3115ed60da621e012c0efc0172aae">
<a href="https://salsa.debian.org/med-team/libbpp-phyl-omics/commit/304624126151f5cecd0b43f5928a70aab0dd09c1#9a2aa4db38d3115ed60da621e012c0efc0172aae"><strong>CMakeLists.txt</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +9,7 @@ cmake_minimum_required (VERSION 2.8.11)</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="cmake"><span class="nb" style="color: #0086b3;">project</span> <span class="p">(</span>bpp-phyl-omics CXX<span class="p">)</span></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="cmake"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"># Compile options</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="cmake"><span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right">#set (CMAKE_CXX_FLAGS "-std=c++11 -g</span>")</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="cmake"><span class="nb" style="color: #0086b3;"><span class="idiff left">set</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="idiff">CMAKE_CXX_FLAGS </span><span class="s2" style="color: #d14;"><span class="idiff right">"-std=c++11 -Wall -Weffc++ -Wshadow -Wconversion</span>"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="cmake"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="cmake"><span class="nf" style="color: #900; font-weight: 600;">IF</span><span class="p">(</span>NOT CMAKE_BUILD_TYPE<span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="cmake"> <span class="nf" style="color: #900; font-weight: 600;">SET</span><span class="p">(</span>CMAKE_BUILD_TYPE RelWithDebInfo CACHE STRING</span>
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<a href="https://salsa.debian.org/med-team/libbpp-phyl-omics/commit/304624126151f5cecd0b43f5928a70aab0dd09c1#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">libbpp-phyl-omics (2.4.0-2) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Julien Dutheil ]</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Provide symbols file only for amd64</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * Provide full license text of CeCILL license</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 06 Apr 2018 07:54:46 +0200</span>
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<a href="https://salsa.debian.org/med-team/libbpp-phyl-omics/commit/304624126151f5cecd0b43f5928a70aab0dd09c1#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ Upstream-Contact: Julien Yann Dutheil <julien.dutheil@univ-montp2.fr></td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Source: https://github.com/BioPP/bpp-phyl-omics/</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Copyright: 2010-201<span class="idiff left right">6</span> Julien Yann Dutheil <julien.dutheil@univ-montp2.fr></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Copyright: 2010-201<span class="idiff left right">8</span> Julien Yann Dutheil <julien.dutheil@univ-montp2.fr></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> Bio++ Development Team</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">License: CeCILL</span>
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<a href="https://salsa.debian.org/med-team/libbpp-phyl-omics/commit/304624126151f5cecd0b43f5928a70aab0dd09c1#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,6 +9,23 @@ CMAKE_EXTRA_FLAGS += -DBUILD_TESTING=OFF</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">override_dh_makeshlibs:</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">ifeq ($(DEB_BUILD_ARCH),amd64)</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> echo "Architecture amd64 is the only one where a symbols file is provided"</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">else</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> echo "Symbols file for architecture $(DEB_BUILD_ARCH) is not provided"</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> mkdir -p debian/hidesymbols</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> mv debian/*.symbols debian/hidesymbols</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> dh_makeshlibs</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">ifeq ($(DEB_BUILD_ARCH),amd64)</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> echo "dh_makeshlibs for architecture amd64 including symbols done"</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">else</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> # restore original debian/ dir to enable building twice in a row</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> mv debian/hidesymbols/*.symbols debian</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> rmdir debian/hidesymbols</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">endif</span>
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<td class="diff-line-num new old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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<td class="diff-line-num new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">override_dh_install:</span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> dh_install</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
14
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> d-shlibmove --commit \</span>
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