[Debian-med-packaging] glam2_1056-1_i386.changes is NEW
installer at ftp-master.debian.org
Tue Jan 29 15:47:03 UTC 2008
(new) glam2_1056-1.diff.gz optional science
(new) glam2_1056-1.dsc optional science
(new) glam2_1056-1_i386.deb optional science
gapped protein motifs from unaligned sequences
GLAM2 is a software package for finding motifs in sequences, typically
amino-acid or nucleotide sequences. A motif is a re-occurring sequence
pattern: typical examples are the TATA box and the CAAX prenylation motif. The
main innovation of GLAM2 is that it allows insertions and deletions in motifs.
The package includes these programs: glam2 — for discovering motifs shared by
a set of sequences; glam2scan — for finding matches, in a sequence database,
to a motif discovered by glam2; glam2format — for converting glam2 motifs to
standard alignment formats; glam2mask — for masking glam2 motifs out of
sequences, so that weaker motifs can be found; glam2-purge — for removing
highly similar members of a set of sequences.
In this package, the fast Fourier algorithm (FFT) was enabled for glam2.
If you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey
(2008) Discovering sequence motifs with arbitrary insertions and deletions,
PLoS Computational Biology (in press).
(new) glam2_1056.orig.tar.gz optional science
Changes: glam2 (1056-1) unstable; urgency=low
* Initial release (Closes: #45237)
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Announcing to debian-devel-changes at lists.debian.org
Closing bugs: 45237
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