[Debian-med-packaging] seaview_4.0-1_amd64.changes is NEW

[Archive Administrator]

(new) seaview_4.0-1.diff.gz optional non-free/science
(new) seaview_4.0-1.dsc optional non-free/science
(new) seaview_4.0-1_amd64.deb optional non-free/science
WARNING: Already present in m distribution.
Multiplatform interface for sequence alignment and phylogeny
 SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA,
 PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees.
 Alignments can be manually edited. It drives the programs Muscle or Clustal W
 for multiple sequence alignment, and also allows to use any external alignment
 algorithm able to read and write FASTA-formatted files. It computes
 phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by
 distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or
 by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic
 trees on screen or PostScript files, and allows to download sequences from
 EMBL/GenBank/UniProt using the Internet.
(new) seaview_4.0.orig.tar.gz optional non-free/science
Changes: seaview (1:4.0-1) unstable; urgency=low
 .
  * New upstream version
    - Computes and draws parsimony, distance and PhyML phylogenetic trees.
    - This new version unfortunately uses non-free files, and has therefore been
      removed from Debian, but is distributed in the ‘non-free’ section of its
      archive as a service its users.
  * debian/control:
    - Changed section to non-free/science.
    - Build-Depends on libxft-dev and libxext-dev.
    - Recommends phyml, muscle and clustalw.
    - Dropped dependency on xterm.
    - checked package conformance with Policy 3.8.1.
    - Updated description and removed reference from it.
    - Dropped build dependency on quilt.
  * debian/patches and debian/README.source removed:
    - 20-no-PDF-in-help.patch: upstream wording became true for Debian as well.
    - 21-location-of-seaview.help.patch: passing -DHELPFILENAME through
      debian/rules instead.
    - 40-seaview_align.sh-newline.patch, seaview_align-full_path.patch:
      seaview_align.sh was removed upstream.
  * debian/README.Debian deleted as well (obsolete).
  * debian/rules:
    - Makes `seaview' instead of `seaviewps' as (non-free) PDF support is not
      default anymore.
    - Indicate the location of the help file with:
      -DHELPFILENAME=\\\"/usr/share/doc/seaview/seaview.html\\\"
    - Uses `dh clean' and $(RM) macro in the clean target.
    - Uses `dh binary-arch` in the binary-arch target (created debian/docs,
      debian/seaview.examples, and debian/manpages).
    - Removed protein.mase from examples (removed upstream).
    - Removed patching facilities (no patches to apply anymore).
  * Removed `seaview_align.sh' from debian/install, as it was removed upstream.
  * debian/copyright:
    - Incremented year and version.
    - Link to the precise versions of the GNU GPL and LGPL.
    - Added the necessary disclaimers because SeaView became non-free.
  * Updated the manpage (debian/seaview.1*).
  * Registered the new help file with doc-base (debian/seaview.doc-base.help).


Override entries for your package:

Announcing to debian-devel-changes at lists.debian.org


Your package contains new components which requires manual editing of
the override file.  It is ok otherwise, so please be patient.  New
packages are usually added to the override file about once a week.

You may have gotten the distribution wrong.  You'll get warnings above
if files already exist in other distributions.