[Debian-med-packaging] Bug#577386: r-other-bio3d: FTBFS: ERROR: unable to collate files for package 'bio3d'

[Lucas Nussbaum]

Source: r-other-bio3d
Version: 1.0-7-1
Severity: serious
Tags: squeeze sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20100410 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
>  /usr/bin/fakeroot debian/rules binary
> test -x debian/rules
> dh_testroot
> dh_clean -k 
> dh_installdirs -A 
> mkdir -p "."
> dh_installdirs		usr/lib/R/site-library
> if test -f /usr/bin/xvfb-run; then 			\
> 			 xvfb-run 			\
> 				R CMD INSTALL -l /build/user-r-other-bio3d_1.0-7-1-amd64-lI2VR2/r-other-bio3d-1.0-7/debian/r-other-bio3d/usr/lib/R/site-library --clean     \
> 					 . ;	\
> 		else							\
> 			 R CMD INSTALL -l /build/user-r-other-bio3d_1.0-7-1-amd64-lI2VR2/r-other-bio3d-1.0-7/debian/r-other-bio3d/usr/lib/R/site-library 	\
> 					--clean  . ;\
> 		fi
> * installing *source* package 'bio3d' ...
> ** R
> Error in parse(outFile) : embedded nul in string: '\0'
> ERROR: unable to collate files for package 'bio3d'
> * removing '/build/user-r-other-bio3d_1.0-7-1-amd64-lI2VR2/r-other-bio3d-1.0-7/debian/r-other-bio3d/usr/lib/R/site-library/bio3d'
> make: *** [R_any_arch] Error 1

The full build log is available from:
   http://people.debian.org/~lucas/logs/2010/04/10/r-other-bio3d_1.0-7-1_lsid64.buildlog

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot.  Internet was not
accessible from the build systems.

-- 
| Lucas Nussbaum
| lucas at lucas-nussbaum.net   http://www.lucas-nussbaum.net/ |
| jabber: lucas at nussbaum.fr             GPG: 1024D/023B3F4F |