[Debian-med-packaging] [SCM] picard-tools branch, master, updated. upstream/1.24-15-g2916d9f

[Charles Plessy]

The following commit has been merged in the master branch:
commit 2916d9f3912a1ba3b91823c7cd4cfd29ff9ff7f2
Author: Charles Plessy <plessy at debian.org>
Date:   Tue Jul 6 16:52:04 2010 +0900

    Also distribute the explain_sam_flags.py script.

diff --git a/debian/control b/debian/control
index 3f60e70..183fdda 100644
--- a/debian/control
+++ b/debian/control
@@ -24,7 +24,7 @@ Package: picard-tools
 Architecture: any
 Depends: openjdk-6-jre|java-runtime, ${misc:Depends},
  libsam-java
-Suggests: r-base-core
+Suggests: python, r-base-core
 Description: Command line tools to manipulate SAM and BAM files
  SAM (Sequence Alignment/Map) format is a generic format for storing
  large nucleotide sequence alignments. Picard Tools includes these
diff --git a/debian/picard-tools.README.Debian b/debian/picard-tools.README.Debian
new file mode 100644
index 0000000..4bf8cf0
--- /dev/null
+++ b/debian/picard-tools.README.Debian
@@ -0,0 +1,8 @@
+The Python script ‘explain_sam_flags.py’ is distributed in
+‘/usr/share/picard-tools/’ as a convenience for the users, but
+the package does not depend on it. You can install the default
+Python version in Debian with the following command:
+
+apt-get install python
+
+ -- Charles Plessy <plessy at debian.org>  Tue, 06 Jul 2010 16:29:56 +0900
diff --git a/debian/picard-tools.install b/debian/picard-tools.install
index 5b681a1..66e8bf9 100644
--- a/debian/picard-tools.install
+++ b/debian/picard-tools.install
@@ -1,2 +1,3 @@
 debian/bin/picard-tools usr/bin
 dist/picard-*.jar usr/share/java
+src/scripts/explain_sam_flags.py usr/share/picard-tools

-- 
manipulate SAM and BAM files