[Debian-med-packaging] [SCM] igv branch, master, updated. upstream/1.4.2-4-gbfffebb

[Shaun Jackman]

The following commit has been merged in the master branch:
commit bfffebbd5a9fd9345b84bc7c0c4c7dd860bb8dcb
Author: Shaun Jackman <sjackman at debian.org>
Date:   Wed Jun 16 11:23:17 2010 -0700

    * src/org/broad/igv/h5/HDF5LocalWriter.java: Remove an unnecessary
    call to H5.J2C.

diff --git a/debian/patches/debian-changes-1.4.2-1 b/debian/patches/debian-changes-1.4.2-1
index be66106..e3bc352 100644
--- a/debian/patches/debian-changes-1.4.2-1
+++ b/debian/patches/debian-changes-1.4.2-1
@@ -68,6 +68,17 @@ Last-Update: <YYYY-MM-DD>
          </path>
  
          <pathconvert property="class-path" pathsep=" " dirsep="/" refid="@jars">
+--- igv-1.4.2.orig/src/org/broad/igv/h5/HDF5LocalWriter.java
++++ igv-1.4.2/src/org/broad/igv/h5/HDF5LocalWriter.java
+@@ -491,7 +491,7 @@ public class HDF5LocalWriter implements
+                 buf =
+                         new double[]{((Number) value).doubleValue()};
+             } else {
+-                dataType = H5.H5Tcopy(H5.J2C(HDF5Constants.H5T_C_S1));
++                dataType = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
+                 buf =
+                         value.toString().getBytes();
+                 H5.H5Tset_size(dataType, ((byte[]) buf).length);
 --- igv-1.4.2.orig/src/org/broad/igv/ui/util/GenericUtilities.java
 +++ igv-1.4.2/src/org/broad/igv/ui/util/GenericUtilities.java
 @@ -27,7 +27,7 @@ package org.broad.igv.ui.util;

-- 
Integrative Genomics Viewer