[Debian-med-packaging] picard-tools package

[Shaun Jackmam]

Hi Charles,

Yes, please push 1.23. Thanks. Please  add the empty lib directory to  
the upstream orig branch, which will fix your first bug.

I'll look into the second bug.

Cheers,
Shaun

On 2010-06-22, at 4:11 AM, Charles Plessy <plessy at debian.org> wrote:

> Le Tue, Jun 15, 2010 at 05:53:21PM -0700, Shaun Jackman a écrit :
>>
>> I've packaged picard-tools and checked it into git:
>> git://git.debian.org/git/debian-med/picard-tools.git
>
> Hi Shaun,
>
> I downloaded the repository with the following command:
>
> debcheckout --git-track='*' -a git://git.debian.org/git/debian-med/ 
> picard-tools.git
>
> I then installed the build dependancies with:
>
> sudo mk-build-deps -r -i
>
> But unfortunately, I can not build the picard-tools:
>
> ---------------------------------------------------------------------
> ↱picard-tools↲$ fakeroot debian/rules binary
> dh  binary
>   dh_testdir
>   dh_auto_configure
>   dh_auto_build
> Buildfile: /home/charles/debian/debian-med/picard-tools/build.xml
>
> init:
>
> set_java_home_1.5_correctly:
>
> set_java_home_1.5_to_default_java_home:
>     [echo] JAVA_HOME_1_5=${env.JAVA_HOME}
>
> set_java_home_1.5:
>
> compile-sam-jdk:
>    [mkdir] Created dir: /home/charles/debian/debian-med/picard-tools/ 
> classes
>    [javac] /home/charles/debian/debian-med/picard-tools/build.xml: 
> 96: warning: 'includeantruntime' was not set, defaulting to  
> build.sysclasspath=last; set to false for repeatable builds
>    [javac] Compiling 93 source files to /home/charles/debian/debian- 
> med/picard-tools/classes
>
> BUILD FAILED
> /home/charles/debian/debian-med/picard-tools/build.xml:96: /home/ 
> charles/debian/debian-med/picard-tools/lib does not exist.
>
> Total time: 0 seconds
> dh_auto_build: ant returned exit code 1
> make: *** [binary] Error 2
> ---------------------------------------------------------------------
>
> Trying again, after creating the lib directory:
>
> ---------------------------------------------------------------------
> ↱picard-tools↲$ mkdir /home/charles/debian/debian-med/picard- 
> tools/lib
> ↱picard-tools↲$ fakeroot debian/rules binary
> dh  binary
>   dh_auto_build
> Buildfile: /home/charles/debian/debian-med/picard-tools/build.xml
>
> init:
>
> set_java_home_1.5_correctly:
>
> set_java_home_1.5_to_default_java_home:
>     [echo] JAVA_HOME_1_5=${env.JAVA_HOME}
>
> set_java_home_1.5:
>
> compile-sam-jdk:
>    [javac] /home/charles/debian/debian-med/picard-tools/build.xml: 
> 96: warning: 'includeantruntime' was not set, defaulting to  
> build.sysclasspath=last; set to false for repeatable builds
>    [javac] Compiling 93 source files to /home/charles/debian/debian- 
> med/picard-tools/classes
>
> BUILD FAILED
> /home/charles/debian/debian-med/picard-tools/build.xml:96: Error  
> running ${env.JAVA_HOME}/bin/javac compiler
>
> Total time: 0 seconds
> dh_auto_build: ant returned exit code 1
> make: *** [binary] Error 2
> ---------------------------------------------------------------------
>
>
> By the way, I have committed version 1.23 to my local repository.  
> Shall I push it?
>
> Have a nice day,
>
> -- 
> Charles
>
> PS: I have not forgetten your suggestion to update the Debian Med  
> packaging policy,
> I just have a huge backlog…