[Debian-med-packaging] Bug#602667: samtools: FTBFS on armel

[Hector Oron]

Package: samtools
Version: 0.1.9-1
Severity: serious

Hello,

Your package fails to build with following error:
/usr/bin/make  -C . CFLAGS="-g -O2 -g -Wall -O2 -fPIC" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS=""  -C examples all
make[1]: Entering directory `/build/buildd-samtools_0.1.9-1-armel-8inJsJ/samtools-0.1.9/examples'
../samtools faidx ex1.fa
../samtools import ex1.fa.fai ex1.sam.gz ex1.bam
[sam_header_read2] 2 sequences loaded.
Parse error at line 2: CIGAR and sequence length are inconsistent
make[1]: *** [ex1.bam] Aborted
make[1]: *** Deleting file `ex1.bam'

Find full buildlog at: https://buildd.debian.org/fetch.cgi?pkg=samtools;ver=0.1.9-1;arch=armel;stamp=1288610908

-- System Information:
Debian Release: squeeze/sid
  APT prefers testing
  APT policy: (650, 'testing'), (600, 'unstable'), (1, 'experimental')
Architecture: i386 (i686)

Kernel: Linux 2.6.32-5-686 (SMP w/2 CPU cores)
Locale: LANG=es_ES.UTF-8, LC_CTYPE=es_ES.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash