[Debian-med-packaging] Build logs for r-cran-genabel_1.6-5-1_amd64.changes
Charles Plessy
plessy at debian.org
Fri Apr 1 05:21:10 UTC 2011
Le Fri, Apr 01, 2011 at 04:58:13AM +0000, Debian FTP Masters a écrit :
> r-cran-genabel_1.6-5-1_amd64.changes uploaded successfully to localhost
> along with the files:
> r-cran-genabel_1.6-5-1.dsc
> r-cran-genabel_1.6-5.orig.tar.gz
> r-cran-genabel_1.6-5-1.debian.tar.gz
> r-cran-genabel_1.6-5-1_amd64.deb
Here are the build logs.
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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sbuild (Debian sbuild) 0.62.1 (20 Mar 2011) on anx191
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? r-cran-genabel 1.6-5-1 (amd64) 01 Apr 2011 13:48 ?
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Package: r-cran-genabel
Version: 1.6-5-1
Source Version: 1.6-5-1
Distribution: unstable
Architecture: amd64
I: NOTICE: Log filtering will replace '/build/r-cran-genabel-6K6_lD' with 'BUILDDIR'
I: NOTICE: Log filtering will replace '/var/lib/schroot/mount/sid-amd64-sbuild-aad6e701-bafa-41cd-ac66-c8d23b9c182c' with 'CHROOT'
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? Update chroot ?
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Hit http://ftp.riken.jp sid InRelease
Hit http://ftp.riken.jp sid/main Sources/DiffIndex
Hit http://ftp.riken.jp sid/main amd64 Packages/DiffIndex
Hit http://ftp.riken.jp sid/main TranslationIndex
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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? Fetch source files ?
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Local sources
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r-cran-genabel_1.6-5-1.dsc exists in .; copying to chroot
Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `BUILDDIR/resolver-4N5wOD/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
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? Install core build dependencies (apt-based resolver) ?
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Installing build dependencies
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The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
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After this operation, 0 B of additional disk space will be used.
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10), r-recommended, r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, r-base-dev (>= 2.10), r-recommended, r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue
dpkg-deb: building package `sbuild-build-depends-r-cran-genabel-dummy' in `BUILDDIR/resolver-FwliHX/apt_archive/sbuild-build-depends-r-cran-genabel-dummy.deb'.
OK
Reading package lists...
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? Install r-cran-genabel build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.5 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
po-debconf r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster
r-cran-codetools r-cran-combinat r-cran-foreign r-cran-gdata r-cran-genetics
r-cran-gtools r-cran-haplo.stats r-cran-kernsmooth r-cran-lattice
r-cran-mass r-cran-matrix r-cran-mgcv r-cran-mvtnorm r-cran-nlme r-cran-nnet
r-cran-qvalue r-cran-rpart r-cran-spatial r-cran-survival r-recommended
tcl8.5 tk8.5 ttf-dejavu-core ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts doc-base dh-make curl defoma
gettext-doc gfortran-multilib gfortran-doc gfortran-4.5-multilib
gfortran-4.5-doc libgfortran3-dbg groff ncurses-doc ttf-japanese-gothic
ttf-japanese-mincho ttf-thryomanes ttf-baekmuk ttf-arphic-gbsn00lp
ttf-arphic-bsmi00lp ttf-arphic-gkai00mp ttf-arphic-bkai00mp less www-browser
libmail-box-perl r-doc-info r-doc-pdf r-mathlib r-base-html tclreadline
gvfs-bin
Recommended packages:
autotools-dev patchutils autopoint libglib2.0-data shared-mime-info
x-ttcidfont-conf xml-core libmail-sendmail-perl r-doc-html xterm
x-terminal-emulator libfile-mimeinfo-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper dpatch file fontconfig fontconfig-config gettext
gettext-base gfortran gfortran-4.5 groff-base html2text intltool-debian
libblas-dev libblas3gf libbz2-dev libcairo2 libcroco3 libdatrie1 libexpat1
libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libice6 libjpeg62
libjpeg62-dev liblapack-dev liblapack3gf libmagic1 libncurses5-dev
libpango1.0-0 libpaper-utils libpaper1 libpcre3 libpcre3-dev libpcrecpp0
libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libquadmath0
libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff4
libunistring0 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxss1 libxt6 man-db
po-debconf r-base-core r-base-dev r-cran-boot r-cran-class r-cran-cluster
r-cran-codetools r-cran-combinat r-cran-foreign r-cran-gdata r-cran-genetics
r-cran-gtools r-cran-haplo.stats r-cran-kernsmooth r-cran-lattice
r-cran-mass r-cran-matrix r-cran-mgcv r-cran-mvtnorm r-cran-nlme r-cran-nnet
r-cran-qvalue r-cran-rpart r-cran-spatial r-cran-survival r-recommended
sbuild-build-depends-r-cran-genabel-dummy tcl8.5 tk8.5 ttf-dejavu-core ucf
unzip x11-common xdg-utils zip zlib1g-dev
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/67.0 MB of archives.
After this operation, 152 MB of additional disk space will be used.
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Setting up ucf (3.0025+nmu1) ...
Setting up html2text (1.3.2a-15) ...
Setting up libglib2.0-0 (2.28.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
Setting up debhelper (8.1.2) ...
Setting up cdbs (0.4.92) ...
Setting up dpatch (2.0.31) ...
Setting up libexpat1 (2.0.1-7) ...
Setting up libfreetype6 (2.4.4-1) ...
Setting up ttf-dejavu-core (2.33-1) ...
Setting up fontconfig-config (2.8.0-2.1) ...
Setting up libfontconfig1 (2.8.0-2.1) ...
Setting up fontconfig (2.8.0-2.1) ...
Cleaning up old fontconfig caches... done.
Regenerating fonts cache... done.
Setting up libquadmath0 (4.6.0-2) ...
Setting up libgfortran3 (4.6.0-2) ...
Setting up gfortran-4.5 (4.5.2-8) ...
Setting up gfortran (4:4.5.2-4) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode.
Setting up libblas3gf (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3gf to provide /usr/lib/libblas.so.3gf (libblas.so.3gf) in auto mode.
Setting up libblas-dev (1.2-8) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode.
Setting up libbz2-dev (1.0.5-6) ...
Setting up libpixman-1-0 (0.21.4-2) ...
Setting up libpng12-0 (1.2.44-2) ...
Setting up libxau6 (1:1.0.6-1) ...
Setting up libxdmcp6 (1:1.1.0-1) ...
Setting up libxcb1 (1.7-2) ...
Setting up libx11-data (2:1.4.2-1) ...
Setting up libx11-6 (2:1.4.2-1) ...
Setting up libxcb-render0 (1.7-2) ...
Setting up libxcb-shm0 (1.7-2) ...
Setting up libxrender1 (1:0.9.6-1) ...
Setting up libcairo2 (1.10.2-6) ...
Setting up libdatrie1 (0.2.4-2) ...
Setting up x11-common (1:7.6+4) ...
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6 (2:1.0.7-1) ...
Setting up libjpeg62 (6b1-1) ...
Setting up libjpeg62-dev (6b1-1) ...
Setting up liblapack3gf (3.3.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3gf to provide /usr/lib/liblapack.so.3gf (liblapack.so.3gf) in auto mode.
Setting up liblapack-dev (3.3.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode.
Setting up libncurses5-dev (5.8+20110307-1) ...
Setting up libthai-data (0.1.15-1) ...
Setting up libthai0 (0.1.15-1) ...
Setting up libxft2 (2.2.0-2) ...
Setting up libpango1.0-0 (1.28.3-5) ...
Setting up libpaper1 (1.1.24) ...
Creating config file /etc/papersize with new version
Setting up libpaper-utils (1.1.24) ...
Setting up libpcrecpp0 (8.12-3) ...
Setting up libpcre3-dev (8.12-3) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.44-2) ...
Setting up libreadline6-dev (6.1-3) ...
Setting up libreadline-dev (6.1-3) ...
Setting up libsm6 (2:1.2.0-1) ...
Setting up libtiff4 (3.9.4-8) ...
Setting up libxext6 (2:1.2.0-2) ...
Setting up libxss1 (1:1.2.1-1) ...
Setting up libxt6 (1:1.1.1-1) ...
Setting up zip (3.0-3) ...
Setting up unzip (6.0-4) ...
Setting up xdg-utils (1.1.0~rc1-2) ...
Setting up tcl8.5 (8.5.9-2) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode.
Setting up tk8.5 (8.5.9-2) ...
update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode.
Setting up r-base-core (2.13.0~20110324-1) ...
Setting R_PAPERSIZE_USER default to 'a4'
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (2.13.0~20110324-1) ...
Setting up r-cran-boot (1.2.43-1) ...
Setting up r-cran-mass (7.3-11-1) ...
Setting up r-cran-class (7.3-3-1) ...
Setting up r-cran-cluster (1.13.3-1) ...
Setting up r-cran-codetools (0.2-8-1) ...
Setting up r-cran-combinat (0.0-8-1) ...
Setting up r-cran-foreign (0.8.42-1) ...
Setting up r-cran-gtools (2.6.2-1) ...
Setting up r-cran-gdata (2.8.1-1) ...
Setting up r-cran-kernsmooth (2.23-4-1) ...
Setting up r-cran-lattice (0.19-17-1) ...
Setting up r-cran-nlme (3.1.98-1) ...
Setting up r-cran-matrix (0.999375-48-1) ...
Setting up r-cran-mgcv (1.7-5-1) ...
Setting up r-cran-survival (2.36-5-1) ...
Setting up r-cran-rpart (3.1.48-1) ...
Setting up r-cran-nnet (7.3-1-1) ...
Setting up r-cran-spatial (7.3-2-1) ...
Setting up r-recommended (2.13.0~20110324-1) ...
Setting up r-cran-mvtnorm (0.9-96-1) ...
Setting up r-cran-genetics (1.3.6-1) ...
Setting up r-cran-haplo.stats (1.4.4-1) ...
Setting up r-cran-qvalue (1.24.0-1) ...
Setting up sbuild-build-depends-r-cran-genabel-dummy (0.invalid.0) ...
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? Build environment ?
????????????????????????????????????????????????????????????????????????????????
Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.21.0.20110327-2 dpkg-dev_1.15.8.10 g++-4.5_4.5.2-8 gcc-4.5_4.5.2-8 libc6-dev_2.11.2-13 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 linux-libc-dev_2.6.38-2
Package versions: apt_0.8.13 base-files_6.1 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110327-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.92 coreutils_8.5-1 cpp_4:4.5.2-4 cpp-4.5_4.5.2-8 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.2 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpatch_2.0.31 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15-1 file_5.04-5 findutils_4.4.2-1+b1 fontconfig_2.8.0-2.1 fontconfig-config_2.8.0-2.1 g++_4:4.5.2-4 g++-4.5_4.5.2-8 gcc_4:4.5.2-4 gcc-4.4-base_4.4.5-15 gcc-4.5_4.5.2-8 gcc-4.5-base_4.5.2-8 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gfortran_4:4.5.2-4 gfortran-4.5_4.5.2-8 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblas-dev_1.2-8 libblas3gf_1.2-8 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libbz2-dev_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc6_2.11.2-13 libc6-dev_2.11.2-13 libcairo2_1.10.2-6 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdatrie1_0.2.4-2 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdpkg-perl_1.15.8.10 libelfg0_0.8.13-1 libexpat1_2.0.1-7 libfontconfig1_2.8.0-2.1 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgdbm3_1.8.3-9 libgfortran3_4.6.0-2 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-2 libice6_2:1.0.7-1 libjpeg62_6b1-1 libjpeg62-dev_6b1-1 liblapack-dev_3.3.0-4 liblapack3gf_3.3.0-4 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.8+20110307-1 libncurses5-dev_5.8+20110307-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpango1.0-0_1.28.3-5 libpaper-utils_1.1.24 libpaper1_1.1.24 libpcre3_8.12-3 libpcre3-dev_8.12-3 libpcrecpp0_8.12-3 libpipeline1_1.2.0-1 libpixman-1-0_0.21.4-2 libpng12-0_1.2.44-2 libpng12-dev_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libquadmath0_4.6.0-2 libreadline-dev_6.1-3 libreadline6_6.1-3 libreadline6-dev_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libsm6_2:1.2.0-1 libss2_1.41.12-2 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-1 libthai0_0.1.15-1 libtiff4_3.9.4-8 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libx11-6_2:1.4.2-1 libx11-data_2:1.4.2-1 libxau6_1:1.0.6-1 libxcb-render0_1.7-2 libxcb-shm0_1.7-2 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxext6_2:1.2.0-2 libxft2_2.2.0-2 libxml2_2.7.8.dfsg-2 libxrender1_1:0.9.6-1 libxss1_1:1.2.1-1 libxt6_1:1.1.1-1 linux-libc-dev_2.6.38-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8 man-db_2.5.9-4 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.8+20110307-1 ncurses-bin_5.8+20110307-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-18 perl-base_5.10.1-18 perl-modules_5.10.1-18 po-debconf_1.0.16+nmu1 r-base-core_2.13.0~20110324-1 r-base-dev_2.13.0~20110324-1 r-cran-boot_1.2.43-1 r-cran-class_7.3-3-1 r-cran-cluster_1.13.3-1 r-cran-codetools_0.2-8-1 r-cran-combinat_0.0-8-1 r-cran-foreign_0.8.42-1 r-cran-gdata_2.8.1-1 r-cran-genetics_1.3.6-1 r-cran-gtools_2.6.2-1 r-cran-haplo.stats_1.4.4-1 r-cran-kernsmooth_2.23-4-1 r-cran-lattice_0.19-17-1 r-cran-mass_7.3-11-1 r-cran-matrix_0.999375-48-1 r-cran-mgcv_1.7-5-1 r-cran-mvtnorm_0.9-96-1 r-cran-nlme_3.1.98-1 r-cran-nnet_7.3-1-1 r-cran-qvalue_1.24.0-1 r-cran-rpart_3.1.48-1 r-cran-spatial_7.3-2-1 r-cran-survival_2.36-5-1 r-recommended_2.13.0~20110324-1 readline-common_6.1-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-genabel-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tcl8.5_8.5.9-2 tk8.5_8.5.9-2 ttf-dejavu-core_2.33-1 tzdata_2011d-1 ucf_3.0025+nmu1 unzip_6.0-4 util-linux_2.17.2-9.1 x11-common_1:7.6+4 xdg-utils_1.1.0~rc1-2 xz-utils_5.0.0-2 zip_3.0-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3
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? Build ?
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Unpack source
?????????????
dpkg-source: warning: extracting unsigned source package (r-cran-genabel_1.6-5-1.dsc)
dpkg-source: info: extracting r-cran-genabel in r-cran-genabel-1.6-5
dpkg-source: info: unpacking r-cran-genabel_1.6-5.orig.tar.gz
dpkg-source: info: unpacking r-cran-genabel_1.6-5-1.debian.tar.gz
Check disc space
????????????????
Sufficient free space for build
dpkg-buildpackage
?????????????????
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package r-cran-genabel
dpkg-buildpackage: source version 1.6-5-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build r-cran-genabel-1.6-5
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `BUILDDIR/r-cran-genabel-1.6-5'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `BUILDDIR/r-cran-genabel-1.6-5'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "reverse-patches" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
for dir in debian/patches ; do \
rm -f $dir/*.log ; \
done
dh_clean
if test -d src; then \
find src -regex ".*\..*o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
dpkg-source -b r-cran-genabel-1.6-5
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building r-cran-genabel using existing ./r-cran-genabel_1.6-5.orig.tar.gz
dpkg-source: info: building r-cran-genabel in r-cran-genabel_1.6-5-1.debian.tar.gz
dpkg-source: info: building r-cran-genabel in r-cran-genabel_1.6-5-1.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `BUILDDIR/r-cran-genabel-1.6-5'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `BUILDDIR/r-cran-genabel-1.6-5'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
make[1]: Entering directory `BUILDDIR/r-cran-genabel-1.6-5'
make[1]: Nothing to be done for `update-config'.
make[1]: Leaving directory `BUILDDIR/r-cran-genabel-1.6-5'
fakeroot debian/rules binary
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
if test -f /usr/bin/xvfb-run; then \
xvfb-run \
R CMD INSTALL -l BUILDDIR/r-cran-genabel-1.6-5/debian/r-cran-genabel/usr/lib/R/site-library --clean \
. ; \
else \
R CMD INSTALL -l BUILDDIR/r-cran-genabel-1.6-5/debian/r-cran-genabel/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'GenABEL' ...
** libs
make[1]: Entering directory `BUILDDIR/r-cran-genabel-1.6-5/src'
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c AbstractMatrix.cpp -o AbstractMatrix.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c AbstractMatrix_R.cpp -o AbstractMatrix_R.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c CastUtils.cpp -o CastUtils.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c Chip.cpp -o Chip.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c FileVector.cpp -o FileVector.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c FilteredMatrix.cpp -o FilteredMatrix.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c FilteredMatrix_R.cpp -o FilteredMatrix_R.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c Logger.cpp -o Logger.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c RealHandlerWrapper.cpp -o RealHandlerWrapper.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c ReusableFileHandle.cpp -o ReusableFileHandle.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c Transposer.cpp -o Transposer.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c bartlett_test.cpp -o bartlett_test.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c chinv2.cpp -o chinv2.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c cholesky2.cpp -o cholesky2.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c chsolve2.cpp -o chsolve2.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert.snp.affymetrix.cpp -o convert.snp.affymetrix.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert_snp_illumina.cpp -o convert_snp_illumina.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert_snp_merlin.cpp -o convert_snp_merlin.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert_snp_merlin_wslash.cpp -o convert_snp_merlin_wslash.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert_snp_tped.cpp -o convert_snp_tped.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c convert_util.cpp -o convert_util.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c coxfit2.cpp -o coxfit2.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c dautil.cpp -o dautil.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c dmatrix.cpp -o dmatrix.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c dometa.cpp -o dometa.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c fexact.c -o fexact.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c frutil.cpp -o frutil.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c gtps_container.cpp -o gtps_container.o
gcc -I/usr/share/R/include -fpic -std=gnu99 -O3 -pipe -g -c gwaa.c -o gwaa.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c gwaa_cpp.cpp -o gwaa_cpp.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c gwaa_data.cpp -o gwaa_data.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c gwaautil.cpp -o gwaautil.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c interactions_rare_recesive_alleles.cpp -o interactions_rare_recesive_alleles.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c iterator.cpp -o iterator.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c iterator_functions.cpp -o iterator_functions.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c lm_gwaa.cpp -o lm_gwaa.o
g++ -I/usr/share/R/include -DCOMPILE_WITH_R -fpic -O3 -pipe -g -c merge.snp.data.cpp -o merge.snp.data.o
g++ -shared -o GenABEL.so AbstractMatrix.o AbstractMatrix_R.o CastUtils.o Chip.o FileVector.o FilteredMatrix.o FilteredMatrix_R.o Logger.o RealHandlerWrapper.o ReusableFileHandle.o Transposer.o bartlett_test.o chinv2.o cholesky2.o chsolve2.o convert.snp.affymetrix.o convert_snp_illumina.o convert_snp_merlin.o convert_snp_merlin_wslash.o convert_snp_tped.o convert_util.o coxfit2.o dautil.o dmatrix.o dometa.o fexact.o frutil.o gtps_container.o gwaa.o gwaa_cpp.o gwaa_data.o gwaautil.o interactions_rare_recesive_alleles.o iterator.o iterator_functions.o lm_gwaa.o merge.snp.data.o -L/usr/lib64/R/lib -lR
make[1]: Leaving directory `BUILDDIR/r-cran-genabel-1.6-5/src'
make[1]: Entering directory `BUILDDIR/r-cran-genabel-1.6-5/src'
make[1]: Leaving directory `BUILDDIR/r-cran-genabel-1.6-5/src'
installing to BUILDDIR/r-cran-genabel-1.6-5/debian/r-cran-genabel/usr/lib/R/site-library/GenABEL/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
GenABEL v. 1.6-5 (February 07, 2011) loaded
* DONE (GenABEL)
rm -vf BUILDDIR/r-cran-genabel-1.6-5/debian/r-cran-genabel/usr/lib/R/site-library/R.css \
BUILDDIR/r-cran-genabel-1.6-5/debian/r-cran-genabel/usr/lib/R/site-library/GenABEL/COPYING \
BUILDDIR/r-cran-genabel-1.6-5/debian/r-cran-genabel/usr/lib/R/site-library/GenABEL/LICENSE.txt
if test -f debian/overrides; then \
install -d BUILDDIR/r-cran-genabel-1.6-5/debian/r-cran-genabel/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
BUILDDIR/r-cran-genabel-1.6-5/debian/r-cran-genabel/usr/share/lintian/overrides/r-cran-genabel; \
fi
Adding cdbs dependencies to debian/r-cran-genabel.substvars
dh_installdirs -pr-cran-genabel
## Require a number equal or superior than the R version the package was built with.
echo "R:Depends=r-base-core (>= 2.13.0~)" >> debian/r-cran-genabel.substvars
find debian/r-cran-genabel/usr/lib/R/site-library/GenABEL/ -type f -exec chmod 644 \{\} \;
dh_installdocs -pr-cran-genabel ./TODO
dh_installexamples -pr-cran-genabel
dh_installman -pr-cran-genabel
dh_installinfo -pr-cran-genabel
dh_installmenu -pr-cran-genabel
dh_installcron -pr-cran-genabel
dh_installinit -pr-cran-genabel
dh_installdebconf -pr-cran-genabel
dh_installemacsen -pr-cran-genabel
dh_installcatalogs -pr-cran-genabel
dh_installpam -pr-cran-genabel
dh_installlogrotate -pr-cran-genabel
dh_installlogcheck -pr-cran-genabel
dh_installchangelogs -pr-cran-genabel CHANGES.LOG
dh_installudev -pr-cran-genabel
dh_lintian -pr-cran-genabel
dh_bugfiles -pr-cran-genabel
dh_install -pr-cran-genabel
dh_link -pr-cran-genabel
dh_installmime -pr-cran-genabel
dh_strip -pr-cran-genabel
dh_compress -pr-cran-genabel
dh_fixperms -pr-cran-genabel
dh_makeshlibs -pr-cran-genabel
dh_installdeb -pr-cran-genabel
dh_perl -pr-cran-genabel
dh_shlibdeps -pr-cran-genabel
dh_gencontrol -pr-cran-genabel
dh_md5sums -pr-cran-genabel
dh_builddeb -pr-cran-genabel
dpkg-deb: building package `r-cran-genabel' in `../r-cran-genabel_1.6-5-1_amd64.deb'.
dpkg-genchanges >../r-cran-genabel_1.6-5-1_amd64.changes
dpkg-genchanges: including full source code in upload
dpkg-source --after-build r-cran-genabel-1.6-5
dpkg-buildpackage: full upload (original source is included)
????????????????????????????????????????????????????????????????????????????????
Build finished at 20110401-1350
Finished
????????
I: Built successfully
????????????????????????????????????????????????????????????????????????????????
? Changes ?
????????????????????????????????????????????????????????????????????????????????
r-cran-genabel_1.6-5-1_amd64.changes:
?????????????????????????????????????
Format: 1.8
Date: Fri, 01 Apr 2011 13:46:37 +0900
Source: r-cran-genabel
Binary: r-cran-genabel
Architecture: source amd64
Version: 1.6-5-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
r-cran-genabel - GNU R package for genome-wide SNP association analysis
Closes: 620269
Changes:
r-cran-genabel (1.6-5-1) unstable; urgency=low
.
* New upstream release, buildable with R > 2.12 (closes: #620269).
.
[ Andreas Tille ]
* debian/control:
- added myself to uploaders
- changed section to gnu-r
- Depend on ${R:Depends}
* debian/rules:
- fix permissions of files that should not be executable
- Require a number equal or superior than the R version the package
was built with, using a R:Depends substvar
.
[ Charles Plessy ]
* debian/control:
- Added myself to uploaders.
- Use debhelper 8 (debian/compat).
- Build-depend on R > 2.10 according to DESCRIPTION.
- Replaces r-other-genabel.
- Added Vcs-Browser and Vcs-Svn fields.
- Updated homepage.
* Install CHANGES.LOG as upstream changelog (debian/rules).
* Converted debian/copyright to DEP-5 format.
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Checksums-Sha256:
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Files:
e00925e959090b2c2954483b8f6750d0 1252 gnu-r optional r-cran-genabel_1.6-5-1.dsc
ed90c86aa48f36451e889acbf5a493c6 6666374 gnu-r optional r-cran-genabel_1.6-5.orig.tar.gz
fa96d9813b7f68b3fc2901cca6d7f38e 3042 gnu-r optional r-cran-genabel_1.6-5-1.debian.tar.gz
39a70bcd4257db3fa9a4a96931d51618 7094076 gnu-r optional r-cran-genabel_1.6-5-1_amd64.deb
????????????????????????????????????????????????????????????????????????????????
? Package contents ?
????????????????????????????????????????????????????????????????????????????????
r-cran-genabel_1.6-5-1_amd64.deb
????????????????????????????????
new debian package, version 2.0.
size 7094076 bytes: control archive= 2580 bytes.
1256 bytes, 25 lines control
4603 bytes, 56 lines md5sums
Package: r-cran-genabel
Version: 1.6-5-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 12932
Depends: libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0), r-base-core (>= 2.13.0~), r-recommended, r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue
Conflicts: r-other-genabel
Replaces: r-other-genabel
Provides: r-other-genabel
Section: gnu-r
Priority: optional
Homepage: http://www.genabel.org/
Description: GNU R package for genome-wide SNP association analysis
The package offers the R library GenABEL for the hunt of genetic contributions
to a disease (or any other pheonypical trait) by so called genome-wide
association analysis. Additional input commonly comes from DNA mircoarray
experiments, performed on every individual, that determine differences
(polymorphisms) in the population. GenABEL finds associations between
quantitative or binary traits and single-nucleiotide polymorphisms
(SNPs).
.
When publishing work based to which this package has contributed please
cite: Yurii S. Aulchenko, Stephan Ripke, Aaron Isaacs, Cornelia M. van Duijn
(2007) "GenABEL: an R library for genome-wide association analysis"
Bioinformatics 2007 23(10):1294-1296.
drwxr-xr-x root/root 0 2011-04-01 13:50 ./
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/
drwxr-xr-x root/root 0 2011-04-01 13:49 ./usr/lib/
drwxr-xr-x root/root 0 2011-04-01 13:49 ./usr/lib/R/
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/R/
-rw-r--r-- root/root 3645 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/R/GenABEL.rdx
-rw-r--r-- root/root 384 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/R/GenABEL
-rw-r--r-- root/root 199472 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/R/GenABEL.rdb
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/help/
-rw-r--r-- root/root 2346 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/help/GenABEL.rdx
-rw-r--r-- root/root 6562 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/help/AnIndex
-rw-r--r-- root/root 1542 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/help/aliases.rds
-rw-r--r-- root/root 936 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/help/paths.rds
-rw-r--r-- root/root 268063 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/help/GenABEL.rdb
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/exdata/
-rw-r--r-- root/root 1182 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/exdata/phenos.18
-rw-r--r-- root/root 1591142 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/exdata/srgenos.raw
-rw-r--r-- root/root 4497 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/exdata/map.18
-rw-r--r-- root/root 98100 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/exdata/pedin.18
-rw-r--r-- root/root 4193430 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/exdata/srgenos.dat
-rw-r--r-- root/root 20399 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/exdata/chr18.raw
-rw-r--r-- root/root 74041 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/exdata/srphenos.dat
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/data/
-rw-r--r-- root/root 169292 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/data/ge03d2ex.clean.RData
-rw-r--r-- root/root 1331355 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/data/ge03d2.RData
-rw-r--r-- root/root 205622 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/data/ge03d2ex.RData
-rw-r--r-- root/root 1054177 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/data/ge03d2.clean.RData
-rw-r--r-- root/root 447159 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/data/srdta.RData
-rw-r--r-- root/root 433649 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/data/ge03d2c.RData
-rw-r--r-- root/root 2748 2011-04-01 13:49 ./usr/lib/R/site-library/GenABEL/NAMESPACE
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/html/
-rw-r--r-- root/root 25382 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/html/00Index.html
-rw-r--r-- root/root 1179 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/html/R.css
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/Meta/
-rw-r--r-- root/root 303 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/Meta/demo.rds
-rw-r--r-- root/root 4265 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/Meta/Rd.rds
-rw-r--r-- root/root 3814 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/Meta/hsearch.rds
-rw-r--r-- root/root 1042 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/Meta/nsInfo.rds
-rw-r--r-- root/root 180 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/Meta/data.rds
-rw-r--r-- root/root 2078 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/Meta/links.rds
-rw-r--r-- root/root 831 2011-04-01 13:49 ./usr/lib/R/site-library/GenABEL/Meta/package.rds
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/demo/
-rw-r--r-- root/root 9556 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/demo/ge03d2.R
-rw-r--r-- root/root 8026 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/demo/ge03d2ex.R
-rw-r--r-- root/root 12834 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/demo/srdtawin.R
-rw-r--r-- root/root 14005 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/demo/srdta.R
-rw-r--r-- root/root 665 2011-04-01 13:49 ./usr/lib/R/site-library/GenABEL/DESCRIPTION
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/libs/
-rw-r--r-- root/root 601664 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/libs/GenABEL.so
-rw-r--r-- root/root 8030 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/INDEX
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/doc/
-rw-r--r-- root/root 180 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/doc/index.html
-rw-r--r-- root/root 720975 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/doc/GenABEL-manual.pdf
-rw-r--r-- root/root 1470346 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/doc/ABEL-tutorial.pdf
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/unitTests/
-rw-r--r-- root/root 3453 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/unitTests/report.html
-rw-r--r-- root/root 244 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/unitTests/Makefile
-rw-r--r-- root/root 1409 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/unitTests/runit.iterator.R
-rw-r--r-- root/root 1285 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/unitTests/report.txt
-rw-r--r-- root/root 252 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/unitTests/reportSummary.txt
-rw-r--r-- root/root 1156 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/unitTests/runit.impute2xxx_large.R
-rw-r--r-- root/root 3189 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/unitTests/runit.impute2xxx.R
-rw-r--r-- root/root 1194 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/unitTests/shared_functions.R
-rw-r--r-- root/root 1867 2011-04-01 13:50 ./usr/lib/R/site-library/GenABEL/unitTests/runit.mach2databel.R
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/share/
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/share/doc/
drwxr-xr-x root/root 0 2011-04-01 13:50 ./usr/share/doc/r-cran-genabel/
-rw-r--r-- root/root 51 2011-04-01 13:07 ./usr/share/doc/r-cran-genabel/TODO.Debian
-rw-r--r-- root/root 8507 2011-02-07 17:55 ./usr/share/doc/r-cran-genabel/changelog.gz
-rw-r--r-- root/root 617 2010-08-19 03:03 ./usr/share/doc/r-cran-genabel/TODO
-rw-r--r-- root/root 1186 2011-04-01 13:32 ./usr/share/doc/r-cran-genabel/copyright
-rw-r--r-- root/root 758 2011-04-01 13:47 ./usr/share/doc/r-cran-genabel/changelog.Debian.gz
-rw-r--r-- root/root 441 2011-04-01 12:49 ./usr/share/doc/r-cran-genabel/README.Debian
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? Post Build ?
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????????????????????????????????????????????????????????????????????????????????
? Cleanup ?
????????????????????????????????????????????????????????????????????????????????
Purging CHROOTBUILDDIR
Reading package lists...
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0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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Reading state information...
The following packages will be REMOVED:
bsdmainutils* cdbs* debhelper* dpatch* file* fontconfig* fontconfig-config*
gettext* gettext-base* gfortran* gfortran-4.5* groff-base* html2text*
intltool-debian* libblas-dev* libblas3gf* libbz2-dev* libcairo2* libcroco3*
libdatrie1* libexpat1* libfontconfig1* libfreetype6* libgfortran3*
libglib2.0-0* libice6* libjpeg62* libjpeg62-dev* liblapack-dev*
liblapack3gf* libmagic1* libncurses5-dev* libpango1.0-0* libpaper-utils*
libpaper1* libpcre3* libpcre3-dev* libpcrecpp0* libpipeline1* libpixman-1-0*
libpng12-0* libpng12-dev* libquadmath0* libreadline-dev* libreadline6-dev*
libsm6* libthai-data* libthai0* libtiff4* libunistring0* libx11-6*
libx11-data* libxau6* libxcb-render0* libxcb-shm0* libxcb1* libxdmcp6*
libxext6* libxft2* libxml2* libxrender1* libxss1* libxt6* man-db*
po-debconf* r-base-core* r-base-dev* r-cran-boot* r-cran-class*
r-cran-cluster* r-cran-codetools* r-cran-combinat* r-cran-foreign*
r-cran-gdata* r-cran-genetics* r-cran-gtools* r-cran-haplo.stats*
r-cran-kernsmooth* r-cran-lattice* r-cran-mass* r-cran-matrix* r-cran-mgcv*
r-cran-mvtnorm* r-cran-nlme* r-cran-nnet* r-cran-qvalue* r-cran-rpart*
r-cran-spatial* r-cran-survival* r-recommended*
sbuild-build-depends-core-dummy* sbuild-build-depends-r-cran-genabel-dummy*
tcl8.5* tk8.5* ttf-dejavu-core* ucf* unzip* x11-common* xdg-utils* zip*
zlib1g-dev*
0 upgraded, 0 newly installed, 101 to remove and 0 not upgraded.
After this operation, 152 MB disk space will be freed.
(Reading database ... 15296 files and directories currently installed.)
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All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of stop.
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? Summary ?
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Architecture: amd64
Build-Space: 39840
Build-Time: 41
Distribution: unstable
Install-Time: 102
Job: r-cran-genabel_1.6-5-1.dsc
Package: r-cran-genabel
Package-Time: 147
Source-Version: 1.6-5-1
Space: 39840
Status: successful
Version: 1.6-5-1
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Finished at 20110401-1350
Build needed 00:02:27, 39840k disc space
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