[Debian-med-packaging] Bug#636634: Packaging error breaks mafft

Benjamin Redelings I bredelings at hybrid.statgen.ncsu.edu
Thu Aug 4 18:57:58 UTC 2011


Package: mafft
Version: 6.850-1
Severity: normal

Running mafft produces the following error:

correctly installed?
mafft binaries have to be installed in $MAFFT_BINARIES
or the /tmp/buildd/mafft-6.850/debian/mafft/usr/lib/mafft/lib/mafft directory.

Clearly the /tmp/buildd/... should not be part of this path, which should
just be /usr/lib/mafft/lib/mafft

-- System Information:
Debian Release: wheezy/sid
  APT prefers unstable
  APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)

Kernel: Linux 2.6.39-2-amd64 (SMP w/8 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages mafft depends on:
ii  libc6                         2.13-13    Embedded GNU C Library: Shared lib

Versions of packages mafft recommends:
ii  blast2               1:2.2.24.20100808-3 Basic Local Alignment Search Tool
ii  lynx                 2.8.8dev.9-2        Text-mode WWW Browser (transitiona
ii  ruby                 4.8                 Transitional package for ruby1.8
ii  ruby1.8 [ruby]       1.8.7.352-2         Interpreter of object-oriented scr

mafft suggests no packages.

-- no debconf information





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