[Debian-med-packaging] Bug#632150: tabix: package not building as needed.

[Andreas Tille]

Hi Charles,

the bug log says:

  From: Charles Plessy <plessy at debian.org>
  Date: Fri, 1 Jul 2011 08:03:34 +0900
  I would like to give time Upstream for them to apply your patch.  If in their
  next release it is not applied, I will do it through the Debian packaging.

Any news about this?

Kind regards

        Andreas.

On Wed, Jun 29, 2011 at 11:56:46PM +0200, David wrote:
> Package: tabix
> Version: 0.2.5-1
> Severity: normal
> Tags: patch
> User: ubuntu-devel at lists.ubuntu.com
> Usertags: origin-ubuntu oneiric ubuntu-patch
> 
> 
> 
> *** /tmp/tmp9kUZNp
> In Ubuntu, the attached patch was applied to achieve the following:
> 
> 
>   * Reordered libs in Makefile to build with ld --as-needed (LP: #803202)
> 
> 
> Thanks for considering the patch.
> 
> 
> 
> -- System Information:
> Debian Release: squeeze/sid
>   APT prefers natty-updates
>   APT policy: (500, 'natty-updates'), (500, 'natty-security'), (500, 'natty'), (500, 'maverick-backports')
> Architecture: i386 (i686)
> 
> Kernel: Linux 2.6.38-8-generic-pae (SMP w/4 CPU cores)
> Locale: LANG=en_ZA.UTF-8, LC_CTYPE=en_ZA.UTF-8 (charmap=UTF-8)
> Shell: /bin/sh linked to /bin/dash

> === added directory '.pc'
> === added file '.pc/applied-patches'
> --- .pc/applied-patches	1970-01-01 00:00:00 +0000
> +++ .pc/applied-patches	2011-06-29 21:35:06 +0000
> @@ -0,0 +1,2 @@
> +ld-as-needed.patch
> +ld-as-needed.patch
> 
> === modified file 'Makefile'
> --- Makefile	2011-04-12 17:15:33 +0000
> +++ Makefile	2011-06-29 21:35:35 +0000
> @@ -38,7 +38,7 @@
>  		$(AR) -cru $@ $(LOBJS)
>  
>  tabix:lib $(AOBJS)
> -		$(CC) $(CFLAGS) -o $@ $(AOBJS) -lm $(LIBPATH) -lz -L. -ltabix
> +		$(CC) $(CFLAGS) -o $@ $(AOBJS) -L. -ltabix -lm $(LIBPATH) -lz  
>  
>  bgzip:bgzip.o bgzf.o knetfile.o
>  		$(CC) $(CFLAGS) -o $@ bgzip.o bgzf.o knetfile.o -lz
> 
> === modified file 'debian/changelog'
> 
> === added directory 'debian/patches'
> === added file 'debian/patches/ld-as-needed.patch'
> --- debian/patches/ld-as-needed.patch	1970-01-01 00:00:00 +0000
> +++ debian/patches/ld-as-needed.patch	2011-06-29 21:49:30 +0000
> @@ -0,0 +1,11 @@
> +--- a/Makefile
> ++++ b/Makefile
> +@@ -38,7 +38,7 @@
> + 		$(AR) -cru $@ $(LOBJS)
> + 
> + tabix:lib $(AOBJS)
> +-		$(CC) $(CFLAGS) -o $@ $(AOBJS) -lm $(LIBPATH) -lz -L. -ltabix
> ++		$(CC) $(CFLAGS) -o $@ $(AOBJS) -L. -ltabix -lm $(LIBPATH) -lz  
> + 
> + bgzip:bgzip.o bgzf.o knetfile.o
> + 		$(CC) $(CFLAGS) -o $@ bgzip.o bgzf.o knetfile.o -lz
> 
> === added file 'debian/patches/series'
> --- debian/patches/series	1970-01-01 00:00:00 +0000
> +++ debian/patches/series	2011-06-29 21:35:06 +0000
> @@ -0,0 +1 @@
> +ld-as-needed.patch
> 

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