[Debian-med-packaging] last-align_178-1_amd64.changes ACCEPTED into unstable
Charles Plessy
plessy at debian.org
Thu Jun 30 05:45:40 UTC 2011
Le Thu, Jun 30, 2011 at 05:17:09AM +0000, Debian FTP Masters a écrit :
>
>
>
> Accepted:
> last-align_178-1.debian.tar.gz
> to main/l/last-align/last-align_178-1.debian.tar.gz
> last-align_178-1.dsc
> to main/l/last-align/last-align_178-1.dsc
> last-align_178-1_amd64.deb
> to main/l/last-align/last-align_178-1_amd64.deb
> last-align_178.orig.tar.gz
> to main/l/last-align/last-align_178.orig.tar.gz
Build logs attached.
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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sbuild (Debian sbuild) 0.62.4 (25 Jun 2011) on anx191
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? last-align 178-1 (amd64) 30 Jun 2011 13:54 ?
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Package: last-align
Version: 178-1
Source Version: 178-1
Distribution: unstable
Architecture: amd64
I: NOTICE: Log filtering will replace 'build/last-align-HBMW8u/last-align-178' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/last-align-HBMW8u' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-cfd13e72-efad-473f-92af-eb7d9557d1f1' with '«CHROOT»'
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? Update chroot ?
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Hit http://ftp.jp.debian.org sid InRelease
Hit http://ftp.jp.debian.org sid/main amd64 Packages/DiffIndex
Hit http://ftp.jp.debian.org sid/main TranslationIndex
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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? Fetch source files ?
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Local sources
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last-align_178-1.dsc exists in .; copying to chroot
Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-U1cV7k/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
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? Install core build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
sbuild-build-depends-core-dummy is already the newest version.
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java liblcms1 libunistring0 libxerces2-java debhelper libwrap0
libavalon-framework-java libatk1.0-data ttf-dejavu-core libx11-data
libxalan2-java libdbus-1-3 unzip libpipeline1 libcap2 java-common po-debconf
libpcre3 libnspr4-0d groff-base gettext-base java-wrappers
default-jre-headless libcairo2 libgnutls26 libcommons-logging-java
intltool-debian libtasn1-3 openjdk-6-jre-lib libfreetype6 libthai-data
shared-mime-info libglib2.0-0 libexpat1 libcommons-math-java libdatrie1
openjdk-6-jre-headless fontconfig libavahi-common-data libsam-java
libgdk-pixbuf2.0-0 gettext libxcb1 ant libaccess-bridge-java-jni default-jdk
libxau6 libpixman-1-0 libcups2 default-jre libxinerama1 libkrb5support0
libgif4 libcommons-net-java libxft2 fontconfig-config libbsf-java libcroco3
libxml-commons-external-java tzdata-java libice6 libxdmcp6 libgcrypt11
libthai0 libxml2 libkeyutils1 file libasound2 libflac8 libxrender1
libconcurrent-java libvorbisenc2 libjama-java ucf libasyncns0 libtiff4
libjasper1 libswing-layout-java libjpeg62 libxtst6 libavahi-client3
x11-common libx11-6 man-db libfontconfig1 ca-certificates-java html2text
openssl libhamcrest-java libpango1.0-0 libsm6 libpulse0 libxdamage1
libxcb-render0 libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk
libbatik-java libxcursor1 libxcb-shm0 libjlibeps-java libxext6 openjdk-6-jre
libavahi-common3 liblog4j1.2-java libcommons-io-java libxrandr2 libnss3-1d
ca-certificates libsndfile1 libsqlite3-0 libgtk2.0-0 libmagic1 libssl1.0.0
libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, help2man (>= 1.36.4+nmu1), python-imaging
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 8), cdbs, help2man (>= 1.36.4+nmu1), python-imaging
dpkg-deb: building package `sbuild-build-depends-last-align-dummy' in `/«BUILDDIR»/resolver-RsXpOT/apt_archive/sbuild-build-depends-last-align-dummy.deb'.
OK
Reading package lists...
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? Install last-align build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java libxerces2-java libwrap0 libavalon-framework-java libatk1.0-data
ttf-dejavu-core libx11-data libxalan2-java libdbus-1-3 unzip libcap2
java-common libnspr4-0d java-wrappers default-jre-headless libcairo2
libgnutls26 libcommons-logging-java libtasn1-3 openjdk-6-jre-lib
libfreetype6 libthai-data libcommons-math-java libdatrie1
openjdk-6-jre-headless fontconfig libavahi-common-data libsam-java
libgdk-pixbuf2.0-0 libxcb1 ant libaccess-bridge-java-jni default-jdk libxau6
libpixman-1-0 libcups2 default-jre libxinerama1 libkrb5support0 libgif4
libcommons-net-java libxft2 fontconfig-config libbsf-java
libxml-commons-external-java tzdata-java libice6 libxdmcp6 libgcrypt11
libthai0 libkeyutils1 libasound2 libflac8 libxrender1 libconcurrent-java
libvorbisenc2 libjama-java ucf libasyncns0 libtiff4 libjasper1
libswing-layout-java libxtst6 libavahi-client3 x11-common libx11-6
libfontconfig1 ca-certificates-java openssl libhamcrest-java libpango1.0-0
libsm6 libpulse0 libxdamage1 libxcb-render0 libgssapi-krb5-2 libxi6
libvorbis0a openjdk-6-jdk libbatik-java libxcursor1 libxcb-shm0
libjlibeps-java libxext6 openjdk-6-jre libavahi-common3 liblog4j1.2-java
libcommons-io-java libxrandr2 libnss3-1d ca-certificates libsndfile1
libgtk2.0-0 libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
cdbs help2man libncursesw5 mime-support python python-imaging python-minimal
python2.6 python2.6-minimal
Suggested packages:
devscripts python-doc python-tk python-profiler python-imaging-doc
python-imaging-dbg python2.6-doc binfmt-support
Recommended packages:
autotools-dev libgpm2
The following NEW packages will be installed:
cdbs help2man libncursesw5 mime-support python python-imaging python-minimal
python2.6 python2.6-minimal sbuild-build-depends-last-align-dummy
0 upgraded, 10 newly installed, 0 to remove and 0 not upgraded.
Need to get 4539 kB/5266 kB of archives.
After this operation, 19.3 MB of additional disk space will be used.
Get:1 http://ftp.jp.debian.org/debian/ sid/main python2.6-minimal amd64 2.6.7-2 [1524 kB]
Get:2 http://ftp.jp.debian.org/debian/ sid/main python2.6 amd64 2.6.7-2 [2481 kB]
Get:3 http://ftp.jp.debian.org/debian/ sid/main help2man amd64 1.40.4 [89.5 kB]
Get:4 http://ftp.jp.debian.org/debian/ sid/main python-imaging amd64 1.1.7-3 [444 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 4539 kB in 0s (7725 kB/s)
Selecting previously deselected package libncursesw5.
(Reading database ... 16393 files and directories currently installed.)
Unpacking libncursesw5 (from .../libncursesw5_5.9-1_amd64.deb) ...
Selecting previously deselected package mime-support.
Unpacking mime-support (from .../mime-support_3.51-1_all.deb) ...
Selecting previously deselected package python2.6-minimal.
Unpacking python2.6-minimal (from .../python2.6-minimal_2.6.7-2_amd64.deb) ...
Selecting previously deselected package python2.6.
Unpacking python2.6 (from .../python2.6_2.6.7-2_amd64.deb) ...
Selecting previously deselected package python-minimal.
Unpacking python-minimal (from .../python-minimal_2.6.6-14_all.deb) ...
Selecting previously deselected package python.
Unpacking python (from .../python_2.6.6-14_all.deb) ...
Selecting previously deselected package cdbs.
Unpacking cdbs (from .../archives/cdbs_0.4.94_all.deb) ...
Selecting previously deselected package help2man.
Unpacking help2man (from .../help2man_1.40.4_amd64.deb) ...
Selecting previously deselected package python-imaging.
Unpacking python-imaging (from .../python-imaging_1.1.7-3_amd64.deb) ...
Selecting previously deselected package sbuild-build-depends-last-align-dummy.
Unpacking sbuild-build-depends-last-align-dummy (from .../sbuild-build-depends-last-align-dummy.deb) ...
Processing triggers for man-db ...
Setting up libncursesw5 (5.9-1) ...
Setting up mime-support (3.51-1) ...
update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode.
Setting up python2.6-minimal (2.6.7-2) ...
Setting up python2.6 (2.6.7-2) ...
Setting up python-minimal (2.6.6-14) ...
Setting up python (2.6.6-14) ...
Setting up cdbs (0.4.94) ...
Setting up help2man (1.40.4) ...
Setting up python-imaging (1.1.7-3) ...
Setting up sbuild-build-depends-last-align-dummy (0.invalid.0) ...
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? Build environment ?
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Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.21.52.20110606-2 dpkg-dev_1.16.0.3 g++-4.6_4.6.1-1 gcc-4.6_4.6.1-1 libc6-dev_2.13-7 libstdc++6_4.6.1-1 libstdc++6-4.6-dev_4.6.1-1 linux-libc-dev_2.6.39-2
Package versions: ant_1.8.2-2 apt_0.8.15 base-files_6.4 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.52.20110606-2 bsdmainutils_8.2.3 bsdutils_1:2.19.1-2 build-essential_11.5 bzip2_1.0.5-6 ca-certificates_20110502 ca-certificates-java_20110531 cdbs_0.4.94 coreutils_8.5-1 cpp_4:4.6.0-6 cpp-4.6_4.6.1-1 dash_0.5.5.1-7.4 debconf_1.5.40 debconf-i18n_1.5.40 debfoster_2.7-1.1 debhelper_8.9.0 debian-archive-keyring_2010.08.28 debianutils_4.0.2 default-jdk_1:1.6-40 default-jre_1:1.6-40 default-jre-headless_1:1.6-40 diffutils_1:3.0-1 dpkg_1.16.0.3 dpkg-dev_1.16.0.3 e2fslibs_1.41.12-4stable1 e2fsprogs_1.41.12-4stable1 fakeroot_1.16-1 file_5.04-5+b1 findutils_4.4.2-1+b1 fontconfig_2.8.0-3 fontconfig-config_2.8.0-3 g++_4:4.6.0-6 g++-4.6_4.6.1-1 gcc_4:4.6.0-6 gcc-4.6_4.6.1-1 gcc-4.6-base_4.6.1-1 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.8-2 groff-base_1.21-6 gzip_1.3.12-9 help2man_1.40.4 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.10 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 java-common_0.40 java-wrappers_0.1.22 junit4_4.8.2-2 libaccess-bridge-java_1.26.2-5 libaccess-bridge-java-jni_1.26.2-5 libacl1_2.2.51-1 libasound2_1.0.23-4 libasyncns0_0.8-2 libatk1.0-0_2.0.1-1 libatk1.0-data_2.0.1-1 libattr1_1:2.4.46-1 libavahi-client3_0.6.30-3 libavahi-common-data_0.6.30-3 libavahi-common3_0.6.30-3 libavalon-framework-java_4.2.0-7 libbatik-java_1.7-7 libblkid1_2.19.1-2 libbsf-java_1:2.4.0-4 libbz2-1.0_1.0.5-6 libc-bin_2.13-7 libc-dev-bin_2.13-7 libc6_2.13-7 libc6-dev_2.13-7 libcairo2_1.10.2-6 libcap2_1:2.21-1 libclass-isa-perl_0.36-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-4stable1 libcommons-io-java_1.4-3 libcommons-logging-java_1.1.1-8 libcommons-math-java_2.2-1 libcommons-net-java_1.4.1-2 libconcurrent-java_1.3.4-4 libcroco3_0.6.2-1 libcups2_1.4.6-11 libdatrie1_0.2.4-3 libdb4.7_4.7.25-20 libdb4.8_4.8.30-9 libdb5.1_5.1.25-11 libdbus-1-3_1.4.12-2 libdpkg-perl_1.16.0.3 libelfg0_0.8.13-3 libexpat1_2.0.1-7 libflac8_1.2.1-3 libfontconfig1_2.8.0-3 libfreetype6_2.4.4-2 libgc1c2_1:7.1-8 libgcc1_1:4.6.1-1 libgcrypt11_1.4.6-7 libgdbm3_1.8.3-9 libgdk-pixbuf2.0-0_2.23.3-3.1 libgif4_4.1.6-9 libglib2.0-0_2.28.6-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgnutls26_2.10.5-2 libgomp1_4.6.1-1 libgpg-error0_1.10-0.3 libgssapi-krb5-2_1.9.1+dfsg-1+b1 libgtk2.0-0_2.24.4-3 libgtk2.0-common_2.24.4-3 libhamcrest-java_1.1-8 libice6_2:1.0.7-2 libjama-java_1.0.2-3 libjargs-java_1.0.0-3 libjasper1_1.900.1-7+b1 libjaxp1.3-java_1.3.05-1 libjlibeps-java_0.1+2-1 libjpeg62_6b1-1 libk5crypto3_1.9.1+dfsg-1+b1 libkeyutils1_1.4-5 libkrb5-3_1.9.1+dfsg-1+b1 libkrb5support0_1.9.1+dfsg-1+b1 liblcms1_1.18.dfsg-1.2+b4 liblocale-gettext-perl_1.05-6+b1 liblog4j1.2-java_1.2.15-11 liblzma2_5.0.0-2 libmagic1_5.04-5+b1 libmount1_2.19.1-2 libmpc2_0.9-3 libmpfr4_3.0.1-4 libncurses5_5.9-1 libncursesw5_5.9-1 libnspr4-0d_4.8.8-2 libnss3-1d_3.12.10-1 libogg0_1.2.2~dfsg-1 liboro-java_2.0.8a-7 libpam-modules_1.1.3-2 libpam-modules-bin_1.1.3-2 libpam-runtime_1.1.3-2 libpam0g_1.1.3-2 libpango1.0-0_1.28.4-1 libpcre3_8.12-3 libpipeline1_1.2.0-3 libpixman-1-0_0.21.8-1 libpng12-0_1.2.44-2 libpod-plainer-perl_1.03-1 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpulse0_0.9.21-4 libpwl5_0.11.2-3 libquadmath0_4.6.1-1 libreadline6_6.2-2 libsam-java_1.46-1 libselinux1_2.0.98-1.1 libsepol1_2.0.42-1 libslang2_2.2.4-2 libsm6_2:1.2.0-2 libsndfile1_1.0.24-1 libsqlite3-0_3.7.7-2 libss2_1.41.12-4stable1 libssl1.0.0_1.0.0d-3 libstdc++6_4.6.1-1 libstdc++6-4.6-dev_4.6.1-1 libswing-layout-java_1.0.4-1 libswitch-perl_2.16-1 libtasn1-3_2.9-4 libtext-charwidth-perl_0.04-6+b1 libtext-iconv-perl_1.7-2+b1 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.15-2 libthai0_0.1.15-2 libtiff4_3.9.5-1 libtimedate-perl_1.2000-1 libunistring0_0.9.3-4 libusb-0.1-4_2:0.1.12-17 libuuid1_2.19.1-2 libvorbis0a_1.3.2-1 libvorbisenc2_1.3.2-1 libwrap0_7.6.q-21 libx11-6_2:1.4.3-2 libx11-data_2:1.4.3-2 libxalan2-java_2.7.1-5 libxau6_1:1.0.6-3 libxcb-render0_1.7-3 libxcb-shm0_1.7-3 libxcb1_1.7-3 libxcomposite1_1:0.4.3-2 libxcursor1_1:1.1.11-3 libxdamage1_1:1.1.3-2 libxdmcp6_1:1.1.0-3 libxerces2-java_2.9.1-4.1 libxext6_2:1.3.0-3 libxfixes3_1:5.0-4 libxft2_2.2.0-3 libxi6_2:1.4.3-3 libxinerama1_2:1.1.1-3 libxml-commons-external-java_1.3.05-2 libxml2_2.7.8.dfsg-3 libxrandr2_2:1.3.1-2 libxrender1_1:0.9.6-2 libxtst6_2:1.2.0-1 linux-libc-dev_2.6.39-2 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.2-1 mawk_1.3.3-15 mime-support_3.51-1 mount_2.19.1-2 multiarch-support_2.13-7 ncurses-base_5.9-1 ncurses-bin_5.9-1 openjdk-6-jdk_6b18-1.8.7-5 openjdk-6-jre_6b18-1.8.7-5 openjdk-6-jre-headless_6b18-1.8.7-5 openjdk-6-jre-lib_6b18-1.8.7-5 openssl_1.0.0d-3 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-2 perl_5.12.3-7+b1 perl-base_5.12.3-7+b1 perl-modules_5.12.3-7 po-debconf_1.0.16+nmu1 python_2.6.6-14 python-imaging_1.1.7-3 python-minimal_2.6.6-14 python2.6_2.6.7-2 python2.6-minimal_2.6.7-2 readline-common_6.2-2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-last-align-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 shared-mime-info_0.90-1 sysv-rc_2.88dsf-13.10 sysvinit_2.88dsf-13.10 sysvinit-utils_2.88dsf-13.10 tar_1.25-3 ttf-dejavu-core_2.33-1 tzdata_2011h-2 tzdata-java_2011h-2 ucf_3.0025+nmu2 unzip_6.0-4 util-linux_2.19.1-2 x11-common_1:7.6+7 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3
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? Build ?
????????????????????????????????????????????????????????????????????????????????
Unpack source
?????????????
dpkg-source: warning: extracting unsigned source package (last-align_178-1.dsc)
dpkg-source: info: extracting last-align in last-align-178
dpkg-source: info: unpacking last-align_178.orig.tar.gz
dpkg-source: info: unpacking last-align_178-1.debian.tar.gz
Check disc space
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Sufficient free space for build
User Environment
????????????????
HOME=/sbuild-nonexistent
LOGNAME=charles
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
SCHROOT_SESSION_ID=sid-amd64-sbuild-cfd13e72-efad-473f-92af-eb7d9557d1f1
SCHROOT_UID=31051
SCHROOT_USER=charles
SHELL=/bin/sh
TERM=xterm
USER=charles
USERNAME=charles
dpkg-buildpackage
?????????????????
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package last-align
dpkg-buildpackage: source version 178-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build last-align-178
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
test -x debian/rules
dh_testroot
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" -k clean
make[1]: *** No rule to make target `clean'.make[1]: Entering directory `/«PKGBUILDDIR»'
make[1]: Leaving directory `/«PKGBUILDDIR»'
make: [makefile-clean] Error 2 (ignored)
dh_clean
rm -f src/lastdb src/lastal src/lastex src/*.o
dpkg-source -b last-align-178
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building last-align using existing ./last-align_178.orig.tar.gz
dpkg-source: info: building last-align in last-align_178-1.debian.tar.gz
dpkg-source: info: building last-align in last-align_178-1.dsc
debian/rules build
test -x debian/rules
mkdir -p "."
/usr/bin/make -C . CFLAGS="-g -O2 -g -O2 -Wall" CXXFLAGS="-g -O2 -g -O2 -Wall" CPPFLAGS="" LDFLAGS="" --directory src
make[1]: Entering directory `/«PKGBUILDDIR»/src'
g++ -Wall -W -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -g -O2 -g -O2 -Wall -o lastdb Alphabet.cc MultiSequence.cc CyclicSubsetSeed.cc SubsetSuffixArray.cc LastdbArguments.cc io.cc fileMap.cc SubsetSuffixArraySort.cc MultiSequenceQual.cc lastdb.cc
gcc -g -O2 -g -O2 -Wall -c CA_code/lambda_calculator.c
In file included from CA_code/lambda_calculator.c:13:0:
CA_code/ludcmp.c: In function 'ludcmp':
CA_code/ludcmp.c:11:8: warning: 'imax' may be used uninitialized in this function [-Wuninitialized]
CA_code/lambda_calculator.c: In function 'Find_JP':
CA_code/lambda_calculator.c:367:8: warning: 'flag_sign' may be used uninitialized in this function [-Wuninitialized]
g++ -Wall -W -Wcast-qual -Wswitch-enum -Wundef -Wcast-align -Wno-long-long -ansi -pedantic -g -O2 -g -O2 -Wall -o lastal Alphabet.cc MultiSequence.cc CyclicSubsetSeed.cc SubsetSuffixArray.cc LastalArguments.cc io.cc fileMap.cc ScoreMatrix.cc DiagonalTable.cc SegmentPair.cc Alignment.cc XdropAligner.cc SegmentPairPot.cc AlignmentPot.cc GeneralizedAffineGapCosts.cc Centroid.cc LambdaCalculator.cc TwoQualityScoreMatrix.cc OneQualityScoreMatrix.cc QualityPssmMaker.cc GeneticCode.cc Xdrop3FrameAligner.cc gaplessXdrop.cc gaplessPssmXdrop.cc gaplessTwoQualityXdrop.cc AlignmentWrite.cc MultiSequenceQual.cc XdropAlignerPssm.cc lastal.cc lambda_calculator.o
g++ -Igumbel_params -g -O2 -g -O2 -Wall -o lastex Alphabet.cc LastexArguments.cc io.cc ScoreMatrix.cc lastex.cc gumbel_params/*.cpp
gumbel_params/sls_normal_distr_array.hpp:47:15: warning: 'ncbi::blast::Sls::normal_distr_array_for_P_values_calculation' defined but not used [-Wunused-variable]
gumbel_params/sls_normal_distr_array.hpp:47:15: warning: 'ncbi::blast::Sls::normal_distr_array_for_P_values_calculation' defined but not used [-Wunused-variable]
gumbel_params/sls_alp_data.hpp:74:21: warning: 'ncbi::blast::Sls::small_long' defined but not used [-Wunused-variable]
gumbel_params/sls_alp_data.hpp:75:23: warning: 'ncbi::blast::Sls::dbl_max_log' defined but not used [-Wunused-variable]
gumbel_params/njn_dynprogprob.cpp: In member function 'virtual void ncbi::blast::Njn::DynProgProb::clear(Int4, Int4, const double*)':
gumbel_params/njn_dynprogprob.cpp:96:5: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
gumbel_params/njn_dynprogprob.cpp: In member function 'virtual void ncbi::blast::Njn::DynProgProb::update()':
gumbel_params/njn_dynprogprob.cpp:214:12: warning: unused variable 'arrayPos' [-Wunused-variable]
gumbel_params/njn_dynprogproblim.cpp: In member function 'virtual void ncbi::blast::Njn::DynProgProbLim::update()':
gumbel_params/njn_dynprogproblim.cpp:157:12: warning: unused variable 'arrayPos' [-Wunused-variable]
gumbel_params/njn_localmaxstat.cpp: In member function 'void ncbi::blast::Njn::LocalMaxStat::copy(size_t, const Int4*, const double*)':
gumbel_params/njn_localmaxstat.cpp:154:12: warning: unused variable 'j' [-Wunused-variable]
gumbel_params/njn_localmaxstat.cpp:155:10: warning: unused variable 'iter' [-Wunused-variable]
gumbel_params/njn_localmaxstat.cpp:156:10: warning: unused variable 'value' [-Wunused-variable]
gumbel_params/sls_alp_data.hpp: At global scope:
gumbel_params/sls_alp_data.hpp:74:21: warning: 'ncbi::blast::Sls::small_long' defined but not used [-Wunused-variable]
gumbel_params/sls_alp_data.hpp:75:23: warning: 'ncbi::blast::Sls::dbl_max_log' defined but not used [-Wunused-variable]
gumbel_params/njn_localmaxstatmatrix.cpp: In member function 'void ncbi::blast::Njn::LocalMaxStatMatrix::copy(ncbi::blast::Njn::LocalMaxStat, size_t, const Int4* const*, const double*, const double*, size_t)':
gumbel_params/njn_localmaxstatmatrix.cpp:147:12: warning: unused variable 'j' [-Wunused-variable]
gumbel_params/sls_alp_data.hpp:74:21: warning: 'ncbi::blast::Sls::small_long' defined but not used [-Wunused-variable]
gumbel_params/sls_alp_data.hpp:75:23: warning: 'ncbi::blast::Sls::dbl_max_log' defined but not used [-Wunused-variable]
gumbel_params/sls_alp.cpp: In member function 'bool ncbi::blast::Sls::alp::one_step_of_importance_sampling_without_weight_calculation(Int4, Int4)':
gumbel_params/sls_alp.cpp:470:14: warning: variable 'previous_state_' set but not used [-Wunused-but-set-variable]
gumbel_params/sls_alp.cpp:474:14: warning: variable 'length1_change_' set but not used [-Wunused-but-set-variable]
gumbel_params/sls_alp.cpp:475:14: warning: variable 'length2_change_' set but not used [-Wunused-but-set-variable]
gumbel_params/sls_alp.cpp: In member function 'void ncbi::blast::Sls::alp::increment_H_weights_with_sentinels(Int4)':
gumbel_params/sls_alp.cpp:1435:14: warning: unused variable 'gap_tmp' [-Wunused-variable]
gumbel_params/sls_alp_data.hpp: At global scope:
gumbel_params/sls_alp_data.hpp:75:23: warning: 'ncbi::blast::Sls::dbl_max_log' defined but not used [-Wunused-variable]
gumbel_params/sls_alp_data.hpp:74:21: warning: 'ncbi::blast::Sls::small_long' defined but not used [-Wunused-variable]
gumbel_params/sls_alp_data.hpp:75:23: warning: 'ncbi::blast::Sls::dbl_max_log' defined but not used [-Wunused-variable]
gumbel_params/sls_alp_regression.cpp: In static member function 'static double ncbi::blast::Sls::alp_reg::function_for_robust_regression_sum_with_cut_LSM(double*, double*, Int4, Int4, double, double&, double&, double&, double&, bool&)':
gumbel_params/sls_alp_regression.cpp:389:16: warning: unused variable 'a11_error' [-Wunused-variable]
gumbel_params/sls_alp_regression.cpp:390:16: warning: unused variable 'a12_error' [-Wunused-variable]
gumbel_params/sls_alp_regression.cpp:391:16: warning: unused variable 'a21_error' [-Wunused-variable]
gumbel_params/sls_alp_regression.cpp:392:16: warning: unused variable 'a22_error' [-Wunused-variable]
gumbel_params/sls_alp_regression.cpp: In static member function 'static void ncbi::blast::Sls::alp_reg::robust_regression_sum_with_cut_LSM_beta1_is_defined(Int4, Int4, double*, double*, bool, bool, double, double&, double, double&, double, Int4&, Int4&, bool&)':
gumbel_params/sls_alp_regression.cpp:521:16: warning: variable 'beta1_opt' set but not used [-Wunused-but-set-variable]
gumbel_params/sls_alp_regression.cpp:523:16: warning: variable 'beta1_opt_error' set but not used [-Wunused-but-set-variable]
gumbel_params/sls_alp_regression.cpp: In static member function 'static double ncbi::blast::Sls::alp_reg::function_for_robust_regression_sum_with_cut_LSM_beta1_is_defined(double*, double*, Int4, Int4, double, double&, double, double&, double, bool&)':
gumbel_params/sls_alp_regression.cpp:596:16: warning: unused variable 'a11_error' [-Wunused-variable]
gumbel_params/sls_alp_regression.cpp:597:16: warning: unused variable 'a12_error' [-Wunused-variable]
gumbel_params/sls_alp_data.hpp: At global scope:
gumbel_params/sls_alp_data.hpp:74:21: warning: 'ncbi::blast::Sls::small_long' defined but not used [-Wunused-variable]
gumbel_params/sls_alp_data.hpp:75:23: warning: 'ncbi::blast::Sls::dbl_max_log' defined but not used [-Wunused-variable]
gumbel_params/sls_alp_sim.cpp: In constructor 'ncbi::blast::Sls::alp_sim::alp_sim(ncbi::blast::Sls::alp_data*)':
gumbel_params/sls_alp_sim.cpp:477:24: warning: unused variable 'memory_after2' [-Wunused-variable]
gumbel_params/sls_alp_sim.cpp:724:24: warning: unused variable 'memory_after3' [-Wunused-variable]
gumbel_params/sls_alp_data.hpp: At global scope:
gumbel_params/sls_alp_data.hpp:74:21: warning: 'ncbi::blast::Sls::small_long' defined but not used [-Wunused-variable]
gumbel_params/sls_alp_data.hpp:74:21: warning: 'ncbi::blast::Sls::small_long' defined but not used [-Wunused-variable]
gumbel_params/sls_alp_data.hpp:75:23: warning: 'ncbi::blast::Sls::dbl_max_log' defined but not used [-Wunused-variable]
make[1]: Leaving directory `/«PKGBUILDDIR»/src'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
mkdir -p /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1/
help2man --no-info --name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \
--version-string="178" \
/«PKGBUILDDIR»/scripts/last-dotplot.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-dotplot.1
help2man --no-info --name="genome-scale comparison of biological sequences" \
--version-string="178" --help-option="-h" \
/«PKGBUILDDIR»/src/lastal > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//lastal.1
help2man --no-info --name="genome-scale comparison of biological sequences" \
--version-string="178" --help-option="-h" \
/«PKGBUILDDIR»/src/lastdb > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//lastdb.1
help2man --no-info --version-string="178" \
--name="Sort MAF-format alignments by sequence name" \
/«PKGBUILDDIR»/scripts/maf-sort.sh > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-sort.1
help2man --no-info --version-string="178" \
--name="changes the order of the sequences in MAF-format alignments" \
/«PKGBUILDDIR»/scripts/maf-swap.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-swap.1
help2man --no-info --version-string="178" \
--name="Add extra column with mapping probabilities" \
/«PKGBUILDDIR»/scripts/last-map-probs.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-map-probs.1
help2man --no-info --version-string="178" \
--name="Clean up MAF-format alignments" \
/«PKGBUILDDIR»/scripts/last-reduce-alignments.sh > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-reduce-alignments.1
help2man --no-info --version-string="178" \
--name='Remove MAF-format alignments which are "dominated" by others' \
/«PKGBUILDDIR»/scripts/last-remove-dominated.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-remove-dominated.1
help2man --no-info --version-string="178" \
--name="Join two or more sets of MAF-format multiple alignments" \
/«PKGBUILDDIR»/scripts/maf-join.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-join.1
help2man --no-info --version-string="178" \
--name="Convert MAF-format alignments to tabular format" \
/«PKGBUILDDIR»/scripts/maf-convert.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-convert.1
help2man --no-info --version-string="178" \
--name="Cull alignments whose top\-sequence coordinates are contained in LIMIT or more" \
/«PKGBUILDDIR»/scripts/maf-cull.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-cull.1
help2man --no-info --version-string="178" \
--name="Read alignments of paired DNA reads to a genome" \
/«PKGBUILDDIR»/scripts/last-pair-probs.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-pair-probs.1
fakeroot debian/rules binary
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
DEB_MAKE_CHECK_TARGET unset, not running checks
mkdir -p /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1/
help2man --no-info --name='make a dotplot, a.k.a. Oxford Grid, of alignments in LAST tabular format' \
--version-string="178" \
/«PKGBUILDDIR»/scripts/last-dotplot.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-dotplot.1
help2man --no-info --name="genome-scale comparison of biological sequences" \
--version-string="178" --help-option="-h" \
/«PKGBUILDDIR»/src/lastal > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//lastal.1
help2man --no-info --name="genome-scale comparison of biological sequences" \
--version-string="178" --help-option="-h" \
/«PKGBUILDDIR»/src/lastdb > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//lastdb.1
help2man --no-info --version-string="178" \
--name="Sort MAF-format alignments by sequence name" \
/«PKGBUILDDIR»/scripts/maf-sort.sh > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-sort.1
help2man --no-info --version-string="178" \
--name="changes the order of the sequences in MAF-format alignments" \
/«PKGBUILDDIR»/scripts/maf-swap.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-swap.1
help2man --no-info --version-string="178" \
--name="Add extra column with mapping probabilities" \
/«PKGBUILDDIR»/scripts/last-map-probs.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-map-probs.1
help2man --no-info --version-string="178" \
--name="Clean up MAF-format alignments" \
/«PKGBUILDDIR»/scripts/last-reduce-alignments.sh > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-reduce-alignments.1
help2man --no-info --version-string="178" \
--name='Remove MAF-format alignments which are "dominated" by others' \
/«PKGBUILDDIR»/scripts/last-remove-dominated.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-remove-dominated.1
help2man --no-info --version-string="178" \
--name="Join two or more sets of MAF-format multiple alignments" \
/«PKGBUILDDIR»/scripts/maf-join.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-join.1
help2man --no-info --version-string="178" \
--name="Convert MAF-format alignments to tabular format" \
/«PKGBUILDDIR»/scripts/maf-convert.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-convert.1
help2man --no-info --version-string="178" \
--name="Cull alignments whose top\-sequence coordinates are contained in LIMIT or more" \
/«PKGBUILDDIR»/scripts/maf-cull.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//maf-cull.1
help2man --no-info --version-string="178" \
--name="Read alignments of paired DNA reads to a genome" \
/«PKGBUILDDIR»/scripts/last-pair-probs.py > /«PKGBUILDDIR»/debian/last-align/usr/share/man/man1//last-pair-probs.1
DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target
Adding cdbs dependencies to debian/last-align.substvars
dh_installdirs -plast-align
dh_installdocs -plast-align
dh_installexamples -plast-align
dh_installman -plast-align
dh_installinfo -plast-align
dh_installmenu -plast-align
dh_installcron -plast-align
dh_installinit -plast-align
dh_installdebconf -plast-align
dh_installemacsen -plast-align
dh_installcatalogs -plast-align
dh_installpam -plast-align
dh_installlogrotate -plast-align
dh_installlogcheck -plast-align
dh_installchangelogs -plast-align ChangeLog.txt
dh_installudev -plast-align
dh_lintian -plast-align
dh_bugfiles -plast-align
dh_install -plast-align
dh_link -plast-align
dh_installmime -plast-align
dh_installgsettings -plast-align
dh_strip -plast-align
dh_compress -plast-align
dh_fixperms -plast-align
dh_makeshlibs -plast-align
prename 's/.py$//' debian/last-align/usr/bin/*py
prename 's/.sh$//' debian/last-align/usr/bin/*sh
dh_installdeb -plast-align
dh_perl -plast-align
dh_shlibdeps -plast-align
dh_gencontrol -plast-align
dh_md5sums -plast-align
dh_builddeb -plast-align
dpkg-deb: building package `last-align' in `../last-align_178-1_amd64.deb'.
dpkg-genchanges >../last-align_178-1_amd64.changes
dpkg-genchanges: including full source code in upload
dpkg-source --after-build last-align-178
dpkg-buildpackage: full upload (original source is included)
????????????????????????????????????????????????????????????????????????????????
Build finished at 20110630-1356
Finished
????????
I: Built successfully
????????????????????????????????????????????????????????????????????????????????
? Changes ?
????????????????????????????????????????????????????????????????????????????????
last-align_178-1_amd64.changes:
???????????????????????????????
Format: 1.8
Date: Thu, 30 Jun 2011 13:53:03 +0900
Source: last-align
Binary: last-align
Architecture: source amd64
Version: 178-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
last-align - genome-scale comparison of biological sequences
Changes:
last-align (178-1) unstable; urgency=low
.
* New upstream release changing format of lastal output (r177).
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Files:
980ed47dbc0b9286020c074b4f5bff49 1127 science optional last-align_178-1.dsc
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30f60b5c4912cf1b14386d7816ced37a 326068 science optional last-align_178-1_amd64.deb
????????????????????????????????????????????????????????????????????????????????
? Package contents ?
????????????????????????????????????????????????????????????????????????????????
last-align_178-1_amd64.deb
??????????????????????????
new debian package, version 2.0.
size 326068 bytes: control archive= 2420 bytes.
1160 bytes, 24 lines control
3805 bytes, 54 lines md5sums
Package: last-align
Version: 178-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 784
Depends: libc6 (>= 2.2.5), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0)
Recommends: python, python-imaging
Section: science
Priority: optional
Homepage: http://last.cbrc.jp/
Description: genome-scale comparison of biological sequences
LAST is software for comparing and aligning sequences, typically DNA or
protein sequences. LAST is similar to BLAST, but it copes better with very
large amounts of sequence data. Here are two things LAST is good at:
.
* Comparing large (e.g. mammalian) genomes.
* Mapping lots of sequence tags onto a genome.
.
The main technical innovation is that LAST finds initial matches based on
their multiplicity, instead of using a fixed size (e.g. BLAST uses 10-mers).
This allows one to map tags to genomes without repeat-masking, without becoming
overwhelmed by repetitive hits. To find these variable-sized matches, it uses
a suffix array (inspired by Vmatch). To achieve high sensitivity, it uses a
discontiguous suffix array, analogous to spaced seeds.
drwxr-xr-x root/root 0 2011-06-30 13:55 ./
drwxr-xr-x root/root 0 2011-06-30 13:56 ./usr/
drwxr-xr-x root/root 0 2011-06-30 13:56 ./usr/bin/
-rwxr-xr-x root/root 1187 2011-06-10 19:03 ./usr/bin/last-reduce-alignments
-rwxr-xr-x root/root 14238 2011-06-10 19:03 ./usr/bin/last-pair-probs
-rwxr-xr-x root/root 4594 2011-06-10 19:03 ./usr/bin/last-map-probs
-rwxr-xr-x root/root 295480 2011-06-30 13:56 ./usr/bin/lastal
-rwxr-xr-x root/root 8992 2011-06-10 19:03 ./usr/bin/maf-join
-rwxr-xr-x root/root 9590 2011-06-10 19:03 ./usr/bin/last-dotplot
-rwxr-xr-x root/root 2027 2011-06-10 19:03 ./usr/bin/maf-sort
-rwxr-xr-x root/root 104544 2011-06-30 13:56 ./usr/bin/lastdb
-rwxr-xr-x root/root 20318 2011-06-10 19:03 ./usr/bin/maf-convert
-rwxr-xr-x root/root 5992 2011-06-10 19:03 ./usr/bin/last-remove-dominated
-rwxr-xr-x root/root 4266 2011-06-10 19:03 ./usr/bin/maf-cull
-rwxr-xr-x root/root 4762 2011-06-10 19:03 ./usr/bin/maf-swap
drwxr-xr-x root/root 0 2011-06-30 13:55 ./usr/share/
drwxr-xr-x root/root 0 2011-06-30 13:55 ./usr/share/man/
drwxr-xr-x root/root 0 2011-06-30 13:56 ./usr/share/man/man1/
-rw-r--r-- root/root 305 2011-06-30 13:55 ./usr/share/man/man1/maf-sort.1.gz
-rw-r--r-- root/root 465 2011-06-30 13:55 ./usr/share/man/man1/maf-convert.1.gz
-rw-r--r-- root/root 358 2011-06-30 13:55 ./usr/share/man/man1/maf-cull.1.gz
-rw-r--r-- root/root 525 2011-06-30 13:55 ./usr/share/man/man1/last-dotplot.1.gz
-rw-r--r-- root/root 598 2011-06-30 13:55 ./usr/share/man/man1/lastdb.1.gz
-rw-r--r-- root/root 274 2011-06-30 13:55 ./usr/share/man/man1/maf-join.1.gz
-rw-r--r-- root/root 472 2011-06-30 13:55 ./usr/share/man/man1/last-map-probs.1.gz
-rw-r--r-- root/root 331 2011-06-30 13:55 ./usr/share/man/man1/maf-swap.1.gz
-rw-r--r-- root/root 294 2011-06-30 13:55 ./usr/share/man/man1/last-reduce-alignments.1.gz
-rw-r--r-- root/root 289 2011-06-30 13:55 ./usr/share/man/man1/last-remove-dominated.1.gz
-rw-r--r-- root/root 613 2011-06-30 13:55 ./usr/share/man/man1/last-pair-probs.1.gz
-rw-r--r-- root/root 1200 2011-06-30 13:55 ./usr/share/man/man1/lastal.1.gz
drwxr-xr-x root/root 0 2011-06-30 13:55 ./usr/share/doc-base/
-rw-r--r-- root/root 294 2008-12-28 21:36 ./usr/share/doc-base/last-align-seeds
-rw-r--r-- root/root 281 2011-03-12 07:51 ./usr/share/doc-base/last-align-manual
-rw-r--r-- root/root 293 2009-04-08 20:19 ./usr/share/doc-base/last-align-scripts
-rw-r--r-- root/root 486 2010-06-24 19:06 ./usr/share/doc-base/last-align-lastex
drwxr-xr-x root/root 0 2011-06-30 13:55 ./usr/share/doc/
drwxr-xr-x root/root 0 2011-06-30 13:56 ./usr/share/doc/last-align/
-rw-r--r-- root/root 1931 2011-06-10 19:03 ./usr/share/doc/last-align/lastdb.txt.gz
drwxr-xr-x root/root 0 2011-06-30 13:56 ./usr/share/doc/last-align/examples/
-rw-r--r-- root/root 5562 2011-06-10 19:03 ./usr/share/doc/last-align/examples/humanMito.fa.gz
-rw-r--r-- root/root 9148 2011-06-10 19:03 ./usr/share/doc/last-align/examples/myalns.maf.gz
-rwxr-xr-x root/root 1256 2011-06-10 19:03 ./usr/share/doc/last-align/examples/multiMito.sh
-rw-r--r-- root/root 41538 2011-06-10 19:03 ./usr/share/doc/last-align/examples/multiMito.maf.gz
-rw-r--r-- root/root 919 2011-06-10 19:03 ./usr/share/doc/last-align/examples/yass.seed
-rw-r--r-- root/root 5424 2011-06-10 19:03 ./usr/share/doc/last-align/examples/mouseMito.fa.gz
-rw-r--r-- root/root 712 2011-06-10 19:03 ./usr/share/doc/last-align/examples/TiTv212
-rw-r--r-- root/root 5504 2011-06-10 19:03 ./usr/share/doc/last-align/examples/chickenMito.fa.gz
-rw-r--r-- root/root 5675 2011-06-10 19:03 ./usr/share/doc/last-align/examples/fuguMito.fa.gz
-rw-r--r-- root/root 539 2011-06-10 19:03 ./usr/share/doc/last-align/examples/vertebrateMito.gc
-rw-r--r-- root/root 697 2011-06-10 19:03 ./usr/share/doc/last-align/examples/HOXD70
-rw-r--r-- root/root 1682 2011-06-10 19:03 ./usr/share/doc/last-align/last-scripts.txt.gz
-rw-r--r-- root/root 2281 2011-06-10 19:03 ./usr/share/doc/last-align/FAQ.txt
-rw-r--r-- root/root 9087 2011-06-10 19:03 ./usr/share/doc/last-align/changelog.gz
-rw-r--r-- root/root 3369 2011-06-10 19:03 ./usr/share/doc/last-align/last-pair-probs.txt
-rw-r--r-- root/root 2635 2011-06-10 19:03 ./usr/share/doc/last-align/lastex.txt.gz
-rw-r--r-- root/root 1601 2011-06-10 19:03 ./usr/share/doc/last-align/maf-convert.txt
-rw-r--r-- root/root 3667 2011-06-10 19:03 ./usr/share/doc/last-align/last-tutorial.txt.gz
-rw-r--r-- root/root 2744 2011-06-30 13:53 ./usr/share/doc/last-align/copyright
-rw-r--r-- root/root 2338 2011-06-10 19:03 ./usr/share/doc/last-align/tag-seeds.txt.gz
-rw-r--r-- root/root 201 2010-05-23 23:43 ./usr/share/doc/last-align/NEWS.Debian.gz
-rw-r--r-- root/root 2782 2011-06-10 19:03 ./usr/share/doc/last-align/last-map-probs.txt
-rw-r--r-- root/root 2753 2011-06-30 13:53 ./usr/share/doc/last-align/changelog.Debian.gz
-rw-r--r-- root/root 1034 2011-06-10 19:03 ./usr/share/doc/last-align/maf-cull.txt
-rw-r--r-- root/root 5021 2011-06-10 19:03 ./usr/share/doc/last-align/lastal.txt.gz
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? Post Build ?
????????????????????????????????????????????????????????????????????????????????
lintian
???????
W: last-align: spelling-error-in-description discontiguous noncontiguous
I: Lintian run was successful.
????????????????????????????????????????????????????????????????????????????????
? Cleanup ?
????????????????????????????????????????????????????????????????????????????????
Purging /«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java libxerces2-java libwrap0 libavalon-framework-java libatk1.0-data
ttf-dejavu-core libx11-data libxalan2-java libdbus-1-3 unzip libcap2
java-common libnspr4-0d java-wrappers default-jre-headless libcairo2
libgnutls26 libcommons-logging-java libtasn1-3 openjdk-6-jre-lib
libfreetype6 libthai-data libcommons-math-java libdatrie1
openjdk-6-jre-headless fontconfig libavahi-common-data libsam-java
libgdk-pixbuf2.0-0 libxcb1 ant libaccess-bridge-java-jni default-jdk libxau6
libpixman-1-0 libcups2 default-jre libxinerama1 libkrb5support0 libgif4
libcommons-net-java libxft2 fontconfig-config libbsf-java
libxml-commons-external-java tzdata-java libice6 libxdmcp6 libgcrypt11
libthai0 libkeyutils1 libasound2 libflac8 libxrender1 libconcurrent-java
libvorbisenc2 libjama-java ucf libasyncns0 libtiff4 libjasper1
libswing-layout-java libxtst6 libavahi-client3 x11-common libx11-6
libfontconfig1 ca-certificates-java openssl libhamcrest-java libpango1.0-0
libsm6 libpulse0 libxdamage1 libxcb-render0 libgssapi-krb5-2 libxi6
libvorbis0a openjdk-6-jdk libbatik-java libxcursor1 libxcb-shm0
libjlibeps-java libxext6 openjdk-6-jre libavahi-common3 liblog4j1.2-java
libcommons-io-java libxrandr2 libnss3-1d ca-certificates libsndfile1
libgtk2.0-0 libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libkrb5-3 libatk1.0-0 libk5crypto3 libjaxp1.3-java libgtk2.0-common
libxfixes3 junit4 libaccess-bridge-java libjargs-java libxcomposite1
liboro-java liblcms1 libunistring0 libxerces2-java debhelper libwrap0
libavalon-framework-java libatk1.0-data ttf-dejavu-core libx11-data
libxalan2-java libdbus-1-3 unzip libpipeline1 libcap2 java-common po-debconf
libpcre3 libnspr4-0d groff-base gettext-base java-wrappers
default-jre-headless libcairo2 libgnutls26 libcommons-logging-java
intltool-debian libtasn1-3 openjdk-6-jre-lib libfreetype6 libthai-data
shared-mime-info libglib2.0-0 libexpat1 libcommons-math-java libdatrie1
openjdk-6-jre-headless fontconfig libavahi-common-data libsam-java
libgdk-pixbuf2.0-0 gettext libxcb1 ant libaccess-bridge-java-jni default-jdk
libxau6 libpixman-1-0 libcups2 default-jre libxinerama1 libkrb5support0
libgif4 libcommons-net-java libxft2 fontconfig-config libbsf-java libcroco3
libxml-commons-external-java tzdata-java libice6 libxdmcp6 libgcrypt11
libthai0 libxml2 libkeyutils1 file libasound2 libflac8 libxrender1
libconcurrent-java libvorbisenc2 libjama-java ucf libasyncns0 libtiff4
libjasper1 libswing-layout-java libjpeg62 libxtst6 libavahi-client3
x11-common libx11-6 man-db libfontconfig1 ca-certificates-java html2text
openssl libhamcrest-java libpango1.0-0 libsm6 libpulse0 libxdamage1
libxcb-render0 libgssapi-krb5-2 libxi6 libvorbis0a openjdk-6-jdk
libbatik-java libxcursor1 libxcb-shm0 libjlibeps-java libxext6 openjdk-6-jre
libavahi-common3 liblog4j1.2-java libcommons-io-java libxrandr2 libnss3-1d
ca-certificates libsndfile1 libsqlite3-0 libgtk2.0-0 libmagic1 libssl1.0.0
libgpg-error0 libogg0
Use 'apt-get autoremove' to remove them.
The following packages will be REMOVED:
cdbs* help2man* libncursesw5* mime-support* python* python-imaging*
python-minimal* python2.6* python2.6-minimal*
sbuild-build-depends-last-align-dummy*
0 upgraded, 0 newly installed, 10 to remove and 0 not upgraded.
After this operation, 19.3 MB disk space will be freed.
(Reading database ... 17579 files and directories currently installed.)
Removing sbuild-build-depends-last-align-dummy ...
Removing cdbs ...
Removing help2man ...
Removing python-imaging ...
Removing python ...
Purging configuration files for python ...
Removing python2.6 ...
Purging configuration files for python2.6 ...
Removing libncursesw5 ...
Purging configuration files for libncursesw5 ...
Removing mime-support ...
Purging configuration files for mime-support ...
Removing python-minimal ...
Removing python2.6-minimal ...
Purging configuration files for python2.6-minimal ...
Processing triggers for man-db ...
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? Summary ?
????????????????????????????????????????????????????????????????????????????????
Architecture: amd64
Build-Space: 10776
Build-Time: 43
Distribution: unstable
Install-Time: 18
Job: last-align_178-1.dsc
Lintian: pass
Package: last-align
Package-Time: 64
Source-Version: 178-1
Space: 10776
Status: successful
Version: 178-1
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Finished at 20110630-1356
Build needed 00:01:04, 10776k disc space
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