[Debian-med-packaging] Bug#658691: FTBFS: missing directory in build

Sun Feb 5 09:55:32 UTC 2012

Package: arb
Version: 5.3-2
Severity: serious
Justification: fails to build from source (but built successfully in the past)

Here's a snippet from a clean sid chroot, full build log attached:
# Move SH/README to docs
cp -a SH/README debian/arb-common/usr/share/doc/arb/README_SH
cp: cannot create regular file `debian/arb-common/usr/share/doc/arb/README_SH': No such file or directory
make[1]: *** [override_dh_install] Error 1
make[1]: Leaving directory `/Â«PKGBUILDDIRÂ»'
make: *** [binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2

-- System Information:
Debian Release: wheezy/sid
  APT prefers precise-updates
  APT policy: (500, 'precise-updates'), (500, 'precise-security'), (500, 'precise-proposed'), (500, 'precise'), (100, 'precise-backports')
Architecture: amd64 (x86_64)

Kernel: Linux 3.2.0-12-generic (SMP w/8 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
-------------- next part --------------
sbuild (Debian sbuild) 0.62.5 (13 Jul 2011) on voyager

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â•‘ arb 5.3-2 (amd64)                                          05 Feb 2012 03:46 â•‘
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Package: arb
Version: 5.3-2
Source Version: 5.3-2
Distribution: sid-amd64-shm
Architecture: amd64

Sessions still open, not unmounting
I: NOTICE: Log filtering will replace 'build/arb-pz5Q0x/arb-5.3' with 'Â«PKGBUILDDIRÂ»'
I: NOTICE: Log filtering will replace 'build/arb-pz5Q0x' with 'Â«BUILDDIRÂ»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-shm-ebdc1b31-c6d3-4119-a53b-5bae6edc06bc' with 'Â«CHROOTÂ»'

â”Œâ”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”
â”‚ Update chroot                                                                â”‚
â””â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”˜

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The following NEW packages will be installed:
  libclass-isa-perl liblzma5 libswitch-perl libtinfo5 python2.7
  python2.7-minimal ucf
The following packages will be upgraded:
  bash binutils debianutils gcc-4.5-base initscripts libc-bin libc-dev-bin
  libc6 libc6-dev libgmp10 libgmpxx4ldbl liblocale-gettext-perl libncurses5
  libncursesw5 libpam-modules libpam-modules-bin libpam-runtime libpam0g
  libreadline6 libselinux1 libslang2 libtext-charwidth-perl libtext-iconv-perl
  linux-libc-dev lsb-base multiarch-support ncurses-bin patch perl perl-base
  perl-modules python python-minimal sysv-rc sysvinit sysvinit-utils
  util-linux xz-utils
38 upgraded, 7 newly installed, 0 to remove and 0 not upgraded.
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Installing new version of config file /etc/init.d/hwclock.sh ...
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Preparing to replace libreadline6 6.2-2 (using .../libreadline6_6.2-8_amd64.deb) ...
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Selecting previously unselected package liblzma5.
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Unpacking liblzma5 (from .../liblzma5_5.1.1alpha+20110809-3_amd64.deb) ...
Setting up liblzma5 (5.1.1alpha+20110809-3) ...
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Preparing to replace multiarch-support 2.13-24 (using .../multiarch-support_2.13-26_amd64.deb) ...
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Preparing to replace gcc-4.5-base 4.5.3-10 (using .../gcc-4.5-base_4.5.3-12_amd64.deb) ...
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Setting up libc-dev-bin (2.13-26) ...
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Setting up libtext-charwidth-perl (0.04-7+b1) ...
Setting up liblocale-gettext-perl (1.05-7+b1) ...
Setting up libtext-iconv-perl (1.7-5) ...
Setting up libncursesw5 (5.9-4) ...
Setting up libgmp10 (2:5.0.3+dfsg-1) ...
Setting up libgmpxx4ldbl (2:5.0.3+dfsg-1) ...
Setting up gcc-4.5-base (4.5.3-12) ...
Setting up patch (2.6.1-3) ...
Setting up python2.7-minimal (2.7.2-13) ...
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Setting up python-minimal (2.7.2-10) ...
Setting up python (2.7.2-10) ...
Setting up binutils (2.22-5) ...
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â”Œâ”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”
â”‚ Fetch source files                                                           â”‚
â””â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”˜

Local sources
â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€

arb_5.3-2.dsc exists in .; copying to chroot

Check arch
â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/Â«BUILDDIRÂ»/resolver-5aZ75a/apt_archive/sbuild-build-depends-core-dummy.deb'.
Sessions still open, not unmounting
Sessions still open, not unmounting
OK
Reading package lists...

â”Œâ”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”
â”‚ Install core build dependencies (apt-based resolver)                         â”‚
â””â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”˜

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/714 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12701 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Sessions still open, not unmounting
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), chrpath, debhelper (>= 8), dpkg-dev (>= 1.15.4), freeglut3-dev | libglu-dev, libglew1.5-dev, libglw1-mesa-dev, libmotif-dev, libpng12-dev, libtiff4-dev, libxaw7-dev, libxml2-utils, libxpm-dev, lynx, openjdk-6-jdk | default-jdk, perl-doc, xsltproc, xutils-dev
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), chrpath, debhelper (>= 8), dpkg-dev (>= 1.15.4), freeglut3-dev, libglew1.5-dev, libglw1-mesa-dev, libmotif-dev, libpng12-dev, libtiff4-dev, libxaw7-dev, libxml2-utils, libxpm-dev, lynx, openjdk-6-jdk, perl-doc, xsltproc, xutils-dev
dpkg-deb: building package `sbuild-build-depends-arb-dummy' in `/Â«BUILDDIRÂ»/resolver-j_yn5S/apt_archive/sbuild-build-depends-arb-dummy.deb'.
Sessions still open, not unmounting
Sessions still open, not unmounting
OK
Reading package lists...

â”Œâ”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”
â”‚ Install arb build dependencies (apt-based resolver)                          â”‚
â””â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”˜

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  adduser bsdmainutils ca-certificates ca-certificates-java chrpath dbus
  debhelper file fontconfig fontconfig-config freeglut3 freeglut3-dev
  gconf2-common gettext gettext-base groff-base html2text intltool-debian
  java-common lesstif2 libasound2 libasyncns0 libatk-wrapper-java
  libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3
  libavahi-common-data libavahi-common3 libbsd0 libcairo2 libcap2 libcroco3
  libcups2 libdatrie1 libdbus-1-3 libdbus-glib-1-2 libdrm2 libffi5 libflac8
  libfontconfig1 libfreetype6 libgconf2-4 libgcrypt11 libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgif4 libgl1-mesa-dev libgl1-mesa-glx
  libglapi-mesa libglew1.6 libglew1.6-dev libglib2.0-0 libglu1-mesa
  libglu1-mesa-dev libglw1-mesa libglw1-mesa-dev libgnutls26 libgpg-error0
  libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libice-dev libice6 libidn11
  libjasper1 libjpeg8 libjpeg8-dev libjson0 libk5crypto3 libkeyutils1
  libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmotif-dev libmotif4
  libnspr4-0d libnss3-1d libogg0 libp11-kit0 libpango1.0-0 libpcre3
  libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpthread-stubs0
  libpthread-stubs0-dev libpulse0 libsasl2-2 libsm-dev libsm6 libsndfile1
  libtasn1-3 libthai-data libthai0 libtiff4 libtiff4-dev libtiffxx0c2
  libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data
  libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxaw7-dev libxcb-render0
  libxcb-shm0 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1
  libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft2 libxi6
  libxinerama1 libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxp6
  libxpm-dev libxpm4 libxrandr2 libxrender1 libxslt1.1 libxt-dev libxt6
  libxtst6 libxxf86vm1 lynx lynx-cur man-db mesa-common-dev openjdk-6-jdk
  openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openssl perl-doc
  po-debconf shared-mime-info ttf-dejavu-core tzdata-java x11-common
  x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev
  x11proto-xext-dev xorg-sgml-doctools xsltproc xtrans-dev xutils-dev
  zlib1g-dev
Suggested packages:
  wamerican wordlist whois vacation dbus-x11 dh-make defoma gettext-doc groff
  curl wget default-jre equivs libasound2-plugins cups-common rng-tools
  glew-utils krb5-doc krb5-user librsvg2-common gvfs libjasper-runtime
  ttf-baekmuk ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
  ttf-arphic-bkai00mp pulseaudio libxcb-doc less www-browser openjdk-6-demo
  openjdk-6-source visualvm icedtea-plugin libnss-mdns sun-java6-fonts
  ttf-sazanami-gothic ttf-kochi-gothic ttf-sazanami-mincho ttf-kochi-mincho
  ttf-wqy-microhei ttf-wqy-zenhei ttf-indic-fonts man-browser libmail-box-perl
Recommended packages:
  autopoint libgl1-mesa-dri libglib2.0-data hicolor-icon-theme libgtk2.0-bin
  krb5-locales x-ttcidfont-conf libsasl2-modules tcpd libx11-doc xml-core
  ttf-dejavu-extra icedtea-netx icedtea-6-jre-cacao icedtea-6-jre-jamvm
  libmail-sendmail-perl
The following NEW packages will be installed:
  adduser bsdmainutils ca-certificates ca-certificates-java chrpath dbus
  debhelper file fontconfig fontconfig-config freeglut3 freeglut3-dev
  gconf2-common gettext gettext-base groff-base html2text intltool-debian
  java-common lesstif2 libasound2 libasyncns0 libatk-wrapper-java
  libatk-wrapper-java-jni libatk1.0-0 libatk1.0-data libavahi-client3
  libavahi-common-data libavahi-common3 libbsd0 libcairo2 libcap2 libcroco3
  libcups2 libdatrie1 libdbus-1-3 libdbus-glib-1-2 libdrm2 libffi5 libflac8
  libfontconfig1 libfreetype6 libgconf2-4 libgcrypt11 libgdk-pixbuf2.0-0
  libgdk-pixbuf2.0-common libgif4 libgl1-mesa-dev libgl1-mesa-glx
  libglapi-mesa libglew1.6 libglew1.6-dev libglib2.0-0 libglu1-mesa
  libglu1-mesa-dev libglw1-mesa libglw1-mesa-dev libgnutls26 libgpg-error0
  libgssapi-krb5-2 libgtk2.0-0 libgtk2.0-common libice-dev libice6 libidn11
  libjasper1 libjpeg8 libjpeg8-dev libjson0 libk5crypto3 libkeyutils1
  libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmotif-dev libmotif4
  libnspr4-0d libnss3-1d libogg0 libp11-kit0 libpango1.0-0 libpcre3
  libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev libpthread-stubs0
  libpthread-stubs0-dev libpulse0 libsasl2-2 libsm-dev libsm6 libsndfile1
  libtasn1-3 libthai-data libthai0 libtiff4 libtiff4-dev libtiffxx0c2
  libunistring0 libvorbis0a libvorbisenc2 libwrap0 libx11-6 libx11-data
  libx11-dev libx11-xcb1 libxau-dev libxau6 libxaw7 libxaw7-dev libxcb-render0
  libxcb-shm0 libxcb1 libxcb1-dev libxcomposite1 libxcursor1 libxdamage1
  libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes3 libxft2 libxi6
  libxinerama1 libxml2 libxml2-utils libxmu-dev libxmu-headers libxmu6 libxp6
  libxpm-dev libxpm4 libxrandr2 libxrender1 libxslt1.1 libxt-dev libxt6
  libxtst6 libxxf86vm1 lynx lynx-cur man-db mesa-common-dev openjdk-6-jdk
  openjdk-6-jre openjdk-6-jre-headless openjdk-6-jre-lib openssl perl-doc
  po-debconf sbuild-build-depends-arb-dummy shared-mime-info ttf-dejavu-core
  tzdata-java x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev
  x11proto-print-dev x11proto-xext-dev xorg-sgml-doctools xsltproc xtrans-dev
  xutils-dev zlib1g-dev
0 upgraded, 168 newly installed, 0 to remove and 0 not upgraded.
Need to get 107 MB/107 MB of archives.
After this operation, 293 MB of additional disk space will be used.
Get:1 http://mirror.anl.gov/pub/debian/ unstable/main libpipeline1 amd64 1.2.0-5 [38.2 kB]
Get:2 http://mirror.anl.gov/pub/debian/ unstable/main libgpg-error0 amd64 1.10-3 [66.8 kB]
Get:3 http://mirror.anl.gov/pub/debian/ unstable/main libgcrypt11 amd64 1.5.0-3 [298 kB]
Get:4 http://mirror.anl.gov/pub/debian/ unstable/main libp11-kit0 amd64 0.10-1 [51.4 kB]
Get:5 http://mirror.anl.gov/pub/debian/ unstable/main libtasn1-3 amd64 2.11-1 [65.9 kB]
Get:6 http://mirror.anl.gov/pub/debian/ unstable/main libgnutls26 amd64 2.12.16-1 [614 kB]
Get:7 http://mirror.anl.gov/pub/debian/ unstable/main libkeyutils1 amd64 1.5.2-2 [8860 B]
Get:8 http://mirror.anl.gov/pub/debian/ unstable/main libkrb5support0 amd64 1.10+dfsg~beta1-2 [48.6 kB]
Get:9 http://mirror.anl.gov/pub/debian/ unstable/main libk5crypto3 amd64 1.10+dfsg~beta1-2 [109 kB]
Get:10 http://mirror.anl.gov/pub/debian/ unstable/main libkrb5-3 amd64 1.10+dfsg~beta1-2 [389 kB]
Get:11 http://mirror.anl.gov/pub/debian/ unstable/main libgssapi-krb5-2 amd64 1.10+dfsg~beta1-2 [147 kB]
Get:12 http://mirror.anl.gov/pub/debian/ unstable/main libidn11 amd64 1.23-2 [170 kB]
Get:13 http://mirror.anl.gov/pub/debian/ unstable/main libsasl2-2 amd64 2.1.25.dfsg1-3 [120 kB]
Get:14 http://mirror.anl.gov/pub/debian/ unstable/main libldap-2.4-2 amd64 2.4.28-1.1 [240 kB]
Get:15 http://mirror.anl.gov/pub/debian/ unstable/main libpcre3 amd64 8.12-4 [225 kB]
Get:16 http://mirror.anl.gov/pub/debian/ unstable/main libwrap0 amd64 7.6.q-22 [62.2 kB]
Get:17 http://mirror.anl.gov/pub/debian/ unstable/main libasound2 amd64 1.0.24.1-4 [446 kB]
Get:18 http://mirror.anl.gov/pub/debian/ unstable/main libasyncns0 amd64 0.8-4 [13.6 kB]
Get:19 http://mirror.anl.gov/pub/debian/ unstable/main libffi5 amd64 3.0.10-3 [24.8 kB]
Get:20 http://mirror.anl.gov/pub/debian/ unstable/main libglib2.0-0 amd64 2.30.2-6 [1846 kB]
Get:21 http://mirror.anl.gov/pub/debian/ unstable/main libatk1.0-data all 2.2.0-2 [237 kB]
Get:22 http://mirror.anl.gov/pub/debian/ unstable/main libatk1.0-0 amd64 2.2.0-2 [94.6 kB]
Get:23 http://mirror.anl.gov/pub/debian/ unstable/main libfreetype6 amd64 2.4.8-1 [442 kB]
Get:24 http://mirror.anl.gov/pub/debian/ unstable/main ttf-dejavu-core all 2.33-2 [1552 kB]
Get:25 http://mirror.anl.gov/pub/debian/ unstable/main fontconfig-config all 2.8.0-3.1 [219 kB]
Get:26 http://mirror.anl.gov/pub/debian/ unstable/main libfontconfig1 amd64 2.8.0-3.1 [283 kB]
Get:27 http://mirror.anl.gov/pub/debian/ unstable/main libpixman-1-0 amd64 0.24.2-1 [406 kB]
Get:28 http://mirror.anl.gov/pub/debian/ unstable/main libpng12-0 amd64 1.2.46-4 [190 kB]
Get:29 http://mirror.anl.gov/pub/debian/ unstable/main libxau6 amd64 1:1.0.6-4 [17.1 kB]
Get:30 http://mirror.anl.gov/pub/debian/ unstable/main libxdmcp6 amd64 1:1.1.0-4 [22.9 kB]
Get:31 http://mirror.anl.gov/pub/debian/ unstable/main libxcb1 amd64 1.8-1 [49.7 kB]
Get:32 http://mirror.anl.gov/pub/debian/ unstable/main libx11-data all 2:1.4.4-4 [187 kB]
Get:33 http://mirror.anl.gov/pub/debian/ unstable/main libx11-6 amd64 2:1.4.4-4 [889 kB]
Get:34 http://mirror.anl.gov/pub/debian/ unstable/main libxcb-render0 amd64 1.8-1 [18.3 kB]
Get:35 http://mirror.anl.gov/pub/debian/ unstable/main libxcb-shm0 amd64 1.8-1 [9952 B]
Get:36 http://mirror.anl.gov/pub/debian/ unstable/main libxrender1 amd64 1:0.9.6-2 [31.5 kB]
Get:37 http://mirror.anl.gov/pub/debian/ unstable/main libcairo2 amd64 1.10.2-6.2 [933 kB]
Get:38 http://mirror.anl.gov/pub/debian/ unstable/main libdbus-1-3 amd64 1.4.16-1 [164 kB]
Get:39 http://mirror.anl.gov/pub/debian/ unstable/main libdbus-glib-1-2 amd64 0.98-1 [197 kB]
Get:40 http://mirror.anl.gov/pub/debian/ unstable/main libxml2 amd64 2.7.8.dfsg-7 [895 kB]
Get:41 http://mirror.anl.gov/pub/debian/ unstable/main adduser all 3.113+nmu1 [238 kB]
Get:42 http://mirror.anl.gov/pub/debian/ unstable/main dbus amd64 1.4.16-1 [389 kB]
Get:43 http://mirror.anl.gov/pub/debian/ unstable/main gconf2-common all 3.2.3-1 [2008 kB]
Get:44 http://mirror.anl.gov/pub/debian/ unstable/main libgconf2-4 amd64 3.2.3-1 [508 kB]
Get:45 http://mirror.anl.gov/pub/debian/ unstable/main libjpeg8 amd64 8d-1 [134 kB]
Get:46 http://mirror.anl.gov/pub/debian/ unstable/main libjasper1 amd64 1.900.1-13 [159 kB]
Get:47 http://mirror.anl.gov/pub/debian/ unstable/main libtiff4 amd64 3.9.5-2 [199 kB]
Get:48 http://mirror.anl.gov/pub/debian/ unstable/main libgdk-pixbuf2.0-common all 2.24.0-2 [482 kB]
Get:49 http://mirror.anl.gov/pub/debian/ unstable/main libgdk-pixbuf2.0-0 amd64 2.24.0-2 [200 kB]
Get:50 http://mirror.anl.gov/pub/debian/ unstable/main libgtk2.0-common all 2.24.9-1 [6878 kB]
Get:51 http://mirror.anl.gov/pub/debian/ unstable/main libavahi-common-data amd64 0.6.30-6 [133 kB]
Get:52 http://mirror.anl.gov/pub/debian/ unstable/main libavahi-common3 amd64 0.6.30-6 [54.2 kB]
Get:53 http://mirror.anl.gov/pub/debian/ unstable/main libavahi-client3 amd64 0.6.30-6 [59.0 kB]
Get:54 http://mirror.anl.gov/pub/debian/ unstable/main libcups2 amd64 1.5.0-16 [247 kB]
Get:55 http://mirror.anl.gov/pub/debian/ unstable/main libthai-data all 0.1.16-3 [203 kB]
Get:56 http://mirror.anl.gov/pub/debian/ unstable/main libdatrie1 amd64 0.2.5-3 [28.6 kB]
Get:57 http://mirror.anl.gov/pub/debian/ unstable/main libthai0 amd64 0.1.16-3 [44.4 kB]
Get:58 http://mirror.anl.gov/pub/debian/ unstable/main libxft2 amd64 2.2.0-3 [58.1 kB]
Get:59 http://mirror.anl.gov/pub/debian/ unstable/main fontconfig amd64 2.8.0-3.1 [335 kB]
Get:60 http://mirror.anl.gov/pub/debian/ unstable/main libpango1.0-0 amd64 1.29.4-2 [463 kB]
Get:61 http://mirror.anl.gov/pub/debian/ unstable/main libxcomposite1 amd64 1:0.4.3-2 [16.6 kB]
Get:62 http://mirror.anl.gov/pub/debian/ unstable/main libxfixes3 amd64 1:5.0-4 [21.5 kB]
Get:63 http://mirror.anl.gov/pub/debian/ unstable/main libxcursor1 amd64 1:1.1.12-1 [26.8 kB]
Get:64 http://mirror.anl.gov/pub/debian/ unstable/main libxdamage1 amd64 1:1.1.3-2 [14.3 kB]
Get:65 http://mirror.anl.gov/pub/debian/ unstable/main libxext6 amd64 2:1.3.0-3 [52.3 kB]
Get:66 http://mirror.anl.gov/pub/debian/ unstable/main libxi6 amd64 2:1.4.5-1 [67.6 kB]
Get:67 http://mirror.anl.gov/pub/debian/ unstable/main libxinerama1 amd64 2:1.1.1-3 [15.9 kB]
Get:68 http://mirror.anl.gov/pub/debian/ unstable/main libxrandr2 amd64 2:1.3.2-2 [33.5 kB]
Get:69 http://mirror.anl.gov/pub/debian/ unstable/main shared-mime-info amd64 0.90-1 [1014 kB]
Get:70 http://mirror.anl.gov/pub/debian/ unstable/main libgtk2.0-0 amd64 2.24.9-1 [2730 kB]
Get:71 http://mirror.anl.gov/pub/debian/ unstable/main libatk-wrapper-java all 0.30.4-1 [30.6 kB]
Get:72 http://mirror.anl.gov/pub/debian/ unstable/main libatk-wrapper-java-jni amd64 0.30.4-1 [31.6 kB]
Get:73 http://mirror.anl.gov/pub/debian/ unstable/main libcroco3 amd64 0.6.2-2 [122 kB]
Get:74 http://mirror.anl.gov/pub/debian/ unstable/main libdrm2 amd64 2.4.30-1 [436 kB]
Get:75 http://mirror.anl.gov/pub/debian/ unstable/main libogg0 amd64 1.2.2~dfsg-1 [18.6 kB]
Get:76 http://mirror.anl.gov/pub/debian/ unstable/main libflac8 amd64 1.2.1-6 [154 kB]
Get:77 http://mirror.anl.gov/pub/debian/ unstable/main libglapi-mesa amd64 7.11.2-1 [55.8 kB]
Get:78 http://mirror.anl.gov/pub/debian/ unstable/main libxxf86vm1 amd64 1:1.1.1-2 [18.2 kB]
Get:79 http://mirror.anl.gov/pub/debian/ unstable/main libgl1-mesa-glx amd64 7.11.2-1 [156 kB]
Get:80 http://mirror.anl.gov/pub/debian/ unstable/main libglu1-mesa amd64 7.11.2-1 [220 kB]
Get:81 http://mirror.anl.gov/pub/debian/ unstable/main x11-common all 1:7.6+11 [276 kB]
Get:82 http://mirror.anl.gov/pub/debian/ unstable/main libice6 amd64 2:1.0.7-2 [56.5 kB]
Get:83 http://mirror.anl.gov/pub/debian/ unstable/main libsm6 amd64 2:1.2.0-2 [29.8 kB]
Get:84 http://mirror.anl.gov/pub/debian/ unstable/main libxt6 amd64 1:1.1.1-2 [207 kB]
Get:85 http://mirror.anl.gov/pub/debian/ unstable/main libxmu6 amd64 2:1.1.0-3 [63.2 kB]
Get:86 http://mirror.anl.gov/pub/debian/ unstable/main libglew1.6 amd64 1.6.0-4 [124 kB]
Get:87 http://mirror.anl.gov/pub/debian/ unstable/main libxp6 amd64 1:1.0.1-2 [24.3 kB]
Get:88 http://mirror.anl.gov/pub/debian/ unstable/main lesstif2 amd64 1:0.95.2-1 [699 kB]
Get:89 http://mirror.anl.gov/pub/debian/ unstable/main libglw1-mesa amd64 7.11.2-1 [40.1 kB]
Get:90 http://mirror.anl.gov/pub/debian/ unstable/main libnspr4-0d amd64 4.8.9-1 [142 kB]
Get:91 http://mirror.anl.gov/pub/debian/ unstable/main libnss3-1d amd64 3.13.1.with.ckbi.1.88-1 [1160 kB]
Get:92 http://mirror.anl.gov/pub/debian/ unstable/main libcap2 amd64 1:2.22-1 [13.3 kB]
Get:93 http://mirror.anl.gov/pub/debian/ unstable/main libjson0 amd64 0.9-1 [18.8 kB]
Get:94 http://mirror.anl.gov/pub/debian/ unstable/main libvorbis0a amd64 1.3.2-1.1 [122 kB]
Get:95 http://mirror.anl.gov/pub/debian/ unstable/main libvorbisenc2 amd64 1.3.2-1.1 [146 kB]
Get:96 http://mirror.anl.gov/pub/debian/ unstable/main libsndfile1 amd64 1.0.25-4 [240 kB]
Get:97 http://mirror.anl.gov/pub/debian/ unstable/main libx11-xcb1 amd64 2:1.4.4-4 [125 kB]
Get:98 http://mirror.anl.gov/pub/debian/ unstable/main libxtst6 amd64 2:1.2.0-4 [24.1 kB]
Get:99 http://mirror.anl.gov/pub/debian/ unstable/main libpulse0 amd64 1.1-2 [307 kB]
Get:100 http://mirror.anl.gov/pub/debian/ unstable/main libtiffxx0c2 amd64 3.9.5-2 [61.9 kB]
Get:101 http://mirror.anl.gov/pub/debian/ unstable/main libunistring0 amd64 0.9.3-5 [434 kB]
Get:102 http://mirror.anl.gov/pub/debian/ unstable/main libxpm4 amd64 1:3.5.9-4 [48.1 kB]
Get:103 http://mirror.anl.gov/pub/debian/ unstable/main libxaw7 amd64 2:1.0.9-3 [222 kB]
Get:104 http://mirror.anl.gov/pub/debian/ unstable/main openjdk-6-jre-lib all 6b24-1.11-2 [6135 kB]
Get:105 http://mirror.anl.gov/pub/debian/ unstable/main openssl amd64 1.0.0g-1 [682 kB]
Get:106 http://mirror.anl.gov/pub/debian/ unstable/main ca-certificates all 20111211 [175 kB]
Get:107 http://mirror.anl.gov/pub/debian/ unstable/main ca-certificates-java all 20111223 [8710 B]
Get:108 http://mirror.anl.gov/pub/debian/ unstable/main tzdata-java all 2011n-2 [144 kB]
Get:109 http://mirror.anl.gov/pub/debian/ unstable/main java-common all 0.46 [65.8 kB]
Get:110 http://mirror.anl.gov/pub/debian/ unstable/main openjdk-6-jre-headless amd64 6b24-1.11-2 [25.3 MB]
Get:111 http://mirror.anl.gov/pub/debian/ unstable/non-free libmotif4 amd64 2.3.3-5 [1429 kB]
Get:112 http://mirror.anl.gov/pub/debian/ unstable/main bsdmainutils amd64 9.0.1 [210 kB]
Get:113 http://mirror.anl.gov/pub/debian/ unstable/main groff-base amd64 1.21-6 [1150 kB]
Get:114 http://mirror.anl.gov/pub/debian/ unstable/main man-db amd64 2.6.0.2-3 [1015 kB]
Get:115 http://mirror.anl.gov/pub/debian/ unstable/main libmagic1 amd64 5.09-2 [246 kB]
Get:116 http://mirror.anl.gov/pub/debian/ unstable/main file amd64 5.09-2 [52.0 kB]
Get:117 http://mirror.anl.gov/pub/debian/ unstable/main gettext-base amd64 0.18.1.1-5 [154 kB]
Get:118 http://mirror.anl.gov/pub/debian/ unstable/main chrpath amd64 0.13-2 [13.9 kB]
Get:119 http://mirror.anl.gov/pub/debian/ unstable/main html2text amd64 1.3.2a-15 [103 kB]
Get:120 http://mirror.anl.gov/pub/debian/ unstable/main gettext amd64 0.18.1.1-5 [2080 kB]
Get:121 http://mirror.anl.gov/pub/debian/ unstable/main intltool-debian all 0.35.0+20060710.1 [30.8 kB]
Get:122 http://mirror.anl.gov/pub/debian/ unstable/main po-debconf all 1.0.16+nmu2 [224 kB]
Get:123 http://mirror.anl.gov/pub/debian/ unstable/main debhelper all 9.20120115 [693 kB]
Get:124 http://mirror.anl.gov/pub/debian/ unstable/main freeglut3 amd64 2.6.0-1.1 [141 kB]
Get:125 http://mirror.anl.gov/pub/debian/ unstable/main xorg-sgml-doctools all 1:1.10-1 [24.1 kB]
Get:126 http://mirror.anl.gov/pub/debian/ unstable/main x11proto-core-dev all 7.0.22-1 [323 kB]
Get:127 http://mirror.anl.gov/pub/debian/ unstable/main libxau-dev amd64 1:1.0.6-4 [20.6 kB]
Get:128 http://mirror.anl.gov/pub/debian/ unstable/main libxdmcp-dev amd64 1:1.1.0-4 [39.3 kB]
Get:129 http://mirror.anl.gov/pub/debian/ unstable/main x11proto-input-dev all 2.1-1 [145 kB]
Get:130 http://mirror.anl.gov/pub/debian/ unstable/main x11proto-kb-dev all 1.0.5-2 [27.5 kB]
Get:131 http://mirror.anl.gov/pub/debian/ unstable/main xtrans-dev all 1.2.6-2 [101 kB]
Get:132 http://mirror.anl.gov/pub/debian/ unstable/main libpthread-stubs0 amd64 0.3-3 [3228 B]
Get:133 http://mirror.anl.gov/pub/debian/ unstable/main libpthread-stubs0-dev amd64 0.3-3 [3998 B]
Get:134 http://mirror.anl.gov/pub/debian/ unstable/main libxcb1-dev amd64 1.8-1 [86.7 kB]
Get:135 http://mirror.anl.gov/pub/debian/ unstable/main libx11-dev amd64 2:1.4.4-4 [1027 kB]
Get:136 http://mirror.anl.gov/pub/debian/ unstable/main mesa-common-dev amd64 7.11.2-1 [350 kB]
Get:137 http://mirror.anl.gov/pub/debian/ unstable/main x11proto-xext-dev all 7.2.0-3 [255 kB]
Get:138 http://mirror.anl.gov/pub/debian/ unstable/main libxext-dev amd64 2:1.3.0-3 [167 kB]
Get:139 http://mirror.anl.gov/pub/debian/ unstable/main libgl1-mesa-dev amd64 7.11.2-1 [31.8 kB]
Get:140 http://mirror.anl.gov/pub/debian/ unstable/main libglu1-mesa-dev amd64 7.11.2-1 [296 kB]
Get:141 http://mirror.anl.gov/pub/debian/ unstable/main libice-dev amd64 2:1.0.7-2 [143 kB]
Get:142 http://mirror.anl.gov/pub/debian/ unstable/main libsm-dev amd64 2:1.2.0-2 [101 kB]
Get:143 http://mirror.anl.gov/pub/debian/ unstable/main libxt-dev amd64 1:1.1.1-2 [512 kB]
Get:144 http://mirror.anl.gov/pub/debian/ unstable/main freeglut3-dev amd64 2.6.0-1.1 [216 kB]
Get:145 http://mirror.anl.gov/pub/debian/ unstable/main libbsd0 amd64 0.3.0-1 [52.2 kB]
Get:146 http://mirror.anl.gov/pub/debian/ unstable/main libgif4 amd64 4.1.6-9 [41.7 kB]
Get:147 http://mirror.anl.gov/pub/debian/ unstable/main libglew1.6-dev amd64 1.6.0-4 [247 kB]
Get:148 http://mirror.anl.gov/pub/debian/ unstable/main x11proto-print-dev all 1.0.5-2 [14.9 kB]
Get:149 http://mirror.anl.gov/pub/debian/ unstable/non-free libmotif-dev amd64 2.3.3-5 [3157 kB]
Get:150 http://mirror.anl.gov/pub/debian/ unstable/main libglw1-mesa-dev amd64 7.11.2-1 [41.6 kB]
Get:151 http://mirror.anl.gov/pub/debian/ unstable/main libjpeg8-dev amd64 8d-1 [242 kB]
Get:152 http://mirror.anl.gov/pub/debian/ unstable/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3 [192 kB]
Get:153 http://mirror.anl.gov/pub/debian/ unstable/main libpng12-dev amd64 1.2.46-4 [266 kB]
Get:154 http://mirror.anl.gov/pub/debian/ unstable/main libtiff4-dev amd64 3.9.5-2 [333 kB]
Get:155 http://mirror.anl.gov/pub/debian/ unstable/main libxmu-headers all 2:1.1.0-3 [67.0 kB]
Get:156 http://mirror.anl.gov/pub/debian/ unstable/main libxmu-dev amd64 2:1.1.0-3 [71.2 kB]
Get:157 http://mirror.anl.gov/pub/debian/ unstable/main libxpm-dev amd64 1:3.5.9-4 [107 kB]
Get:158 http://mirror.anl.gov/pub/debian/ unstable/main libxaw7-dev amd64 2:1.0.9-3 [483 kB]
Get:159 http://mirror.anl.gov/pub/debian/ unstable/main libxml2-utils amd64 2.7.8.dfsg-7 [93.5 kB]
Get:160 http://mirror.anl.gov/pub/debian/ unstable/main libxslt1.1 amd64 1.1.26-8 [250 kB]
Get:161 http://mirror.anl.gov/pub/debian/ unstable/main openjdk-6-jre amd64 6b24-1.11-2 [235 kB]
Get:162 http://mirror.anl.gov/pub/debian/ unstable/main openjdk-6-jdk amd64 6b24-1.11-2 [11.2 MB]
Get:163 http://mirror.anl.gov/pub/debian/ unstable/main perl-doc all 5.14.2-7 [8166 kB]
Get:164 http://mirror.anl.gov/pub/debian/ unstable/main xsltproc amd64 1.1.26-8 [115 kB]
Get:165 http://mirror.anl.gov/pub/debian/ unstable/main xutils-dev amd64 1:7.6+6 [347 kB]
Get:166 http://mirror.anl.gov/pub/debian/ unstable/main lynx-cur amd64 2.8.8dev.9-3 [2233 kB]
Get:167 http://mirror.anl.gov/pub/debian/ unstable/main lynx all 2.8.8dev.9-3 [221 kB]

Extracting templates from packages: 17%
Extracting templates from packages: 35%
Extracting templates from packages: 53%
Extracting templates from packages: 71%
Extracting templates from packages: 89%
Extracting templates from packages: 100%
Preconfiguring packages ...
Fetched 107 MB in 45s (2332 kB/s)
Selecting previously unselected package libpipeline1.
(Reading database ... 12701 files and directories currently installed.)
Unpacking libpipeline1 (from .../libpipeline1_1.2.0-5_amd64.deb) ...
Selecting previously unselected package libgpg-error0.
Unpacking libgpg-error0 (from .../libgpg-error0_1.10-3_amd64.deb) ...
Selecting previously unselected package libgcrypt11.
Unpacking libgcrypt11 (from .../libgcrypt11_1.5.0-3_amd64.deb) ...
Selecting previously unselected package libp11-kit0.
Unpacking libp11-kit0 (from .../libp11-kit0_0.10-1_amd64.deb) ...
Selecting previously unselected package libtasn1-3.
Unpacking libtasn1-3 (from .../libtasn1-3_2.11-1_amd64.deb) ...
Selecting previously unselected package libgnutls26.
Unpacking libgnutls26 (from .../libgnutls26_2.12.16-1_amd64.deb) ...
Selecting previously unselected package libkeyutils1.
Unpacking libkeyutils1 (from .../libkeyutils1_1.5.2-2_amd64.deb) ...
Selecting previously unselected package libkrb5support0.
Unpacking libkrb5support0 (from .../libkrb5support0_1.10+dfsg~beta1-2_amd64.deb) ...
Selecting previously unselected package libk5crypto3.
Unpacking libk5crypto3 (from .../libk5crypto3_1.10+dfsg~beta1-2_amd64.deb) ...
Selecting previously unselected package libkrb5-3.
Unpacking libkrb5-3 (from .../libkrb5-3_1.10+dfsg~beta1-2_amd64.deb) ...
Selecting previously unselected package libgssapi-krb5-2.
Unpacking libgssapi-krb5-2 (from .../libgssapi-krb5-2_1.10+dfsg~beta1-2_amd64.deb) ...
Selecting previously unselected package libidn11.
Unpacking libidn11 (from .../libidn11_1.23-2_amd64.deb) ...
Selecting previously unselected package libsasl2-2.
Unpacking libsasl2-2 (from .../libsasl2-2_2.1.25.dfsg1-3_amd64.deb) ...
Selecting previously unselected package libldap-2.4-2.
Unpacking libldap-2.4-2 (from .../libldap-2.4-2_2.4.28-1.1_amd64.deb) ...
Selecting previously unselected package libpcre3.
Unpacking libpcre3 (from .../libpcre3_8.12-4_amd64.deb) ...
Selecting previously unselected package libwrap0.
Unpacking libwrap0 (from .../libwrap0_7.6.q-22_amd64.deb) ...
Selecting previously unselected package libasound2.
Unpacking libasound2 (from .../libasound2_1.0.24.1-4_amd64.deb) ...
Selecting previously unselected package libasyncns0.
Unpacking libasyncns0 (from .../libasyncns0_0.8-4_amd64.deb) ...
Selecting previously unselected package libffi5.
Unpacking libffi5 (from .../libffi5_3.0.10-3_amd64.deb) ...
Selecting previously unselected package libglib2.0-0.
Unpacking libglib2.0-0 (from .../libglib2.0-0_2.30.2-6_amd64.deb) ...
Selecting previously unselected package libatk1.0-data.
Unpacking libatk1.0-data (from .../libatk1.0-data_2.2.0-2_all.deb) ...
Selecting previously unselected package libatk1.0-0.
Unpacking libatk1.0-0 (from .../libatk1.0-0_2.2.0-2_amd64.deb) ...
Selecting previously unselected package libfreetype6.
Unpacking libfreetype6 (from .../libfreetype6_2.4.8-1_amd64.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1.
Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3.1_amd64.deb) ...
Selecting previously unselected package libpixman-1-0.
Unpacking libpixman-1-0 (from .../libpixman-1-0_0.24.2-1_amd64.deb) ...
Selecting previously unselected package libpng12-0.
Unpacking libpng12-0 (from .../libpng12-0_1.2.46-4_amd64.deb) ...
Selecting previously unselected package libxau6.
Unpacking libxau6 (from .../libxau6_1%3a1.0.6-4_amd64.deb) ...
Selecting previously unselected package libxdmcp6.
Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-4_amd64.deb) ...
Selecting previously unselected package libxcb1.
Unpacking libxcb1 (from .../libxcb1_1.8-1_amd64.deb) ...
Selecting previously unselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-4_all.deb) ...
Selecting previously unselected package libx11-6.
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Setting up libxi6 (2:1.4.5-1) ...
Setting up libxinerama1 (2:1.1.1-3) ...
Setting up libxrandr2 (2:1.3.2-2) ...
Setting up shared-mime-info (0.90-1) ...
Setting up libgtk2.0-0 (2.24.9-1) ...
Setting up libatk-wrapper-java (0.30.4-1) ...
Setting up libatk-wrapper-java-jni (0.30.4-1) ...
Setting up libcroco3 (0.6.2-2) ...
Setting up libdrm2 (2.4.30-1) ...
Setting up libogg0 (1.2.2~dfsg-1) ...
Setting up libflac8 (1.2.1-6) ...
Setting up libglapi-mesa (7.11.2-1) ...
Setting up libxxf86vm1 (1:1.1.1-2) ...
Setting up libgl1-mesa-glx (7.11.2-1) ...
Setting up libglu1-mesa (7.11.2-1) ...
Setting up libice6 (2:1.0.7-2) ...
Setting up libsm6 (2:1.2.0-2) ...
Setting up libxt6 (1:1.1.1-2) ...
Setting up libxmu6 (2:1.1.0-3) ...
Setting up libglew1.6 (1.6.0-4) ...
Setting up libxp6 (1:1.0.1-2) ...
Setting up lesstif2 (1:0.95.2-1) ...
Setting up libglw1-mesa (7.11.2-1) ...
Setting up libnspr4-0d (4.8.9-1) ...
Setting up libnss3-1d (3.13.1.with.ckbi.1.88-1) ...
Setting up libcap2 (1:2.22-1) ...
Setting up libjson0 (0.9-1) ...
Setting up libvorbis0a (1.3.2-1.1) ...
Setting up libvorbisenc2 (1.3.2-1.1) ...
Setting up libsndfile1 (1.0.25-4) ...
Setting up libx11-xcb1 (2:1.4.4-4) ...
Setting up libxtst6 (2:1.2.0-4) ...
Setting up libpulse0 (1.1-2) ...
Setting up libtiffxx0c2 (3.9.5-2) ...
Setting up libunistring0 (0.9.3-5) ...
Setting up libxpm4 (1:3.5.9-4) ...
Setting up libxaw7 (2:1.0.9-3) ...
Setting up openssl (1.0.0g-1) ...
Setting up ca-certificates (20111211) ...
Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....done.
Setting up tzdata-java (2011n-2) ...
Setting up java-common (0.46) ...
Setting up libmotif4 (2.3.3-5) ...
Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-6) ...
Setting up man-db (2.6.0.2-3) ...
Building database of manual pages ...
Setting up libmagic1 (5.09-2) ...
Setting up file (5.09-2) ...
Setting up gettext-base (0.18.1.1-5) ...
Setting up chrpath (0.13-2) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20120115) ...
Setting up freeglut3 (2.6.0-1.1) ...
Setting up xorg-sgml-doctools (1:1.10-1) ...
Setting up x11proto-core-dev (7.0.22-1) ...
Setting up libxau-dev (1:1.0.6-4) ...
Setting up libxdmcp-dev (1:1.1.0-4) ...
Setting up x11proto-input-dev (2.1-1) ...
Setting up x11proto-kb-dev (1.0.5-2) ...
Setting up xtrans-dev (1.2.6-2) ...
Setting up libpthread-stubs0 (0.3-3) ...
Setting up libpthread-stubs0-dev (0.3-3) ...
Setting up libxcb1-dev (1.8-1) ...
Setting up libx11-dev (2:1.4.4-4) ...
Setting up mesa-common-dev (7.11.2-1) ...
Setting up x11proto-xext-dev (7.2.0-3) ...
Setting up libxext-dev (2:1.3.0-3) ...
Setting up libgl1-mesa-dev (7.11.2-1) ...
Setting up libglu1-mesa-dev (7.11.2-1) ...
Setting up libice-dev (2:1.0.7-2) ...
Setting up libsm-dev (2:1.2.0-2) ...
Setting up libxt-dev (1:1.1.1-2) ...
Setting up freeglut3-dev (2.6.0-1.1) ...
Setting up libbsd0 (0.3.0-1) ...
Setting up libgif4 (4.1.6-9) ...
Setting up libglew1.6-dev (1.6.0-4) ...
Setting up x11proto-print-dev (1.0.5-2) ...
Setting up libmotif-dev (2.3.3-5) ...
Setting up libglw1-mesa-dev (7.11.2-1) ...
Setting up libjpeg8-dev (8d-1) ...
Setting up zlib1g-dev (1:1.2.3.4.dfsg-3) ...
Setting up libpng12-dev (1.2.46-4) ...
Setting up libtiff4-dev (3.9.5-2) ...
Setting up libxmu-headers (2:1.1.0-3) ...
Setting up libxmu-dev (2:1.1.0-3) ...
Setting up libxpm-dev (1:3.5.9-4) ...
Setting up libxaw7-dev (2:1.0.9-3) ...
Setting up libxml2-utils (2.7.8.dfsg-7) ...
Setting up libxslt1.1 (1.1.26-8) ...
Setting up perl-doc (5.14.2-7) ...
Setting up xsltproc (1.1.26-8) ...
Setting up xutils-dev (1:7.6+6) ...
Setting up lynx-cur (2.8.8dev.9-3) ...
update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode.
Setting up lynx (2.8.8dev.9-3) ...
Setting up openjdk-6-jre-lib (6b24-1.11-2) ...
Setting up ca-certificates-java (20111223) ...
Adding debian:spi-cacert-2008.pem
Adding debian:spi-ca-2003.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:Wells_Fargo_Root_CA.pem
Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:ValiCert_Class_2_VA.pem
Adding debian:ValiCert_Class_1_VA.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:UTN_USERFirst_Email_Root_CA.pem
Adding debian:UTN_DATACorp_SGC_Root_CA.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/T??B??TAK_UEKAE_K??k_Sertifika_Hizmet_Sa??lay??c??s??_-_S??r??m_3.pem. Message:
  /etc/ssl/certs/T??B??TAK_UEKAE_K??k_Sertifika_Hizmet_Sa??lay??c??s??_-_S??r??m_3.pem (No such file or directory)
Adding debian:Thawte_Server_CA.pem
Adding debian:Thawte_Premium_Server_CA.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
Adding debian:TDC_OCES_Root_CA.pem
Adding debian:TDC_Internet_Root_CA.pem
Adding debian:TC_TrustCenter__Germany__Class_3_CA.pem
Adding debian:TC_TrustCenter__Germany__Class_2_CA.pem
Adding debian:TC_TrustCenter_Universal_CA_III.pem
Adding debian:TC_TrustCenter_Universal_CA_I.pem
Adding debian:TC_TrustCenter_Class_3_CA_II.pem
Adding debian:TC_TrustCenter_Class_2_CA_II.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:SwissSign_Platinum_CA_-_G2.pem
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:StartCom_Certification_Authority.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:Staat_der_Nederlanden_Root_CA.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:Sonera_Class_1_Root_CA.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:Secure_Global_CA.pem
Adding debian:SecureTrust_CA.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
Adding debian:Root_CA_Generalitat_Valenciana.pem
Adding debian:RSA_Security_2048_v3.pem
Adding debian:RSA_Root_Certificate_1.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
Adding debian:NetLock_Notary_=Class_A=_Root.pem
Adding debian:NetLock_Express_=Class_C=_Root.pem
Adding debian:NetLock_Business_=Class_B=_Root.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F??tan??s??tv??ny.pem. Message:
  /etc/ssl/certs/NetLock_Arany_=Class_Gold=_F??tan??s??tv??ny.pem (No such file or directory)
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:Microsec_e-Szigno_Root_CA.pem
Adding debian:Juur-SK.pem
Adding debian:Izenpe.com.pem
Adding debian:IGC_A.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:GTE_CyberTrust_Global_Root.pem
Adding debian:Firmaprofesional_Root_CA.pem
Adding debian:Equifax_Secure_eBusiness_CA_2.pem
Adding debian:Equifax_Secure_eBusiness_CA_1.pem
Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
Adding debian:Equifax_Secure_CA.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:Entrust.net_Secure_Server_CA.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/EBG_Elektronik_Sertifika_Hizmet_Sa??lay??c??s??.pem. Message:
  /etc/ssl/certs/EBG_Elektronik_Sertifika_Hizmet_Sa??lay??c??s??.pem (No such file or directory)
Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_3.pem
Adding debian:Digital_Signature_Trust_Co._Global_CA_1.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:ComSign_Secured_CA.pem
Adding debian:ComSign_CA.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Certum_Root_CA.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/Certinomis_-_Autorit??_Racine.pem. Message:
  /etc/ssl/certs/Certinomis_-_Autorit??_Racine.pem (No such file or directory)
Adding debian:Certigna.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:CA_Disig.pem
Adding debian:Buypass_Class_3_CA_1.pem
Adding debian:Buypass_Class_2_CA_1.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:ApplicationCA_-_Japanese_Government.pem
Adding debian:America_Online_Root_Certification_Authority_2.pem
Adding debian:America_Online_Root_Certification_Authority_1.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:AddTrust_External_Root.pem
Warning: there was a problem reading the certificate file /etc/ssl/certs/AC_Ra??z_Certic??mara_S.A..pem. Message:
  /etc/ssl/certs/AC_Ra??z_Certic??mara_S.A..pem (No such file or directory)
Adding debian:ACEDICOM_Root.pem
Adding debian:A-Trust-nQual-03.pem
Adding debian:ca.pem
Adding debian:cacert.org.pem
done.
Setting up openjdk-6-jre-headless (6b24-1.11-2) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode.
Setting up openjdk-6-jre (6b24-1.11-2) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode.
Setting up openjdk-6-jdk (6b24-1.11-2) ...
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/appletviewer to provide /usr/bin/appletviewer (appletviewer) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/extcheck to provide /usr/bin/extcheck (extcheck) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javah to provide /usr/bin/javah (javah) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jhat to provide /usr/bin/jhat (jhat) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jsadebugd to provide /usr/bin/jsadebugd (jsadebugd) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/native2ascii to provide /usr/bin/native2ascii (native2ascii) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode.
update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode.
Setting up sbuild-build-depends-arb-dummy (0.invalid.0) ...
Sessions still open, not unmounting

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â”‚ Build environment                                                            â”‚
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Kernel: Linux 3.2.0-12-generic amd64 (x86_64)
Toolchain package versions: binutils_2.22-5 dpkg-dev_1.16.1.2 g++-4.6_4.6.2-12 gcc-4.6_4.6.2-12 libc6-dev_2.13-26 libstdc++6_4.6.2-12 libstdc++6-4.6-dev_4.6.2-12 linux-libc-dev_3.2.2-1
Package versions: adduser_3.113+nmu1 apt_0.8.15.9 apt-utils_0.8.15.9 base-files_6.5 base-passwd_3.5.24 bash_4.2-1 binutils_2.22-5 bsdmainutils_9.0.1 bsdutils_1:2.20.1-1.2 build-essential_11.5 bzip2_1.0.6-1 ca-certificates_20111211 ca-certificates-java_20111223 chrpath_0.13-2 coreutils_8.13-3 cpp_4:4.6.2-4 cpp-4.6_4.6.2-12 dash_0.5.7-2 dbus_1.4.16-1 debconf_1.5.41 debconf-i18n_1.5.41 debhelper_9.20120115 debian-archive-keyring_2010.08.28 debian-keyring_2011.12.01 debianutils_4.2.1 devscripts_2.11.3 diffutils_1:3.2-1 dpkg_1.16.1.2 dpkg-dev_1.16.1.2 e2fslibs_1.42-1 e2fsprogs_1.42-1 fakeroot_1.18.2-1 file_5.09-2 findutils_4.4.2-4 fontconfig_2.8.0-3.1 fontconfig-config_2.8.0-3.1 freeglut3_2.6.0-1.1 freeglut3-dev_2.6.0-1.1 g++_4:4.6.2-4 g++-4.6_4.6.2-12 gcc_4:4.6.2-4 gcc-4.4-base_4.4.6-14 gcc-4.5-base_4.5.3-12 gcc-4.6_4.6.2-12 gcc-4.6-base_4.6.2-12 gconf2-common_3.2.3-1 gettext_0.18.1.1-5 gettext-base_0.18.1.1-5 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.10-1 groff-base_1.21-6 gzip_1.4-2 hostname_3.10 html2text_1.3.2a-15 initscripts_2.88dsf-22 insserv_1.14.0-2.2 intltool-debian_0.35.0+20060710.1 java-common_0.46 lesstif2_1:0.95.2-1 libacl1_2.2.51-5 libasound2_1.0.24.1-4 libasyncns0_0.8-4 libatk-wrapper-java_0.30.4-1 libatk-wrapper-java-jni_0.30.4-1 libatk1.0-0_2.2.0-2 libatk1.0-data_2.2.0-2 libattr1_1:2.4.46-5 libavahi-client3_0.6.30-6 libavahi-common-data_0.6.30-6 libavahi-common3_0.6.30-6 libblkid1_2.20.1-1.2 libbsd0_0.3.0-1 libbz2-1.0_1.0.6-1 libc-bin_2.13-26 libc-dev-bin_2.13-26 libc6_2.13-26 libc6-dev_2.13-26 libcairo2_1.10.2-6.2 libcap2_1:2.22-1 libclass-isa-perl_0.36-3 libcloog-ppl0_0.15.11-4 libcomerr2_1.42-1 libcroco3_0.6.2-2 libcups2_1.5.0-16 libdatrie1_0.2.5-3 libdb4.8_4.8.30-11 libdb5.1_5.1.29-1 libdbus-1-3_1.4.16-1 libdbus-glib-1-2_0.98-1 libdpkg-perl_1.16.1.2 libdrm2_2.4.30-1 libexpat1_2.0.1-7.2 libffi5_3.0.10-3 libflac8_1.2.1-6 libfontconfig1_2.8.0-3.1 libfreetype6_2.4.8-1 libgcc1_1:4.6.2-12 libgconf2-4_3.2.3-1 libgcrypt11_1.5.0-3 libgdbm3_1.8.3-10 libgdk-pixbuf2.0-0_2.24.0-2 libgdk-pixbuf2.0-common_2.24.0-2 libgif4_4.1.6-9 libgl1-mesa-dev_7.11.2-1 libgl1-mesa-glx_7.11.2-1 libglapi-mesa_7.11.2-1 libglew1.6_1.6.0-4 libglew1.6-dev_1.6.0-4 libglib2.0-0_2.30.2-6 libglu1-mesa_7.11.2-1 libglu1-mesa-dev_7.11.2-1 libglw1-mesa_7.11.2-1 libglw1-mesa-dev_7.11.2-1 libgmp10_2:5.0.3+dfsg-1 libgmpxx4ldbl_2:5.0.3+dfsg-1 libgnutls26_2.12.16-1 libgomp1_4.6.2-12 libgpg-error0_1.10-3 libgssapi-krb5-2_1.10+dfsg~beta1-2 libgtk2.0-0_2.24.9-1 libgtk2.0-common_2.24.9-1 libice-dev_2:1.0.7-2 libice6_2:1.0.7-2 libidn11_1.23-2 libjasper1_1.900.1-13 libjpeg8_8d-1 libjpeg8-dev_8d-1 libjson0_0.9-1 libk5crypto3_1.10+dfsg~beta1-2 libkeyutils1_1.5.2-2 libkrb5-3_1.10+dfsg~beta1-2 libkrb5support0_1.10+dfsg~beta1-2 libldap-2.4-2_2.4.28-1.1 liblocale-gettext-perl_1.05-7+b1 liblzma2_5.0.0-2 liblzma5_5.1.1alpha+20110809-3 libmagic1_5.09-2 libmotif-dev_2.3.3-5 libmotif4_2.3.3-5 libmount1_2.20.1-1.2 libmpc2_0.9-4 libmpfr4_3.1.0-3 libncurses5_5.9-4 libncursesw5_5.9-4 libnspr4-0d_4.8.9-1 libnss3-1d_3.13.1.with.ckbi.1.88-1 libogg0_1.2.2~dfsg-1 libp11-kit0_0.10-1 libpam-modules_1.1.3-7 libpam-modules-bin_1.1.3-7 libpam-runtime_1.1.3-7 libpam0g_1.1.3-7 libpango1.0-0_1.29.4-2 libpcre3_8.12-4 libpipeline1_1.2.0-5 libpixman-1-0_0.24.2-1 libpng12-0_1.2.46-4 libpng12-dev_1.2.46-4 libppl-c4_0.11.2-6 libppl9_0.11.2-6 libpthread-stubs0_0.3-3 libpthread-stubs0-dev_0.3-3 libpulse0_1.1-2 libpwl5_0.11.2-6 libquadmath0_4.6.2-12 libreadline6_6.2-8 libsasl2-2_2.1.25.dfsg1-3 libselinux1_2.1.0-4.1 libsepol1_2.1.0-1.2 libslang2_2.2.4-6 libsm-dev_2:1.2.0-2 libsm6_2:1.2.0-2 libsndfile1_1.0.25-4 libsqlite3-0_3.7.9-3 libss2_1.42-1 libssl1.0.0_1.0.0g-1 libstdc++6_4.6.2-12 libstdc++6-4.6-dev_4.6.2-12 libswitch-perl_2.16-2 libtasn1-3_2.11-1 libtext-charwidth-perl_0.04-7+b1 libtext-iconv-perl_1.7-5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.16-3 libthai0_0.1.16-3 libtiff4_3.9.5-2 libtiff4-dev_3.9.5-2 libtiffxx0c2_3.9.5-2 libtimedate-perl_1.2000-1 libtinfo5_5.9-4 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-20 libuuid1_2.20.1-1.2 libvorbis0a_1.3.2-1.1 libvorbisenc2_1.3.2-1.1 libwrap0_7.6.q-22 libx11-6_2:1.4.4-4 libx11-data_2:1.4.4-4 libx11-dev_2:1.4.4-4 libx11-xcb1_2:1.4.4-4 libxau-dev_1:1.0.6-4 libxau6_1:1.0.6-4 libxaw7_2:1.0.9-3 libxaw7-dev_2:1.0.9-3 libxcb-render0_1.8-1 libxcb-shm0_1.8-1 libxcb1_1.8-1 libxcb1-dev_1.8-1 libxcomposite1_1:0.4.3-2 libxcursor1_1:1.1.12-1 libxdamage1_1:1.1.3-2 libxdmcp-dev_1:1.1.0-4 libxdmcp6_1:1.1.0-4 libxext-dev_2:1.3.0-3 libxext6_2:1.3.0-3 libxfixes3_1:5.0-4 libxft2_2.2.0-3 libxi6_2:1.4.5-1 libxinerama1_2:1.1.1-3 libxml2_2.7.8.dfsg-7 libxml2-utils_2.7.8.dfsg-7 libxmu-dev_2:1.1.0-3 libxmu-headers_2:1.1.0-3 libxmu6_2:1.1.0-3 libxp6_1:1.0.1-2 libxpm-dev_1:3.5.9-4 libxpm4_1:3.5.9-4 libxrandr2_2:1.3.2-2 libxrender1_1:0.9.6-2 libxslt1.1_1.1.26-8 libxt-dev_1:1.1.1-2 libxt6_1:1.1.1-2 libxtst6_2:1.2.0-4 libxxf86vm1_1:1.1.1-2 linux-libc-dev_3.2.2-1 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-28.1 lynx_2.8.8dev.9-3 lynx-cur_2.8.8dev.9-3 make_3.81-8.1 man-db_2.6.0.2-3 mawk_1.3.3-16 mesa-common-dev_7.11.2-1 mime-support_3.51-1 mount_2.20.1-1.2 multiarch-support_2.13-26 ncurses-base_5.9-4 ncurses-bin_5.9-4 openjdk-6-jdk_6b24-1.11-2 openjdk-6-jre_6b24-1.11-2 openjdk-6-jre-headless_6b24-1.11-2 openjdk-6-jre-lib_6b24-1.11-2 openssl_1.0.0g-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-3 perl_5.14.2-7 perl-base_5.14.2-7 perl-doc_5.14.2-7 perl-modules_5.14.2-7 po-debconf_1.0.16+nmu2 python_2.7.2-10 python-minimal_2.7.2-10 python2.6_2.6.7-4 python2.6-minimal_2.6.7-4 python2.7_2.7.2-13 python2.7-minimal_2.7.2-13 readline-common_6.2-8 sbuild-build-depends-arb-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 shared-mime-info_0.90-1 sysv-rc_2.88dsf-22 sysvinit_2.88dsf-22 sysvinit-utils_2.88dsf-22 tar_1.26-4 ttf-dejavu-core_2.33-2 tzdata_2011n-2 tzdata-java_2011n-2 ucf_3.0025+nmu2 util-linux_2.20.1-1.2 x11-common_1:7.6+11 x11proto-core-dev_7.0.22-1 x11proto-input-dev_2.1-1 x11proto-kb-dev_1.0.5-2 x11proto-print-dev_1.0.5-2 x11proto-xext-dev_7.2.0-3 xorg-sgml-doctools_1:1.10-1 xsltproc_1.1.26-8 xtrans-dev_1.2.6-2 xutils-dev_1:7.6+6 xz-utils_5.1.1alpha+20110809-3 zlib1g_1:1.2.3.4.dfsg-3 zlib1g-dev_1:1.2.3.4.dfsg-3

â”Œâ”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”
â”‚ Build                                                                        â”‚
â””â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”˜

Unpack source
â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€

dpkg-source: info: extracting arb in arb-5.3
dpkg-source: info: unpacking arb_5.3.orig.tar.gz
dpkg-source: info: unpacking arb_5.3-2.debian.tar.gz
dpkg-source: info: applying 30_phyml
dpkg-source: info: applying 20_config.makefiles
dpkg-source: info: applying 30_Makefile_main
dpkg-source: info: applying 20_Makefiles
dpkg-source: info: applying 20_tmpfile_issue.patch
dpkg-source: info: applying tmpfile_CVE-2008-5378.patch
Sessions still open, not unmounting
Sessions still open, not unmounting

Check disc space
â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€

Sufficient free space for build
Sessions still open, not unmounting

User Environment
â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€

Sessions still open, not unmounting
HOME=/sbuild-nonexistent
LOGNAME=micah
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_CHROOT_NAME=sid-amd64-shm
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=micah
SCHROOT_SESSION_ID=sid-amd64-shm-ebdc1b31-c6d3-4119-a53b-5bae6edc06bc
SCHROOT_UID=1000
SCHROOT_USER=micah
SHELL=/bin/sh
TERM=xterm
USER=micah

dpkg-buildpackage
â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€

dpkg-buildpackage: source package arb
dpkg-buildpackage: source version 5.3-2
 dpkg-source --before-build arb-5.3
dpkg-buildpackage: host architecture amd64
 fakeroot debian/rules clean
dh clean
   dh_testdir
   debian/rules override_dh_auto_clean
make[1]: Entering directory `/Â«PKGBUILDDIRÂ»'
# Make does only work if config.makefile exists which is only the
# case when quilt has installed the patches.  So there is neither
# a need nor the expection of success if config.makefile is missing
[ ! -f config.makefile ] || /usr/bin/make DEBIAN=1 ARBHOME=/Â«PKGBUILDDIRÂ» clean
make[2]: Entering directory `/Â«PKGBUILDDIRÂ»'
SOURCE_TOOLS/generate_all_links.sh
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/bin'
find . -type l -exec rm {} \;
ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` .
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/bin'
generate_all_links.sh done.
touch SOURCE_TOOLS/generate_all_links.stamp
/usr/bin/make clean2
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE'
rm -f PT_new_design.o PT_family.o PT_prefixtree.o PT_main.o PT_io.o PT_etc.o PT_secundaer.o PT_buildtree.o PT_match.o PT_findEx.o  *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/AISC'
rm -f aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o aisc
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/AISC'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/AISC_MKPTPS'
rm -f mkptypes.o aisc_mkpt
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/AISC_MKPTPS'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/ALIV3'
rm -f a3.o a3_seq.o a3_ptree1.o a3_ptree2.o a3_helix.o a3_darray.o a3_ali.o a3_matrix.o a3_arbdb.o a3_basen.o  *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/ALIV3'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDB'
rm -f adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o *.a *.so
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDB'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDB2'
rm -f adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o ad_config.o *.a *.so
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDB2'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDBPP'
rm -f adtsequence.o adt_edit.o adtali.o adextended.o adseq.o adspecies.o admain.o adali.o  liste.o *.a *.so
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDBPP'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDBS'
rm -f adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDBS'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/ARB_GDE'
rm -f GDE_ParseMenu.o GDE.o GDE_event.o GDE_arbdb_io.o  GDE_HGLfile.o GDE_Genbank.o GDE_FileIO.o *.a 
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARB_GDE'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/AWT'
rm -f AWT_input_mask.o AWT_hotkeys.o AWT_www.o AWT_tables.o AWT_irstree.o AWT_asciiprint.o AWT_map_key.o AWT_tree_cmp.o AWT_seq_colors.o AWT_pro_a_nucs.o AWT_csp.o AWT_canvas.o AWT_dtree.o AWT_tree.o AWT_tree_cb.o AWT_nei.o AWT_filter.o AWT_sel_boxes.o AWT_canio.o AWT_nds.o AWT_query_and_functions.o AWT_file_selection.o AWT_preset.o AWT_seq_dna.o AWT_seq_protein.o AWT_seq_simple_pro.o AWT_codon_table.o AWT_iupac.o AWT_config_manager.o AWT_advice.o AWT_db_browser.o AWT_attributes.o AWT_changekey.o AWT_item_sel_list.o AWT_macro.o AWT_translate.o *.a *.so
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/AWT'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/AWTC'
rm -f AWTC_constructSequence.o AWTC_next_neighbours.o AWTC_seq_search.o AWTC_submission.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/AWTC'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/AWTI'
rm -f AWTI_import.o AWTI_export.o  *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/AWTI'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/CONSENSUS_TREE'
rm -f CT_part.o CT_hash.o CT_ntree.o CT_rbtree.o CT_dtree.o CT_ctree.o CT_mem.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/CONSENSUS_TREE'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/CONVERTALN'
rm -f main.o fconv.o mg.o genbank.o macke.o phylip.o paup.o util.o date.o embl.o gcg.o printable.o alma.o routines.o convert.o /Â«PKGBUILDDIRÂ»/bin/arb_convert_aln
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/CONVERTALN'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/DBSERVER'
rm -f db_server.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/DBSERVER'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/DIST'
rm -f DI_mldist.o DI_protdist.o DI_compress_matrix.o DI_view_matrix.o DI_save_matr.o DI_main.o DI_matr.o distanalyse.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/DIST'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/EDIT'
rm -f edit.o edit_naligner.o edit_tools.o ed_conf.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/EDIT'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/EDIT4'
rm -f ED4_protein_2nd_structure.o ED4_ProteinViewer.o ED4_search.o ED4_cursor.o ED4_dump.o ED4_nds.o ED4_secedit.o ED4_RNA3D.o ED4_main.o ED4_mini_classes.o ED4_edit_string.o ED4_base.o ED4_manager.o ED4_terminal.o ED4_root.o EDB_root_bact.o ED4_window.o ED4_members.o ED4_no_class.o ED4_list.o ED4_text_terminals.o ED4_tools.o ED4_block.o ED4_visualizeSAI.o edit_naligner.o graph_aligner_gui.o ED4_dots.o  *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/EDIT4'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/EISPACK'
rm -f eispack.o d_sign.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/EISPACK'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/GDE'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GDE/CLUSTAL'
rm -f clustalv.o amenu.o myers.o sequence.o showpair.o upgma.o util.o trees.o gcgcheck.o /Â«PKGBUILDDIRÂ»/bin/clustalv
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GDE/CLUSTAL'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GDE/SUPPORT'
rm -f /Â«PKGBUILDDIRÂ»/bin/CAP2 /Â«PKGBUILDDIRÂ»/bin/Restriction /Â«PKGBUILDDIRÂ»/bin/Zuk_to_gen /Â«PKGBUILDDIRÂ»/bin/count /Â«PKGBUILDDIRÂ»/bin/findall /Â«PKGBUILDDIRÂ»/bin/lsadt /Â«PKGBUILDDIRÂ»/bin/sho_helix /Â«PKGBUILDDIRÂ»/bin/varpos
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GDE/SUPPORT'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GDE/AxML'
rm -f axml.o /Â«PKGBUILDDIRÂ»/bin/axml
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GDE/AxML'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GDE/RAxML'
rm -f axml.o raxmlParsimony.o rev_functions.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGeneric.o evaluateGeneric.o newviewGeneric.o makenewzGeneric.o  evaluateGenericVector.o categorizeGeneric.o  /Â«PKGBUILDDIRÂ»/bin/raxmlHPC
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GDE/RAxML'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GDE/PHYML'
rm -f main.o utilities.o optimiz.o lk.o bionj.o models.o free.o options.o simu.o eigen.o /Â«PKGBUILDDIRÂ»/bin/phyml
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GDE/PHYML'
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/GDE'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/GENOM'
rm -f GEN_interface.o GEN_map.o GEN_graphic.o GEN_gene.o GEN_nds.o GEN_color_groups.o GEN_translations.o EXP_interface.o EXP_main.o  *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/GENOM'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/GENOM_IMPORT'
rm -f *.o
rm -f *.a
rm -f *.bak
rm -f *~
rm -f *#
rm -f *\%
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/GENOM_IMPORT'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/GL'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GL/glpng'
rm -f glpng.o *.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GL/glpng'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GL/glAW'
rm -f GLwMDrawA.o AW_window_ogl.o *.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GL/glAW'
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/GL'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/ISLAND_HOPPING'
rm -f island_hopping.o i-hopper.o align.o memory.o trnsprob.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/ISLAND_HOPPING'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/MERGE'
rm -f MG_checkfield.o MG_main.o MG_trees.o MG_alignment.o MG_species.o MG_extendeds.o MG_names.o MG_gene_species.o MG_configs.o MG_preserves.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/MERGE'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/MULTI_PROBE'
rm -f MP_main.o MP_Window.o MP_noclass.o MP_sonde.o MP_sondentopf.o MP_mo_liste.o MP_probe.o MP_GenerationDuplicates.o MP_Generation.o MP_probe_combi_statistic.o MP_probe_tabs.o MP_permute.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/MULTI_PROBE'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/NALIGNER'
rm -f ali_aligner.o ali_arbdb.o ali_global.o ali_main.o ali_pathmap.o ali_prealigner.o ali_profile.o ali_pt.o ali_sequence.o ali_solution.o  *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/NALIGNER'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/NAMES'
rm -f names.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/NAMES'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
rm -f aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o aisc
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/NTREE'
rm -f AP_consensus.o AP_conservProfile2Gnuplot.o AP_cprofile.o AP_csp_2_gnuplot.o AP_pos_var_pars.o NT_cb.o NT_concatenate.o NT_dbrepair.o NT_edconf.o NT_extern.o NT_import.o NT_ins_col.o NT_join.o NT_main.o NT_sort.o NT_trackAliChanges.o NT_validManual.o NT_validNameParser.o NT_validNames.o ad_ali.o ad_ext.o ad_spec.o ad_transpro.o ad_trees.o  *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/NTREE'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/PARSIMONY'
rm -f PARS_main.o PARS_dtree.o PARS_debug.o PARS_klprops.o AP_buffer.o AP_main.o AP_tree_nlen.o AP_tree_edge.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/PARSIMONY'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/PGT'
rm -f main.o dialog.o arb_interface.o main_dialog.o import_dialog.o selection_dialog.o file_import.o tiff_image.o image_dialog.o plot.o analyze_window.o entry_sel_dialog.o config_dialog.o help_dialog.o msgbox.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/PGT'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/PHYLO'
rm -f PH_data.o PH_root.o PH_main.o PH_filt.o PH_display.o PH_matr.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/PHYLO'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/PRIMER_DESIGN'
rm -f PRD_Pair.o PRD_Item.o PRD_Node.o PRD_Range.o PRD_SequenceIterator.o PRD_SearchFIFO.o PRD_Design.o primer_design.o  *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/PRIMER_DESIGN'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
rm -f aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o aisc
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_DESIGN'
rm -f probe_design.o SaiProbeVisualization.o probe_match_parser.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_DESIGN'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_SET'
rm -f ps_node.o ps_filebuffer.o ps_database.o ps_tools.o fb_test.o ps_convert_db.o ps_merge_my_dbs.o ps_detect_weak_differences.o ps_find_probes.o ps_eval_candidates.o ps_get_probes.o ps_my2ascii.o ps_my2asciipaths.o ps_arb2asciipaths.o ps_show_result.o 
rm -f /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_show_result /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_arb2asciipaths /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_my2asciipaths /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_my2ascii /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_get_probes /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_eval /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_find /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_detect /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_merge /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_convert /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/fb_test 
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_SET'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/READSEQ'
rm -f readseq.o ureadseq.o /Â«PKGBUILDDIRÂ»/bin/arb_readseq 
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/READSEQ'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/RNA3D'
rm -f RNA3D_Main.o RNA3D_Interface.o RNA3D_Graphics.o RNA3D_OpenGLEngine.o RNA3D_OpenGLGraphics.o RNA3D_Textures.o RNA3D_StructureData.o RNA3D_Renderer.o  *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/RNA3D'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/SECEDIT'
rm -f SEC_toggle.o SEC_bonddef.o SEC_db.o SEC_helix.o SEC_graphic.o SEC_structure.o SEC_read.o SEC_io.o SEC_paint.o SEC_layout.o SEC_split.o SEC_abspos.o SEC_main.o  *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/SECEDIT'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/SEQ_QUALITY'
rm -f SQ_main.o SQ_functions.o SQ_GroupData.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/SEQ_QUALITY'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/SERVERCNTRL'
rm -f servercntrl.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/SERVERCNTRL'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/SL'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/TREE_READ'
rm -f  TreeRead.o TreeTools.o *.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/TREE_READ'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/TREE_WRITE'
rm -f  TreeWrite.o *.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/TREE_WRITE'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/HELIX'
rm -f  BI_helix.o *.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/HELIX'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/AW_HELIX'
rm -f  AW_helix.o *.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/AW_HELIX'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/AW_NAME'
rm -f  AW_rename.o AW_names_admin.o  *.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/AW_NAME'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/DB_SCANNER'
rm -f  db_scanner.o  *.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/DB_SCANNER'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/FILE_BUFFER'
rm -f  FileBuffer.o  *.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/FILE_BUFFER'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/REGEXPR'
rm -f  RegExpr.o *.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/REGEXPR'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/FAST_ALIGNER'
rm -f  ClustalV.o fast_aligner.o *.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/FAST_ALIGNER'
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/STAT'
rm -f ST_quality.o ST_ml.o ST_window.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/STAT'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/TOOLS'
rm -f /Â«PKGBUILDDIRÂ»/bin/arb_2_ascii /Â«PKGBUILDDIRÂ»/bin/arb_2_bin /Â«PKGBUILDDIRÂ»/bin/arb_a2ps /Â«PKGBUILDDIRÂ»/bin/arb_count_chars /Â«PKGBUILDDIRÂ»/bin/arb_dnarates /Â«PKGBUILDDIRÂ»/bin/arb_export_rates /Â«PKGBUILDDIRÂ»/bin/arb_export_tree /Â«PKGBUILDDIRÂ»/bin/arb_gene_probe /Â«PKGBUILDDIRÂ»/bin/arb_message /Â«PKGBUILDDIRÂ»/bin/arb_notify /Â«PKGBUILDDIRÂ»/bin/arb_primer /Â«PKGBUILDDIRÂ»/bin/arb_probe /Â«PKGBUILDDIRÂ»/bin/arb_proto_2_xsub /Â«PKGBUILDDIRÂ»/bin/arb_read_tree /Â«PKGBUILDDIRÂ»/bin/arb_replace /Â«PKGBUILDDIRÂ»/bin/arb_swap_rnastr
rm -f arb_2_ascii.o arb_2_bin.o arb_a2ps.o arb_count_chars.o arb_dnarates.o arb_export_rates.o arb_export_tree.o arb_gene_probe.o arb_message.o arb_notify.o arb_primer.o arb_probe.o arb_proto_2_xsub.o arb_read_tree.o arb_replace.o arb_swap_rnastr.o
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/TOOLS'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/TREEGEN'
rm -f  base.o defines.o frand.o readcfg.o rns.o sim.o simcfg.o spreadin.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/TREEGEN'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/WETC'
rm -f WETC_main.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/WETC'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/WINDOW'
rm -f AW_position.o AW_Xm.o AW_at.o AW_button.o AW_click.o AW_debug.o AW_device.o AW_font_group.o AW_global_awars.o AW_nawar.o AW_preset.o AW_print.o AW_question.o AW_size.o AW_status.o AW_window.o AW_xfig.o AW_xfigfont.o AW_xfont.o AW_xkey.o AW_window_Xm_interface.o  *.a *.so
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/WINDOW'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/XML'
rm -f xml.o *.a
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/XML'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/GDEHELP'
rm -f MENUS/align.genmenu MENUS/desoete.genmenu MENUS/dnamlrates.genmenu MENUS/export.genmenu MENUS/fastdnaml.genmenu MENUS/import.genmenu MENUS/inc_fastdnaml.genmenu MENUS/phylip_dist.genmenu MENUS/phylip_dist_org.genmenu MENUS/phylip_help.genmenu MENUS/phylip_ml.genmenu MENUS/phylip_pars.genmenu MENUS/pretty_print.genmenu MENUS/puzzle.genmenu MENUS/raxml.genmenu MENUS/start_arb.genmenu MENUS/warning.genmenu ARB_GDEmenus
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GDEHELP'
rm -f ./HELP_GEN/*.help
rm -f ./HELP_DOC_GEN/*.doc
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GDEHELP'
rm -f helpfiles.lst
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/GDEHELP'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE'
rm -f arb_help2xml.o /Â«PKGBUILDDIRÂ»/bin/arb_help2xml
rm -f `find ../lib/help -name "*.hlp"`
rm -f `find ../lib/help_html -name "*.html"`
find: `../lib/help_html': No such file or directory
rm -f xml.stamp dummy _index.html
rm -f `find Xml -name "*.xml"`
find: `Xml': No such file or directory
/usr/bin/make -C genhelp clean
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE/genhelp'
rm -f *.hlp
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE/genhelp'
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/SOURCE_TOOLS'
rm -f generate_all_links.stamp
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/SOURCE_TOOLS'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/bin'
find . -type l            -exec rm {} \;
find . -type f -perm -100 -exec rm {} \;
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/bin'
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/PERL2ARB'
test -f Makefile && /usr/bin/make clean
make[4]: [clean] Error 1 (ignored)
rm -f Makefile.old proto.h debug.h ARB.c ARB.xs .depends depends.stamp Makefile.PL /Â«PKGBUILDDIRÂ»/lib/ARB.pm /Â«PKGBUILDDIRÂ»/lib/ARB.so	
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/PERL2ARB'
rm -f *.last_gcc
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»'
make[2]: Leaving directory `/Â«PKGBUILDDIRÂ»'
# fix broken clean process
find . -type f -name "*.a"  -exec rm -f \{\} \;
find . -type f -name "*.o"  -exec rm -f \{\} \;
find . -type f -name "*.so" -exec rm -f \{\} \;
rm -f `find bin -name "arb*" | grep -v ".pl$"`
rm -f `find AWT ARBDBS ARBDB2 EDIT4 LIBLINK MAKEBIN NALIGNER NAMES_COM ORS_COM PROBE PROBE_COM PROBE_SERVER TOOLS bin lib/inputMasks lib/help -type l`
find: `ORS_COM': No such file or directory
find: `PROBE_SERVER': No such file or directory
rm -f `find . -type f -name ".depends"`
for dir in GENC GENH O ; do \
	   rm -rf `find . -name ${dir} -type d` ; \
	done
rm -f `find bin -maxdepth 1 -type f | grep -v Makefile`
rm -f `find PROBE_WEB/CLIENT -name \*.class -type f`
find: `PROBE_WEB/CLIENT': No such file or directory
rm -f `find PROBE_WEB/CLIENT -name \*.jar -type f`
find: `PROBE_WEB/CLIENT': No such file or directory
rm -f libXm.so.3 NALIGNER/NALIGNER.com lib/nas/names.dat PERL2ARB/Makefile PERL2ARB/ARB.c HELP_SOURCE/date.xsl lib/arb_tcp.dat lib/ARB.pm *.last_gcc TEMPLATES/arb_build.h GDE/MOLPHY/prot_tml.h PERL2ARB/perlmain.c
rm -fr INCLUDE HELP_SOURCE/Xml lib/help lib/help_html PERL5 lib/perl5 PROBE_SERVER/bin PERL2ARB/blib/man3 PROBE_SET/bin
for dtc in AISC AISC_MKPTPS SOURCE_TOOLS; do if [ -d ${dtc} ] ; then cd ${dtc}; make clean ; fi; done
make[2]: Entering directory `/Â«PKGBUILDDIRÂ»/AISC'
rm -f aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o aisc
make[2]: Leaving directory `/Â«PKGBUILDDIRÂ»/AISC'
find . -name "*.stamp" -o -name "*.bs" -o -name ".exists" -delete
make[1]: Leaving directory `/Â«PKGBUILDDIRÂ»'
   dh_clean
 debian/rules build
dh build
   dh_testdir
   dh_auto_configure
   debian/rules override_dh_auto_build
make[1]: Entering directory `/Â«PKGBUILDDIRÂ»'
mkdir -p LIBLINK MAKEBIN lib/help
export LC_ALL=C ; \
	export PATH=/Â«PKGBUILDDIRÂ»/bin:${PATH} ; \
	export LD_LIBRARY_PATH=/Â«PKGBUILDDIRÂ»/lib:${LD_LIBRARY_PATH}; \
	  /usr/bin/make DEBIAN=1 ARBHOME=/Â«PKGBUILDDIRÂ» ARB_64=1 all ; \
	export LD_LIBRARY_PATH=/Â«PKGBUILDDIRÂ»/lib:${LD_LIBRARY_PATH}; \
	  /usr/bin/make DEBIAN=1 ARBHOME=/Â«PKGBUILDDIRÂ» ARB_64=1 arbxtras
make[2]: Entering directory `/Â«PKGBUILDDIRÂ»'
All tools needed for ARB compilation have been located.
GCC version check:
  - Your version is '4.6'
  - Supported gcc version '4.6' detected - fine!

/usr/bin/make check_same_GCC_VERSION
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»'
/Â«PKGBUILDDIRÂ»/SOURCE_TOOLS/check_same_gcc_version.pl 4.6
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»'
Your setup seems to be ok.
/usr/bin/make links
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»'
SOURCE_TOOLS/generate_all_links.sh
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/bin'
find . -type l -exec rm {} \;
ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` .
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/bin'
generate_all_links.sh done.
touch SOURCE_TOOLS/generate_all_links.stamp
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»'
/usr/bin/make com
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»'
-------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/AISC_MKPTPS'
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AISC_MKPTPS -c mkptypes.c 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AISC_MKPTPS -o aisc_mkpt mkptypes.o
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/AISC_MKPTPS'
-------------------------------------------------------------------------------- Make everything in AISC
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/AISC'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc_commands.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
aisc_commands.c: In function 'int do_com_next(const char*)':
aisc_commands.c:906:21: warning: variable 'p' set but not used [-Wunused-but-set-variable]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc_var_ref.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -c aisc_mix.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AISC -o aisc aisc.o aisc_commands.o aisc_var_ref.o aisc_mix.o
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/AISC'
-------------------------------------------------------------------------------- Make everything in NAMES_COM
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
AISC/Makefile:95: .depends: No such file or directory
umask 002;makedepend C/*.c GENC/*.c -I GENH -I C -f- -w1 | grep -v ' /usr' | sed -e 's/^C/O/ig' > .depends_new
makedepend: warning:  C/aisc_extern.c (reading /usr/include/features.h, line 323): cannot find include file "bits/predefs.h"
	not in GENH/bits/predefs.h
	not in C/bits/predefs.h
	not in /usr/include/bits/predefs.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/features.h, line 356): cannot find include file "sys/cdefs.h"
	not in GENH/sys/cdefs.h
	not in C/sys/cdefs.h
	not in /usr/include/sys/cdefs.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/features.h, line 388): cannot find include file "gnu/stubs.h"
	not in GENH/gnu/stubs.h
	not in C/gnu/stubs.h
	not in /usr/include/gnu/stubs.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/stdio.h, line 34): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/stdio.h, line 36): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/_G_config.h, line 9): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/_G_config.h, line 15): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/wchar.h, line 52): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/libio.h, line 53): cannot find include file "stdarg.h"
	not in GENH/stdarg.h
	not in C/stdarg.h
	not in /usr/include/stdarg.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/libio.h, line 62): cannot find include file "sys/cdefs.h"
	not in GENH/sys/cdefs.h
	not in C/sys/cdefs.h
	not in /usr/include/sys/cdefs.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/stdio.h, line 161): cannot find include file "bits/stdio_lim.h"
	not in GENH/bits/stdio_lim.h
	not in C/bits/stdio_lim.h
	not in /usr/include/bits/stdio_lim.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/stdio.h, line 846): cannot find include file "bits/sys_errlist.h"
	not in GENH/bits/sys_errlist.h
	not in C/bits/sys_errlist.h
	not in /usr/include/bits/sys_errlist.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/string.h, line 34): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/aisc_extern.c, line 3: cannot find include file "aisc.h"
	not in GENH/aisc.h
	not in C/aisc.h
	not in /usr/include/aisc.h
makedepend: warning:  C/aisc_extern.c (reading C/aisc_extern_privat.h, line 19): cannot find include file "attributes.h"
	not in GENH/attributes.h
	not in C/attributes.h
	not in /usr/include/attributes.h
makedepend: warning:  C/client.c (reading /usr/include/stdlib.h, line 33): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/client.c (reading /usr/include/stdlib.h, line 42): cannot find include file "bits/waitflags.h"
	not in GENH/bits/waitflags.h
	not in C/bits/waitflags.h
	not in /usr/include/bits/waitflags.h
makedepend: warning:  C/client.c (reading /usr/include/stdlib.h, line 43): cannot find include file "bits/waitstatus.h"
	not in GENH/bits/waitstatus.h
	not in C/bits/waitstatus.h
	not in /usr/include/bits/waitstatus.h
makedepend: warning:  C/client.c (reading /usr/include/stdlib.h, line 320): cannot find include file "sys/types.h"
	not in GENH/sys/types.h
	not in C/sys/types.h
	not in /usr/include/sys/types.h
makedepend: warning:  C/client.c (reading /usr/include/alloca.h, line 25): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/client.c (reading /usr/include/unistd.h, line 203): cannot find include file "bits/posix_opt.h"
	not in GENH/bits/posix_opt.h
	not in C/bits/posix_opt.h
	not in /usr/include/bits/posix_opt.h
makedepend: warning:  C/client.c (reading /usr/include/unistd.h, line 207): cannot find include file "bits/environments.h"
	not in GENH/bits/environments.h
	not in C/bits/environments.h
	not in /usr/include/bits/environments.h
makedepend: warning:  C/client.c (reading /usr/include/unistd.h, line 218): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/client.c (reading /usr/include/unistd.h, line 227): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/client.c (reading /usr/include/unistd.h, line 606): cannot find include file "bits/confname.h"
	not in GENH/bits/confname.h
	not in C/bits/confname.h
	not in /usr/include/bits/confname.h
makedepend: warning:  C/client.c (reading /usr/include/errno.h, line 36): cannot find include file "bits/errno.h"
	not in GENH/bits/errno.h
	not in C/bits/errno.h
	not in /usr/include/bits/errno.h
makedepend: warning:  C/client.c (reading C/ad_varargs.h, line 1): cannot find include file "stdarg.h"
	not in GENH/stdarg.h
	not in C/stdarg.h
	not in /usr/include/stdarg.h
makedepend: warning:  C/client.c, line 9: cannot find include file "sys/time.h"
	not in GENH/sys/time.h
	not in C/sys/time.h
	not in /usr/include/sys/time.h
makedepend: warning:  C/client.c, line 10: cannot find include file "sys/types.h"
	not in GENH/sys/types.h
	not in C/sys/types.h
	not in /usr/include/sys/types.h
makedepend: warning:  C/client.c, line 11: cannot find include file "sys/stat.h"
	not in GENH/sys/stat.h
	not in C/sys/stat.h
	not in /usr/include/sys/stat.h
makedepend: warning:  C/client.c, line 12: cannot find include file "sys/socket.h"
	not in GENH/sys/socket.h
	not in C/sys/socket.h
	not in /usr/include/sys/socket.h
makedepend: warning:  C/client.c, line 13: cannot find include file "sys/un.h"
	not in GENH/sys/un.h
	not in C/sys/un.h
	not in /usr/include/sys/un.h
makedepend: warning:  C/client.c (reading /usr/include/stdint.h, line 27): cannot find include file "bits/wchar.h"
	not in GENH/bits/wchar.h
	not in C/bits/wchar.h
	not in /usr/include/bits/wchar.h
makedepend: warning:  C/client.c (reading /usr/include/stdint.h, line 28): cannot find include file "bits/wordsize.h"
	not in GENH/bits/wordsize.h
	not in C/bits/wordsize.h
	not in /usr/include/bits/wordsize.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/in.h, line 25): cannot find include file "sys/socket.h"
	not in GENH/sys/socket.h
	not in C/sys/socket.h
	not in /usr/include/sys/socket.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/in.h, line 26): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/in.h, line 356): cannot find include file "bits/in.h"
	not in GENH/bits/in.h
	not in C/bits/in.h
	not in /usr/include/bits/in.h
makedepend: warning:  C/client.c (reading /usr/include/endian.h, line 37): cannot find include file "bits/endian.h"
	not in GENH/bits/endian.h
	not in C/bits/endian.h
	not in /usr/include/bits/endian.h
makedepend: warning:  C/client.c (reading /usr/include/endian.h, line 61): cannot find include file "bits/byteswap.h"
	not in GENH/bits/byteswap.h
	not in C/bits/byteswap.h
	not in /usr/include/bits/byteswap.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/in.h, line 376): cannot find include file "bits/byteswap.h"
	not in GENH/bits/byteswap.h
	not in C/bits/byteswap.h
	not in /usr/include/bits/byteswap.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/tcp.h, line 56): cannot find include file "sys/types.h"
	not in GENH/sys/types.h
	not in C/sys/types.h
	not in /usr/include/sys/types.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/tcp.h, line 57): cannot find include file "sys/socket.h"
	not in GENH/sys/socket.h
	not in C/sys/socket.h
	not in /usr/include/sys/socket.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/tcp.h), line 119: #   error "Adjust your <bits/endian.h> defines"
makedepend: warning:  C/client.c (reading /usr/include/rpc/netdb.h, line 42): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/client.c (reading /usr/include/netdb.h, line 43): cannot find include file "bits/netdb.h"
	not in GENH/bits/netdb.h
	not in C/bits/netdb.h
	not in /usr/include/bits/netdb.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 33): cannot find include file "bits/sigset.h"
	not in GENH/bits/sigset.h
	not in C/bits/sigset.h
	not in /usr/include/bits/sigset.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 57): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 58): cannot find include file "bits/signum.h"
	not in GENH/bits/signum.h
	not in C/bits/signum.h
	not in /usr/include/bits/signum.h
makedepend: warning:  C/client.c (reading /usr/include/time.h, line 116): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 79): cannot find include file "bits/siginfo.h"
	not in GENH/bits/siginfo.h
	not in C/bits/siginfo.h
	not in /usr/include/bits/siginfo.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 252): cannot find include file "bits/sigaction.h"
	not in GENH/bits/sigaction.h
	not in C/bits/sigaction.h
	not in /usr/include/bits/sigaction.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 339): cannot find include file "bits/sigcontext.h"
	not in GENH/bits/sigcontext.h
	not in C/bits/sigcontext.h
	not in /usr/include/bits/sigcontext.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 349): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 356): cannot find include file "bits/sigstack.h"
	not in GENH/bits/sigstack.h
	not in C/bits/sigstack.h
	not in /usr/include/bits/sigstack.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 359): cannot find include file "sys/ucontext.h"
	not in GENH/sys/ucontext.h
	not in C/sys/ucontext.h
	not in /usr/include/sys/ucontext.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 394): cannot find include file "bits/pthreadtypes.h"
	not in GENH/bits/pthreadtypes.h
	not in C/bits/pthreadtypes.h
	not in /usr/include/bits/pthreadtypes.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 395): cannot find include file "bits/sigthread.h"
	not in GENH/bits/sigthread.h
	not in C/bits/sigthread.h
	not in /usr/include/bits/sigthread.h
makedepend: warning:  C/client.c (reading C/client.h, line 22): cannot find include file "attributes.h"
	not in GENH/attributes.h
	not in C/attributes.h
	not in /usr/include/attributes.h
makedepend: warning:  C/debug.c, line 6: cannot find include file "aisc_com.h"
	not in GENH/aisc_com.h
	not in C/aisc_com.h
	not in /usr/include/aisc_com.h
makedepend: warning:  C/server.c, line 7: cannot find include file "sys/types.h"
	not in GENH/sys/types.h
	not in C/sys/types.h
	not in /usr/include/sys/types.h
makedepend: warning:  C/server.c, line 8: cannot find include file "sys/socket.h"
	not in GENH/sys/socket.h
	not in C/sys/socket.h
	not in /usr/include/sys/socket.h
makedepend: warning:  C/server.c, line 9: cannot find include file "sys/un.h"
	not in GENH/sys/un.h
	not in C/sys/un.h
	not in /usr/include/sys/un.h
makedepend: warning:  C/server.c, line 13: cannot find include file "sys/stat.h"
	not in GENH/sys/stat.h
	not in C/sys/stat.h
	not in /usr/include/sys/stat.h
makedepend: warning:  C/server.c (reading /usr/include/limits.h, line 125): cannot find include file "limits.h"
makedepend: warning:  C/server.c (reading /usr/include/limits.h, line 145): cannot find include file "bits/posix1_lim.h"
	not in GENH/bits/posix1_lim.h
	not in C/bits/posix1_lim.h
	not in /usr/include/bits/posix1_lim.h
makedepend: warning:  C/server.c (reading /usr/include/limits.h, line 149): cannot find include file "bits/posix2_lim.h"
	not in GENH/bits/posix2_lim.h
	not in C/bits/posix2_lim.h
	not in /usr/include/bits/posix2_lim.h
makedepend: warning:  C/server.c, line 30: cannot find include file "sys/time.h"
	not in GENH/sys/time.h
	not in C/sys/time.h
	not in /usr/include/sys/time.h
makedepend: warning:  C/server.c, line 33: cannot find include file "aisc_com.h"
	not in aisc_com.h
	not in C/aisc_com.h
	not in GENH/aisc_com.h
	not in C/aisc_com.h
	not in /usr/include/aisc_com.h
makedepend: warning:  C/server.c (reading C/server.h, line 22): cannot find include file "attributes.h"
	not in GENH/attributes.h
	not in C/attributes.h
	not in /usr/include/attributes.h
makedepend: warning:  C/server.c (reading ../INCLUDE/arb_assert.h), line 33: #  error Neither DEBUG nor NDEBUG is defined!
makedepend: warning:  C/server.c (reading ../INCLUDE/arb_assert.h, line 183): cannot find include file "arbdb_base.h"
	not in GENH/arbdb_base.h
	not in C/arbdb_base.h
	not in /usr/include/arbdb_base.h
makedepend: warning:  C/struct_man.c, line 5: cannot find include file "aisc.h"
	not in aisc.h
	not in C/aisc.h
	not in GENH/aisc.h
	not in C/aisc.h
	not in /usr/include/aisc.h
makedepend: warning:  C/struct_man.c (reading C/struct_man.h, line 19): cannot find include file "attributes.h"
	not in GENH/attributes.h
	not in C/attributes.h
	not in /usr/include/attributes.h
makedepend: warning:  cannot open "GENC/*.c"
/Â«PKGBUILDDIRÂ»/SOURCE_TOOLS/mv_if_diff .depends_new .depends
..depends created.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
.../MAKEBIN/aisc AISC/aisc.pa names.aisc GENH/aisc.h
.../MAKEBIN/aisc AISC/aisc_com.pa names.aisc GENH/aisc_com.h
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/client.o C/client.c -IGENH -I. -IC
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/debug.o C/debug.c -IGENH -I. -IC
rm -f GENH/aisc_server_extern.aisc
.../MAKEBIN/aisc_mkpt -a C/aisc_extern.c names_extern.c >GENH/aisc_server_extern.aisc
.../MAKEBIN/aisc AISC/aisc_debug_globals.pa names.aisc GENC/aisc_debug_globals.c GENH/aisc_server_extern.aisc GENH/import_proto.h
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_debug_globals.o GENC/aisc_debug_globals.c -IGENH -I. -IC
ld -rpath=/usr/lib/arb/lib -r -o client.a O/client.o O/debug.o GENC/aisc_debug_globals.o
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/server.o C/server.c -IGENH -I. -IC
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/struct_man.o C/struct_man.c -IGENH -I. -IC
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/aisc_extern.o C/aisc_extern.c -IGENH -I. -IC
.../MAKEBIN/aisc AISC/aisc_server.pa names.aisc GENC/aisc_server.c GENH/aisc_server_extern.aisc GENH/import_proto.h
rm -f GENH/aisc_server_proto.h
.../MAKEBIN/aisc_mkpt -C GENC/aisc_server.c >GENH/aisc_server_proto.h
rm -f GENH/aisc_server_extern.h
.../MAKEBIN/aisc_mkpt -C C/aisc_extern.c names_extern.c >GENH/aisc_server_extern.h
.../MAKEBIN/aisc AISC/aisc_global.pa names.aisc GENC/aisc_global.c GENH/aisc_server_extern.aisc GENH/import_proto.h
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_global.o GENC/aisc_global.c -IGENH -I. -IC -DAISC_SAVE_YES
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_server.o GENC/aisc_server.c -IGENH -I. -IC -DAISC_SAVE_YES
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NAMES_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o names_extern.o names_extern.c -IGENH -I. -IC -DAISC_SAVE_YES
ld -rpath=/usr/lib/arb/lib -r -o server.a O/server.o O/struct_man.o O/aisc_extern.o GENC/aisc_global.o GENC/aisc_server.o names_extern.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
-------------------------------------------------------------------------------- Make everything in PROBE_COM
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
AISC/Makefile:95: .depends: No such file or directory
umask 002;makedepend C/*.c GENC/*.c -I GENH -I C -f- -w1 | grep -v ' /usr' | sed -e 's/^C/O/ig' > .depends_new
makedepend: warning:  C/aisc_extern.c (reading /usr/include/features.h, line 323): cannot find include file "bits/predefs.h"
	not in GENH/bits/predefs.h
	not in C/bits/predefs.h
	not in /usr/include/bits/predefs.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/features.h, line 356): cannot find include file "sys/cdefs.h"
	not in GENH/sys/cdefs.h
	not in C/sys/cdefs.h
	not in /usr/include/sys/cdefs.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/features.h, line 388): cannot find include file "gnu/stubs.h"
	not in GENH/gnu/stubs.h
	not in C/gnu/stubs.h
	not in /usr/include/gnu/stubs.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/stdio.h, line 34): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/stdio.h, line 36): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/_G_config.h, line 9): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/_G_config.h, line 15): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/wchar.h, line 52): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/libio.h, line 53): cannot find include file "stdarg.h"
	not in GENH/stdarg.h
	not in C/stdarg.h
	not in /usr/include/stdarg.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/libio.h, line 62): cannot find include file "sys/cdefs.h"
	not in GENH/sys/cdefs.h
	not in C/sys/cdefs.h
	not in /usr/include/sys/cdefs.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/stdio.h, line 161): cannot find include file "bits/stdio_lim.h"
	not in GENH/bits/stdio_lim.h
	not in C/bits/stdio_lim.h
	not in /usr/include/bits/stdio_lim.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/stdio.h, line 846): cannot find include file "bits/sys_errlist.h"
	not in GENH/bits/sys_errlist.h
	not in C/bits/sys_errlist.h
	not in /usr/include/bits/sys_errlist.h
makedepend: warning:  C/aisc_extern.c (reading /usr/include/string.h, line 34): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/aisc_extern.c, line 3: cannot find include file "aisc.h"
	not in GENH/aisc.h
	not in C/aisc.h
	not in /usr/include/aisc.h
makedepend: warning:  C/aisc_extern.c (reading C/aisc_extern_privat.h, line 19): cannot find include file "attributes.h"
	not in GENH/attributes.h
	not in C/attributes.h
	not in /usr/include/attributes.h
makedepend: warning:  C/client.c (reading /usr/include/stdlib.h, line 33): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/client.c (reading /usr/include/stdlib.h, line 42): cannot find include file "bits/waitflags.h"
	not in GENH/bits/waitflags.h
	not in C/bits/waitflags.h
	not in /usr/include/bits/waitflags.h
makedepend: warning:  C/client.c (reading /usr/include/stdlib.h, line 43): cannot find include file "bits/waitstatus.h"
	not in GENH/bits/waitstatus.h
	not in C/bits/waitstatus.h
	not in /usr/include/bits/waitstatus.h
makedepend: warning:  C/client.c (reading /usr/include/stdlib.h, line 320): cannot find include file "sys/types.h"
	not in GENH/sys/types.h
	not in C/sys/types.h
	not in /usr/include/sys/types.h
makedepend: warning:  C/client.c (reading /usr/include/alloca.h, line 25): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/client.c (reading /usr/include/unistd.h, line 203): cannot find include file "bits/posix_opt.h"
	not in GENH/bits/posix_opt.h
	not in C/bits/posix_opt.h
	not in /usr/include/bits/posix_opt.h
makedepend: warning:  C/client.c (reading /usr/include/unistd.h, line 207): cannot find include file "bits/environments.h"
	not in GENH/bits/environments.h
	not in C/bits/environments.h
	not in /usr/include/bits/environments.h
makedepend: warning:  C/client.c (reading /usr/include/unistd.h, line 218): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/client.c (reading /usr/include/unistd.h, line 227): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/client.c (reading /usr/include/unistd.h, line 606): cannot find include file "bits/confname.h"
	not in GENH/bits/confname.h
	not in C/bits/confname.h
	not in /usr/include/bits/confname.h
makedepend: warning:  C/client.c (reading /usr/include/errno.h, line 36): cannot find include file "bits/errno.h"
	not in GENH/bits/errno.h
	not in C/bits/errno.h
	not in /usr/include/bits/errno.h
makedepend: warning:  C/client.c (reading C/ad_varargs.h, line 1): cannot find include file "stdarg.h"
	not in GENH/stdarg.h
	not in C/stdarg.h
	not in /usr/include/stdarg.h
makedepend: warning:  C/client.c, line 9: cannot find include file "sys/time.h"
	not in GENH/sys/time.h
	not in C/sys/time.h
	not in /usr/include/sys/time.h
makedepend: warning:  C/client.c, line 10: cannot find include file "sys/types.h"
	not in GENH/sys/types.h
	not in C/sys/types.h
	not in /usr/include/sys/types.h
makedepend: warning:  C/client.c, line 11: cannot find include file "sys/stat.h"
	not in GENH/sys/stat.h
	not in C/sys/stat.h
	not in /usr/include/sys/stat.h
makedepend: warning:  C/client.c, line 12: cannot find include file "sys/socket.h"
	not in GENH/sys/socket.h
	not in C/sys/socket.h
	not in /usr/include/sys/socket.h
makedepend: warning:  C/client.c, line 13: cannot find include file "sys/un.h"
	not in GENH/sys/un.h
	not in C/sys/un.h
	not in /usr/include/sys/un.h
makedepend: warning:  C/client.c (reading /usr/include/stdint.h, line 27): cannot find include file "bits/wchar.h"
	not in GENH/bits/wchar.h
	not in C/bits/wchar.h
	not in /usr/include/bits/wchar.h
makedepend: warning:  C/client.c (reading /usr/include/stdint.h, line 28): cannot find include file "bits/wordsize.h"
	not in GENH/bits/wordsize.h
	not in C/bits/wordsize.h
	not in /usr/include/bits/wordsize.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/in.h, line 25): cannot find include file "sys/socket.h"
	not in GENH/sys/socket.h
	not in C/sys/socket.h
	not in /usr/include/sys/socket.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/in.h, line 26): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/in.h, line 356): cannot find include file "bits/in.h"
	not in GENH/bits/in.h
	not in C/bits/in.h
	not in /usr/include/bits/in.h
makedepend: warning:  C/client.c (reading /usr/include/endian.h, line 37): cannot find include file "bits/endian.h"
	not in GENH/bits/endian.h
	not in C/bits/endian.h
	not in /usr/include/bits/endian.h
makedepend: warning:  C/client.c (reading /usr/include/endian.h, line 61): cannot find include file "bits/byteswap.h"
	not in GENH/bits/byteswap.h
	not in C/bits/byteswap.h
	not in /usr/include/bits/byteswap.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/in.h, line 376): cannot find include file "bits/byteswap.h"
	not in GENH/bits/byteswap.h
	not in C/bits/byteswap.h
	not in /usr/include/bits/byteswap.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/tcp.h, line 56): cannot find include file "sys/types.h"
	not in GENH/sys/types.h
	not in C/sys/types.h
	not in /usr/include/sys/types.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/tcp.h, line 57): cannot find include file "sys/socket.h"
	not in GENH/sys/socket.h
	not in C/sys/socket.h
	not in /usr/include/sys/socket.h
makedepend: warning:  C/client.c (reading /usr/include/netinet/tcp.h), line 119: #   error "Adjust your <bits/endian.h> defines"
makedepend: warning:  C/client.c (reading /usr/include/rpc/netdb.h, line 42): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/client.c (reading /usr/include/netdb.h, line 43): cannot find include file "bits/netdb.h"
	not in GENH/bits/netdb.h
	not in C/bits/netdb.h
	not in /usr/include/bits/netdb.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 33): cannot find include file "bits/sigset.h"
	not in GENH/bits/sigset.h
	not in C/bits/sigset.h
	not in /usr/include/bits/sigset.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 57): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 58): cannot find include file "bits/signum.h"
	not in GENH/bits/signum.h
	not in C/bits/signum.h
	not in /usr/include/bits/signum.h
makedepend: warning:  C/client.c (reading /usr/include/time.h, line 116): cannot find include file "bits/types.h"
	not in GENH/bits/types.h
	not in C/bits/types.h
	not in /usr/include/bits/types.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 79): cannot find include file "bits/siginfo.h"
	not in GENH/bits/siginfo.h
	not in C/bits/siginfo.h
	not in /usr/include/bits/siginfo.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 252): cannot find include file "bits/sigaction.h"
	not in GENH/bits/sigaction.h
	not in C/bits/sigaction.h
	not in /usr/include/bits/sigaction.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 339): cannot find include file "bits/sigcontext.h"
	not in GENH/bits/sigcontext.h
	not in C/bits/sigcontext.h
	not in /usr/include/bits/sigcontext.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 349): cannot find include file "stddef.h"
	not in GENH/stddef.h
	not in C/stddef.h
	not in /usr/include/stddef.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 356): cannot find include file "bits/sigstack.h"
	not in GENH/bits/sigstack.h
	not in C/bits/sigstack.h
	not in /usr/include/bits/sigstack.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 359): cannot find include file "sys/ucontext.h"
	not in GENH/sys/ucontext.h
	not in C/sys/ucontext.h
	not in /usr/include/sys/ucontext.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 394): cannot find include file "bits/pthreadtypes.h"
	not in GENH/bits/pthreadtypes.h
	not in C/bits/pthreadtypes.h
	not in /usr/include/bits/pthreadtypes.h
makedepend: warning:  C/client.c (reading /usr/include/signal.h, line 395): cannot find include file "bits/sigthread.h"
	not in GENH/bits/sigthread.h
	not in C/bits/sigthread.h
	not in /usr/include/bits/sigthread.h
makedepend: warning:  C/client.c (reading C/client.h, line 22): cannot find include file "attributes.h"
	not in GENH/attributes.h
	not in C/attributes.h
	not in /usr/include/attributes.h
makedepend: warning:  C/debug.c, line 6: cannot find include file "aisc_com.h"
	not in GENH/aisc_com.h
	not in C/aisc_com.h
	not in /usr/include/aisc_com.h
makedepend: warning:  C/server.c, line 7: cannot find include file "sys/types.h"
	not in GENH/sys/types.h
	not in C/sys/types.h
	not in /usr/include/sys/types.h
makedepend: warning:  C/server.c, line 8: cannot find include file "sys/socket.h"
	not in GENH/sys/socket.h
	not in C/sys/socket.h
	not in /usr/include/sys/socket.h
makedepend: warning:  C/server.c, line 9: cannot find include file "sys/un.h"
	not in GENH/sys/un.h
	not in C/sys/un.h
	not in /usr/include/sys/un.h
makedepend: warning:  C/server.c, line 13: cannot find include file "sys/stat.h"
	not in GENH/sys/stat.h
	not in C/sys/stat.h
	not in /usr/include/sys/stat.h
makedepend: warning:  C/server.c (reading /usr/include/limits.h, line 125): cannot find include file "limits.h"
makedepend: warning:  C/server.c (reading /usr/include/limits.h, line 145): cannot find include file "bits/posix1_lim.h"
	not in GENH/bits/posix1_lim.h
	not in C/bits/posix1_lim.h
	not in /usr/include/bits/posix1_lim.h
makedepend: warning:  C/server.c (reading /usr/include/limits.h, line 149): cannot find include file "bits/posix2_lim.h"
	not in GENH/bits/posix2_lim.h
	not in C/bits/posix2_lim.h
	not in /usr/include/bits/posix2_lim.h
makedepend: warning:  C/server.c, line 30: cannot find include file "sys/time.h"
	not in GENH/sys/time.h
	not in C/sys/time.h
	not in /usr/include/sys/time.h
makedepend: warning:  C/server.c, line 33: cannot find include file "aisc_com.h"
	not in aisc_com.h
	not in C/aisc_com.h
	not in GENH/aisc_com.h
	not in C/aisc_com.h
	not in /usr/include/aisc_com.h
makedepend: warning:  C/server.c (reading C/server.h, line 22): cannot find include file "attributes.h"
	not in GENH/attributes.h
	not in C/attributes.h
	not in /usr/include/attributes.h
makedepend: warning:  C/server.c (reading ../INCLUDE/arb_assert.h), line 33: #  error Neither DEBUG nor NDEBUG is defined!
makedepend: warning:  C/server.c (reading ../INCLUDE/arb_assert.h, line 183): cannot find include file "arbdb_base.h"
	not in GENH/arbdb_base.h
	not in C/arbdb_base.h
	not in /usr/include/arbdb_base.h
makedepend: warning:  C/struct_man.c, line 5: cannot find include file "aisc.h"
	not in aisc.h
	not in C/aisc.h
	not in GENH/aisc.h
	not in C/aisc.h
	not in /usr/include/aisc.h
makedepend: warning:  C/struct_man.c (reading C/struct_man.h, line 19): cannot find include file "attributes.h"
	not in GENH/attributes.h
	not in C/attributes.h
	not in /usr/include/attributes.h
makedepend: warning:  cannot open "GENC/*.c"
/Â«PKGBUILDDIRÂ»/SOURCE_TOOLS/mv_if_diff .depends_new .depends
..depends created.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
.../MAKEBIN/aisc AISC/aisc.pa PT.aisc GENH/aisc.h
.../MAKEBIN/aisc AISC/aisc_com.pa PT.aisc GENH/aisc_com.h
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/client.o C/client.c -IGENH -I. -IC
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/debug.o C/debug.c -IGENH -I. -IC
rm -f GENH/aisc_server_extern.aisc
.../MAKEBIN/aisc_mkpt -a C/aisc_extern.c PT_extern.c >GENH/aisc_server_extern.aisc
.../MAKEBIN/aisc AISC/aisc_debug_globals.pa PT.aisc GENC/aisc_debug_globals.c GENH/aisc_server_extern.aisc GENH/import_proto.h
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_debug_globals.o GENC/aisc_debug_globals.c -IGENH -I. -IC
ld -rpath=/usr/lib/arb/lib -r -o client.a O/client.o O/debug.o GENC/aisc_debug_globals.o
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/server.o C/server.c -IGENH -I. -IC
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/struct_man.o C/struct_man.c -IGENH -I. -IC
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o O/aisc_extern.o C/aisc_extern.c -IGENH -I. -IC
.../MAKEBIN/aisc AISC/aisc_server.pa PT.aisc GENC/aisc_server.c GENH/aisc_server_extern.aisc GENH/import_proto.h
rm -f GENH/aisc_server_proto.h
.../MAKEBIN/aisc_mkpt -C GENC/aisc_server.c >GENH/aisc_server_proto.h
rm -f GENH/aisc_server_extern.h
.../MAKEBIN/aisc_mkpt -C C/aisc_extern.c PT_extern.c >GENH/aisc_server_extern.h
.../MAKEBIN/aisc AISC/aisc_global.pa PT.aisc GENC/aisc_global.c GENH/aisc_server_extern.aisc GENH/import_proto.h
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_global.o GENC/aisc_global.c -IGENH -I. -IC -DAISC_SAVE_NO
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o GENC/aisc_server.o GENC/aisc_server.c -IGENH -I. -IC -DAISC_SAVE_NO
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_COM -I/Â«PKGBUILDDIRÂ»/INCLUDE -fno-strict-aliasing -Wno-unused -c -o PT_extern.o PT_extern.c -IGENH -I. -IC -DAISC_SAVE_NO
ld -rpath=/usr/lib/arb/lib -r -o server.a O/server.o O/struct_man.o O/aisc_extern.o GENC/aisc_global.o GENC/aisc_server.o PT_extern.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»'
/usr/bin/make arb
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»'
(cd lib;/usr/bin/make all)
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»/lib'
test -e arb_tcp.dat || cp -p arb_tcp_org.dat arb_tcp.dat
test -L nas && echo "lib/nas is a link - skipped" || \
		(cd nas;/usr/bin/make all)
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/lib/nas'
rm -f names.dat
cp names.dat.template names.dat
rm -f *%
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/lib/nas'
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»/lib'
/usr/bin/make arbbasic2
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»'
-------------------------------------------------------------------------------- Make everything in TEMPLATES
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/TEMPLATES'
.../SOURCE_TOOLS/build_info.pl 
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/TEMPLATES'
-------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/AISC_MKPTPS'
make[5]: Nothing to be done for `dummy.a'.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/AISC_MKPTPS'
-------------------------------------------------------------------------------- Make everything in AISC
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/AISC'
make[5]: Nothing to be done for `dummy.a'.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/AISC'
-------------------------------------------------------------------------------- Make everything in NAMES_COM
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
make[5]: `server.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
-------------------------------------------------------------------------------- Make everything in PROBE_COM
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
make[5]: `server.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
-------------------------------------------------------------------------------- Make everything in NAMES_COM
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
make[5]: `server.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
/usr/bin/make SL/SL.dummy
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»'
-------------------------------------------------------------------------------- Make everything in SL
make[6]: Entering directory `/Â«PKGBUILDDIRÂ»/SL'
make[7]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/TREE_READ'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_TREE_READ -c TreeRead.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_TREE_READ -c TreeTools.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o TREE_READ.a  TreeRead.o TreeTools.o
make[7]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/TREE_READ'
make[7]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/TREE_WRITE'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_TREE_WRITE -c TreeWrite.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o TREE_WRITE.a  TreeWrite.o
make[7]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/TREE_WRITE'
make[7]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/HELIX'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_HELIX -c BI_helix.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o HELIX.a  BI_helix.o
make[7]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/HELIX'
make[7]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/AW_HELIX'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_AW_HELIX -c AW_helix.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o AW_HELIX.a  AW_helix.o
make[7]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/AW_HELIX'
make[7]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/AW_NAME'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_AW_NAME -c AW_rename.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_AW_NAME -c AW_names_admin.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o AW_NAME.a  AW_rename.o AW_names_admin.o 
make[7]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/AW_NAME'
make[7]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/DB_SCANNER'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_DB_SCANNER -c db_scanner.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o DB_SCANNER.a  db_scanner.o 
make[7]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/DB_SCANNER'
make[7]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/FILE_BUFFER'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_FILE_BUFFER -c FileBuffer.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o FILE_BUFFER.a  FileBuffer.o 
make[7]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/FILE_BUFFER'
make[7]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/REGEXPR'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_REGEXPR -c RegExpr.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o REGEXPR.a  RegExpr.o
make[7]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/REGEXPR'
make[7]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/FAST_ALIGNER'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_FAST_ALIGNER -c ClustalV.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SL -DIN_ARB_FAST_ALIGNER -c fast_aligner.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
fast_aligner.cxx: In function 'const char* alignCompactedTo(AWTC_CompactedSubSequence*, const AWTC_FastSearchSequence*, int, GB_CSTR, long int, GBDATA*, GBDATA*, const AlignParams&)':
fast_aligner.cxx:1254:31: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
fast_aligner.cxx:1254:84: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
ld -rpath=/usr/lib/arb/lib -r -o FAST_ALIGNER.a  ClustalV.o fast_aligner.o
make[7]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/FAST_ALIGNER'
make[6]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL'
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»'
-------------------------------------------------------------------------------- Make everything in GL
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GL'
make[6]: Entering directory `/Â«PKGBUILDDIRÂ»/GL/glpng'
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GL -DIN_ARB_glpng -c glpng.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
glpng.c: In function 'DefaultAlphaCallback':
glpng.c:51:57: warning: parameter 'red' set but not used [-Wunused-but-set-parameter]
ld -rpath=/usr/lib/arb/lib -r -o libglpng_arb.a glpng.o
make[6]: Leaving directory `/Â«PKGBUILDDIRÂ»/GL/glpng'
make[6]: Entering directory `/Â«PKGBUILDDIRÂ»/GL/glAW'
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GL -DIN_ARB_glAW -c GLwMDrawA.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GL -DIN_ARB_glAW -c AW_window_ogl.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include -I/Â«PKGBUILDDIRÂ»/WINDOW 
ld -rpath=/usr/lib/arb/lib -r -o libglAW.a GLwMDrawA.o AW_window_ogl.o
make[6]: Leaving directory `/Â«PKGBUILDDIRÂ»/GL/glAW'
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GL'
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»'
/usr/bin/make arbshared arbapplications help
make[4]: Entering directory `/Â«PKGBUILDDIRÂ»'
-------------------------------------------------------------------------------- Make everything in ARBDB
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDB'
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adsort.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adlang1.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adstring.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admatch.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
admatch.c: In function 'GBS_string_eval':
admatch.c:763:37: warning: ignoring return value of 'gbs_build_replace_string', declared with attribute warn_unused_result [-Wunused-result]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c arbdb.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
arbdb.c: In function 'GB_copy_with_protection':
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c: In function 'gb_remove_callback':
arbdb.c:2239:13: warning: variable 'removed' set but not used [-Wunused-but-set-variable]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_core.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
ad_core.c: In function 'ad_use':
ad_core.c:11:17: warning: parameter 'dummy' set but not used [-Wunused-but-set-parameter]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admath.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adoptimize.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adsystem.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adsystem.c: In function 'gb_load_single_key_data':
adsystem.c:141:101: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
adsystem.c:159:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
adsystem.c:160:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adindex.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adperl.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adlink.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adsocket.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adcomm.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adcomm.c: In function 'gbcms_write_updated':
adcomm.c:303:23: warning: variable 'hs' set but not used [-Wunused-but-set-variable]
adcomm.c: In function 'gbcms_talking_init_transaction':
adcomm.c:533:14: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
adcomm.c: In function 'gbcm_read_bin':
adcomm.c:1231:27: warning: variable 'flags3' set but not used [-Wunused-but-set-variable]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adhash.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adquery.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adquery.c: In function 'gb_search':
adquery.c:449:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
adquery.c:455:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
adquery.c:526:31: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
adquery.c: In function 'GB_command_interpreter':
adquery.c:861:19: warning: variable 'len' set but not used [-Wunused-but-set-variable]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_save_load.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
ad_save_load.c: In function 'gb_write_bin_rek':
ad_save_load.c:799:13: warning: null argument where non-null required (argument 1) [-Wnonnull]
ad_save_load.c: In function 'GB_save_as':
ad_save_load.c:1079:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c: In function 'GB_save_quick_as':
ad_save_load.c:1126:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1148:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1173:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1184:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c: In function 'GB_save_quick':
ad_save_load.c:1213:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1234:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1267:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c: In function 'gb_check_saveable':
ad_save_load.c:1307:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1312:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adcompr.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admalloc.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_load.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
ad_load.c: In function 'GB_login':
ad_load.c:1380:34: warning: ignoring return value of 'gb_scan_directory', declared with attribute warn_unused_result [-Wunused-result]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c admap.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
admap.c: In function 'gb_save_mapfile':
admap.c:636:9: warning: variable 'writeOffset' set but not used [-Wunused-but-set-variable]
admap.c:635:10: warning: variable 'calcOffset' set but not used [-Wunused-but-set-variable]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adTest.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adTest.c: In function 'testData':
adTest.c:36:9: warning: variable 'err' set but not used [-Wunused-but-set-variable]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtune.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adGene.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtcp.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adhashtools.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adExperiment.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtools.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adseqcompr.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtables.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adRevCompl.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adChangeKey.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adali.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adali.c: In function 'GBT_create_sequence_data':
adali.c:597:5: warning: 'GBT_add_data' is deprecated (declared at adali.c:568) [-Wdeprecated-declarations]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adcolumns.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adtree.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c adname.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c aditem.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c arbdbpp.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB -c ad_config.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib    -shared -o libARBDB.so adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o
touch libARBDB.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDB'
-------------------------------------------------------------------------------- Make everything in ARBDBS
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDBS'
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adsort.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adlang1.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adstring.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admatch.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
admatch.c: In function 'GBS_string_eval':
admatch.c:763:37: warning: ignoring return value of 'gbs_build_replace_string', declared with attribute warn_unused_result [-Wunused-result]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c arbdb.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
arbdb.c: In function 'GB_copy_with_protection':
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c: In function 'gb_remove_callback':
arbdb.c:2239:13: warning: variable 'removed' set but not used [-Wunused-but-set-variable]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_core.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
ad_core.c: In function 'ad_use':
ad_core.c:11:17: warning: parameter 'dummy' set but not used [-Wunused-but-set-parameter]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admath.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adoptimize.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adsystem.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adsystem.c: In function 'gb_load_single_key_data':
adsystem.c:141:101: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
adsystem.c:159:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
adsystem.c:160:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adindex.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adperl.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adlink.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adsocket.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adcomm.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adcomm.c: In function 'gbcms_write_updated':
adcomm.c:303:23: warning: variable 'hs' set but not used [-Wunused-but-set-variable]
adcomm.c: In function 'gbcms_talking_init_transaction':
adcomm.c:533:14: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
adcomm.c: In function 'gbcm_read_bin':
adcomm.c:1231:27: warning: variable 'flags3' set but not used [-Wunused-but-set-variable]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adhash.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adquery.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adquery.c: In function 'gb_search':
adquery.c:449:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
adquery.c:455:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
adquery.c:526:31: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
adquery.c: In function 'GB_command_interpreter':
adquery.c:861:19: warning: variable 'len' set but not used [-Wunused-but-set-variable]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_save_load.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
ad_save_load.c: In function 'gb_write_bin_rek':
ad_save_load.c:799:13: warning: null argument where non-null required (argument 1) [-Wnonnull]
ad_save_load.c: In function 'GB_save_as':
ad_save_load.c:1079:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c: In function 'GB_save_quick_as':
ad_save_load.c:1126:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1148:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1173:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1184:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c: In function 'GB_save_quick':
ad_save_load.c:1213:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1234:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1267:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c: In function 'gb_check_saveable':
ad_save_load.c:1307:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1312:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adcompr.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admalloc.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_load.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
ad_load.c: In function 'GB_login':
ad_load.c:1380:34: warning: ignoring return value of 'gb_scan_directory', declared with attribute warn_unused_result [-Wunused-result]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c admap.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
admap.c: In function 'gb_save_mapfile':
admap.c:636:9: warning: variable 'writeOffset' set but not used [-Wunused-but-set-variable]
admap.c:635:10: warning: variable 'calcOffset' set but not used [-Wunused-but-set-variable]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adTest.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adTest.c: In function 'testData':
adTest.c:36:9: warning: variable 'err' set but not used [-Wunused-but-set-variable]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtune.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adGene.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtcp.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adhashtools.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adExperiment.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtools.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adseqcompr.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtables.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adRevCompl.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adChangeKey.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adali.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adali.c: In function 'GBT_create_sequence_data':
adali.c:597:5: warning: 'GBT_add_data' is deprecated (declared at adali.c:568) [-Wdeprecated-declarations]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adcolumns.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adtree.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c adname.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c aditem.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c arbdbpp.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBS -c ad_config.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
ld -rpath=/usr/lib/arb/lib -r -o libARBDB.a adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o arbdbpp.o ad_config.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDBS'
-------------------------------------------------------------------------------- Make everything in ARBDB2
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDB2'
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adsort.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adlang1.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adstring.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admatch.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
admatch.c: In function 'GBS_string_eval':
admatch.c:763:37: warning: ignoring return value of 'gbs_build_replace_string', declared with attribute warn_unused_result [-Wunused-result]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c arbdb.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
arbdb.c: In function 'GB_copy_with_protection':
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c:1469:13: warning: null argument where non-null required (argument 2) [-Wnonnull]
arbdb.c: In function 'gb_remove_callback':
arbdb.c:2239:13: warning: variable 'removed' set but not used [-Wunused-but-set-variable]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_core.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
ad_core.c: In function 'ad_use':
ad_core.c:11:17: warning: parameter 'dummy' set but not used [-Wunused-but-set-parameter]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admath.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adoptimize.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adsystem.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adsystem.c: In function 'gb_load_single_key_data':
adsystem.c:141:101: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
adsystem.c:159:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
adsystem.c:160:123: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adindex.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adperl.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adlink.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adsocket.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adcomm.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adcomm.c: In function 'gbcms_write_updated':
adcomm.c:303:23: warning: variable 'hs' set but not used [-Wunused-but-set-variable]
adcomm.c: In function 'gbcms_talking_init_transaction':
adcomm.c:533:14: warning: variable 'buffer' set but not used [-Wunused-but-set-variable]
adcomm.c: In function 'gbcm_read_bin':
adcomm.c:1231:27: warning: variable 'flags3' set but not used [-Wunused-but-set-variable]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adhash.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adquery.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adquery.c: In function 'gb_search':
adquery.c:449:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
adquery.c:455:28: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
adquery.c:526:31: warning: comparison between 'GB_TYPES' and 'enum gb_search_enum' [-Wenum-compare]
adquery.c: In function 'GB_command_interpreter':
adquery.c:861:19: warning: variable 'len' set but not used [-Wunused-but-set-variable]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_save_load.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
ad_save_load.c: In function 'gb_write_bin_rek':
ad_save_load.c:799:13: warning: null argument where non-null required (argument 1) [-Wnonnull]
ad_save_load.c: In function 'GB_save_as':
ad_save_load.c:1079:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c: In function 'GB_save_quick_as':
ad_save_load.c:1126:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1148:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1173:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1184:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c: In function 'GB_save_quick':
ad_save_load.c:1213:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1234:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1267:5: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c: In function 'gb_check_saveable':
ad_save_load.c:1307:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
ad_save_load.c:1312:9: warning: 'GB_get_error' is deprecated (declared at ./ad_prot.h:43) [-Wdeprecated-declarations]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adcompr.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admalloc.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_load.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
ad_load.c: In function 'GB_login':
ad_load.c:1380:34: warning: ignoring return value of 'gb_scan_directory', declared with attribute warn_unused_result [-Wunused-result]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c admap.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
admap.c: In function 'gb_save_mapfile':
admap.c:636:9: warning: variable 'writeOffset' set but not used [-Wunused-but-set-variable]
admap.c:635:10: warning: variable 'calcOffset' set but not used [-Wunused-but-set-variable]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adTest.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adTest.c: In function 'testData':
adTest.c:36:9: warning: variable 'err' set but not used [-Wunused-but-set-variable]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtune.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adGene.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtcp.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adhashtools.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adExperiment.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtools.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adseqcompr.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtables.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adRevCompl.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adChangeKey.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adali.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
adali.c: In function 'GBT_create_sequence_data':
adali.c:597:5: warning: 'GBT_add_data' is deprecated (declared at adali.c:568) [-Wdeprecated-declarations]
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adcolumns.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adtree.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c adname.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c aditem.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
gcc  -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDB2 -c ad_config.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib    -shared -o libARBDB.so adsort.o adlang1.o adstring.o admatch.o arbdb.o ad_core.o admath.o adoptimize.o adsystem.o adindex.o adperl.o adlink.o adsocket.o adcomm.o adhash.o adquery.o ad_save_load.o adcompr.o admalloc.o ad_load.o admap.o adTest.o adtune.o adGene.o adtcp.o adhashtools.o adExperiment.o adtools.o adseqcompr.o adtables.o adRevCompl.o adChangeKey.o adali.o adcolumns.o adtree.o adname.o aditem.o ad_config.o
touch libARBDB.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDB2'
-------------------------------------------------------------------------------- Make everything in ARBDBPP
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDBPP'
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adtsequence.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adt_edit.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
adt_edit.cxx: In member function 'AD_ERR* ADT_SEQUENCE::show_edit_search(ADT_SEARCH*, ADT_EDIT*)':
adt_edit.cxx:581:13: warning: variable 'seq_empty_var' set but not used [-Wunused-but-set-variable]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adtali.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adextended.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adseq.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
adseq.cxx: In member function 'AD_ERR* AD_CONT::create(AD_SPECIES*, AD_ALI*)':
adseq.cxx:1012:20: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
adseq.cxx:1012:84: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adspecies.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c admain.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c adali.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARBDBPP -c liste.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib    -shared -o libARBDBPP.so adtsequence.o adt_edit.o adtali.o adextended.o adseq.o adspecies.o admain.o adali.o  liste.o
touch libARBDBPP.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDBPP'
-------------------------------------------------------------------------------- Make everything in WINDOW
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/WINDOW'
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_position.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_Xm.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_at.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_button.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AW_button.cxx: In function 'void AW_variable_update_callback(Widget, XtPointer, XtPointer)':
AW_button.cxx:199:37: warning: variable 'found' set but not used [-Wunused-but-set-variable]
AW_button.cxx: In member function 'int AW_window::get_index_of_element(AW_selection_list*, const char*)':
AW_button.cxx:1617:17: warning: variable 'found_index' set but not used [-Wunused-but-set-variable]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_click.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_debug.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_device.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AW_device.cxx: In member function 'int AW_device::text_overlay(int, const char*, long int, AW_pos, AW_pos, AW_pos, AW_bitset, AW_CL, AW_CL, AW_CL, AW_pos, AW_pos, int (*)(AW_device*, int, const char*, size_t, size_t, size_t, AW_pos, AW_pos, AW_pos, AW_pos, AW_CL, AW_CL, AW_CL))':
AW_device.cxx:721:22: warning: variable 'yi' set but not used [-Wunused-but-set-variable]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_font_group.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_global_awars.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_nawar.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AW_nawar.cxx: In member function 'AW_awar* AW_root::awar_pointer(const char*, void*, AW_default)':
AW_nawar.cxx:193:111: warning: passing NULL to non-pointer argument 4 of 'AW_awar::AW_awar(AW_VARIABLE_TYPE, const char*, const char*, double, AW_default, AW_root*)' [-Wconversion-null]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_preset.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AW_preset.cxx: In function 'void* AW_manage_GC(AW_window*, AW_device*, int, int, AW_GCM_AREA, void (*)(AW_window*, AW_CL, AW_CL), AW_CL, AW_CL, bool, const char*, ...)':
AW_preset.cxx:613:18: warning: variable 'flag_no_color_selector' set but not used [-Wunused-but-set-variable]
AW_preset.cxx:614:18: warning: variable 'flag_append_in_same_line' set but not used [-Wunused-but-set-variable]
AW_preset.cxx: In function 'bool aw_insert_gcs(AW_root*, AW_window_simple*, aw_gc_manager*, bool)':
AW_preset.cxx:786:17: warning: variable 'first' set but not used [-Wunused-but-set-variable]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_print.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_question.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_size.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_status.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AW_status.cxx: In function 'int aw_status_read_int(int, int)':
AW_status.cxx:281:19: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_window.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AW_window.cxx: In member function 'void AW_window::insert_separator()':
AW_window.cxx:3002:12: warning: variable 'separator' set but not used [-Wunused-but-set-variable]
AW_window.cxx: In member function 'void AW_window::insert_separator_help()':
AW_window.cxx:3011:12: warning: variable 'separator' set but not used [-Wunused-but-set-variable]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xfig.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xfigfont.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xfont.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_xkey.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WINDOW -c AW_window_Xm_interface.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib    -shared -o libAW.so AW_position.o AW_Xm.o AW_at.o AW_button.o AW_click.o AW_debug.o AW_device.o AW_font_group.o AW_global_awars.o AW_nawar.o AW_preset.o AW_print.o AW_question.o AW_size.o AW_status.o AW_window.o AW_xfig.o AW_xfigfont.o AW_xfont.o AW_xkey.o AW_window_Xm_interface.o 
touch libAW.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/WINDOW'
-------------------------------------------------------------------------------- Make everything in AWT
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/AWT'
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_input_mask.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AWT_input_mask.cxx: In function 'void create_new_mask_cb(AW_window*)':
AWT_input_mask.cxx:2242:18: warning: variable 'closeWindow' set but not used [-Wunused-but-set-variable]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_hotkeys.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_www.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tables.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AWT_tables.cxx: In function 'void ad_table_field_reorder_cb(AW_window*, awt_table*)':
AWT_tables.cxx:25:14: warning: variable 'warning' set but not used [-Wunused-but-set-variable]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_irstree.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_asciiprint.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_map_key.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tree_cmp.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_colors.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_pro_a_nucs.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_csp.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_canvas.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_dtree.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tree.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_tree_cb.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_nei.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_filter.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_sel_boxes.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_canio.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_nds.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_query_and_functions.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_file_selection.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_preset.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_dna.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_protein.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_seq_simple_pro.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_codon_table.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AWT_codon_table.cxx: In function 'bool AWT_is_codon(char, const char*, const AWT_allowedCode&, AWT_allowedCode&, const char**)':
AWT_codon_table.cxx:518:18: warning: variable 'correct_disallowed_translation' set but not used [-Wunused-but-set-variable]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_iupac.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_config_manager.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AWT_config_manager.cxx: In function 'void AWT_start_config_manager(AW_window*, AW_CL)':
AWT_config_manager.cxx:119:24: warning: variable 'reopen' set but not used [-Wunused-but-set-variable]
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_advice.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_db_browser.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_attributes.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_changekey.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_item_sel_list.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_macro.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++    -fPIC -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWT -c AWT_translate.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib    -shared -o libAWT.so AWT_input_mask.o AWT_hotkeys.o AWT_www.o AWT_tables.o AWT_irstree.o AWT_asciiprint.o AWT_map_key.o AWT_tree_cmp.o AWT_seq_colors.o AWT_pro_a_nucs.o AWT_csp.o AWT_canvas.o AWT_dtree.o AWT_tree.o AWT_tree_cb.o AWT_nei.o AWT_filter.o AWT_sel_boxes.o AWT_canio.o AWT_nds.o AWT_query_and_functions.o AWT_file_selection.o AWT_preset.o AWT_seq_dna.o AWT_seq_protein.o AWT_seq_simple_pro.o AWT_codon_table.o AWT_iupac.o AWT_config_manager.o AWT_advice.o AWT_db_browser.o AWT_attributes.o AWT_changekey.o AWT_item_sel_list.o AWT_macro.o AWT_translate.o
touch libAWT.a
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/AWT'
/usr/bin/make -C bin all
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/bin'
find . -type l -exec rm {} \;
ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` .
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/bin'
-------------------------------------------------------------------------------- Make everything in GDEHELP
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GDEHELP'
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/align.menu > MENUS/align.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/desoete.menu > MENUS/desoete.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/dnamlrates.menu > MENUS/dnamlrates.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/export.menu > MENUS/export.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/fastdnaml.menu > MENUS/fastdnaml.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/import.menu > MENUS/import.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/inc_fastdnaml.menu > MENUS/inc_fastdnaml.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/phylip_dist.menu > MENUS/phylip_dist.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/phylip_dist_org.menu > MENUS/phylip_dist_org.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/phylip_help.menu > MENUS/phylip_help.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/phylip_ml.menu > MENUS/phylip_ml.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/phylip_pars.menu > MENUS/phylip_pars.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/pretty_print.menu > MENUS/pretty_print.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/puzzle.menu > MENUS/puzzle.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/raxml.menu > MENUS/raxml.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/start_arb.menu > MENUS/start_arb.genmenu
( cat genmenu.header; sed -e "s/^[ ]*//" ) < MENUS/warning.menu > MENUS/warning.genmenu
chmod a+w ARB_GDEmenus
chmod: cannot access `ARB_GDEmenus': No such file or directory
make[5]: [ARB_GDEmenus] Error 1 (ignored)
cpp  -IMENUS ARB_GDEmenus.source >ARB_GDEmenus
chmod a-w ARB_GDEmenus
grep -i '^itemhelp:' < ARB_GDEmenus | sed -e 's/^itemhelp://' | sort | uniq > helpfiles.lst
make[6]: Entering directory `/Â«PKGBUILDDIRÂ»/GDEHELP'
----------------------------------------------------------------
Collecting documentation for external programs used in GDE menus
lynx -dump -nolist -display_charset=iso-8859-1 ../GDE/PHYLIP/doc/proml.html | sed -e 's/©/(C)/' > HELP_DOC_GEN/proml.doc
test -s HELP_DOC_GEN/proml.doc || (echo HELP_DOC_GEN/proml.doc not generated or empty && rm HELP_DOC_GEN/proml.doc && false)
lynx -dump -nolist -display_charset=iso-8859-1 ../GDE/PHYLIP/doc/dnapars.html | sed -e 's/©/(C)/' > HELP_DOC_GEN/dnapars.doc
test -s HELP_DOC_GEN/dnapars.doc || (echo HELP_DOC_GEN/dnapars.doc not generated or empty && rm HELP_DOC_GEN/dnapars.doc && false)
lynx -dump -nolist -display_charset=iso-8859-1 ../GDE/PHYLIP/doc/protpars.html | sed -e 's/©/(C)/' > HELP_DOC_GEN/protpars.doc
test -s HELP_DOC_GEN/protpars.doc || (echo HELP_DOC_GEN/protpars.doc not generated or empty && rm HELP_DOC_GEN/protpars.doc && false)
lynx -dump -nolist -display_charset=iso-8859-1 ../GDE/PHYML/usersguide_phyliplike.html | sed -e 's/©/(C)/' > HELP_DOC_GEN/phyml.doc
test -s HELP_DOC_GEN/phyml.doc || (echo HELP_DOC_GEN/phyml.doc not generated or empty && rm HELP_DOC_GEN/phyml.doc && false)
make[6]: Leaving directory `/Â«PKGBUILDDIRÂ»/GDEHELP'
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GDEHELP'
-------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/AISC_MKPTPS'
make[5]: Nothing to be done for `dummy.a'.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/AISC_MKPTPS'
-------------------------------------------------------------------------------- Make everything in AISC
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/AISC'
make[5]: Nothing to be done for `dummy.a'.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/AISC'
-------------------------------------------------------------------------------- Make everything in PROBE_COM
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
make[5]: `server.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
-------------------------------------------------------------------------------- Building prototyper
/usr/bin/make AISC_MKPTPS/AISC_MKPTPS.dummy
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»'
-------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
make[6]: Entering directory `/Â«PKGBUILDDIRÂ»/AISC_MKPTPS'
make[6]: Nothing to be done for `AISC_MKPTPS.a'.
make[6]: Leaving directory `/Â«PKGBUILDDIRÂ»/AISC_MKPTPS'
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»'
-------------------------------------------------------------------------------- Make everything in ARB_GDE
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/ARB_GDE'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_ParseMenu.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_event.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
GDE_event.cxx: In function 'void GDE_export(NA_Alignment*, char*, long int)':
GDE_event.cxx:305:39: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
GDE_event.cxx:305:89: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
GDE_event.cxx:369:43: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
GDE_event.cxx:369:92: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
GDE_event.cxx:428:36: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
GDE_event.cxx:428:88: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_arbdb_io.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_HGLfile.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
GDE_HGLfile.cxx: In function 'void StripSpecial(char*)':
GDE_HGLfile.cxx:69:9: warning: variable 'i' set but not used [-Wunused-but-set-variable]
GDE_HGLfile.cxx: In function 'void ReadGDE(char*, NA_Alignment*, int)':
GDE_HGLfile.cxx:199:26: warning: variable 'count' set but not used [-Wunused-but-set-variable]
GDE_HGLfile.cxx:200:35: warning: variable 'c' set but not used [-Wunused-but-set-variable]
GDE_HGLfile.cxx:203:18: warning: variable 'genclen' set but not used [-Wunused-but-set-variable]
GDE_HGLfile.cxx:195:6: warning: parameter 'type' set but not used [-Wunused-but-set-parameter]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_Genbank.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
GDE_Genbank.cxx: In function 'void ReadGen(char*, NA_Alignment*, int)':
GDE_Genbank.cxx:94:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
GDE_Genbank.cxx:89:6: warning: parameter 'type' set but not used [-Wunused-but-set-parameter]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ARB_GDE -c GDE_FileIO.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
GDE_FileIO.cxx: In function 'void ReadNA_Flat(char*, char*, int)':
GDE_FileIO.cxx:125:9: warning: variable 'i' set but not used [-Wunused-but-set-variable]
GDE_FileIO.cxx:125:16: warning: variable 'c' set but not used [-Wunused-but-set-variable]
GDE_FileIO.cxx:128:10: warning: variable 'curname' set but not used [-Wunused-but-set-variable]
GDE_FileIO.cxx:122:13: warning: parameter 'type' set but not used [-Wunused-but-set-parameter]
GDE_FileIO.cxx: In function 'void AppendNA(NA_Base*, int, NA_Sequence*)':
GDE_FileIO.cxx:422:14: warning: variable 'temp' set but not used [-Wunused-but-set-variable]
GDE_FileIO.cxx: In function 'void ReadCMask(const char*)':
GDE_FileIO.cxx:710:24: warning: variable 'orig_ctype' set but not used [-Wunused-but-set-variable]
GDE_FileIO.cxx: In function 'int WriteStatus(NA_Alignment*, char*, int)':
GDE_FileIO.cxx:860:5: warning: parameter 'method' set but not used [-Wunused-but-set-parameter]
GDE_FileIO.cxx: In function 'void ReadStatus(char*)':
GDE_FileIO.cxx:927:6: warning: parameter 'filename' set but not used [-Wunused-but-set-parameter]
GDE_FileIO.cxx: In function 'void NormalizeOffset(NA_Alignment*)':
GDE_FileIO.cxx:962:9: warning: variable 'i' set but not used [-Wunused-but-set-variable]
ld -rpath=/usr/lib/arb/lib -r -o ARB_GDE.a GDE_ParseMenu.o GDE.o GDE_event.o GDE_arbdb_io.o  GDE_HGLfile.o GDE_Genbank.o GDE_FileIO.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARB_GDE'
-------------------------------------------------------------------------------- Make everything in NAMES_COM
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
make[5]: `server.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
-------------------------------------------------------------------------------- Make everything in PROBE_COM
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
make[5]: `server.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_COM'
-------------------------------------------------------------------------------- Make everything in AWTC
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/AWTC'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWTC -c AWTC_constructSequence.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AWTC_constructSequence.cxx: In function 'char* AWTC_constructSequence(int, const char**, int, char**)':
AWTC_constructSequence.cxx:507:11: warning: unused variable 'resultSeq' [-Wunused-variable]
AWTC_constructSequence.cxx:509:9: warning: unused variable 'off' [-Wunused-variable]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWTC -c AWTC_next_neighbours.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWTC -c AWTC_seq_search.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWTC -c AWTC_submission.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o AWTC.a AWTC_constructSequence.o AWTC_next_neighbours.o AWTC_seq_search.o AWTC_submission.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/AWTC'
-------------------------------------------------------------------------------- Make everything in AWTI
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/AWTI'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWTI -c AWTI_import.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_AWTI -c AWTI_export.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o AWTI.a AWTI_import.o AWTI_export.o 
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/AWTI'
-------------------------------------------------------------------------------- Make everything in GENOM
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GENOM'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_interface.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_map.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
GEN_map.cxx: In function 'void gen_extract_gene_2_pseudoSpecies(GBDATA*, GBDATA*, EG2PS_data*)':
GEN_map.cxx:882:39: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
GEN_map.cxx:882:93: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_graphic.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
GEN_graphic.cxx:158:12: warning: unused parameter 'selected_range' [-Wunused-parameter]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_gene.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_nds.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
GEN_nds.cxx:307:2: warning: #warning make this function more general like AWT_popup_select_species_field_window [-Wcpp]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_color_groups.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c GEN_translations.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c EXP_interface.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM -c EXP_main.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o GENOM.a GEN_interface.o GEN_map.o GEN_graphic.o GEN_gene.o GEN_nds.o GEN_color_groups.o GEN_translations.o EXP_interface.o EXP_main.o 
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GENOM'
-------------------------------------------------------------------------------- Make everything in GENOM_IMPORT
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/GENOM_IMPORT'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c GenomeImport.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c Importer.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c DBwriter.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
DBwriter.cxx: In member function 'void DBwriter::writeSequence(const SequenceBuffer&)':
DBwriter.cxx:226:23: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
DBwriter.cxx:226:76: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c SequenceBuffer.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
SequenceBuffer.cxx: In member function 'void BaseCounter::checkOverallCounter() const':
SequenceBuffer.cxx:55:67: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat]
SequenceBuffer.cxx:55:67: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'size_t {aka long unsigned int}' [-Wformat]
SequenceBuffer.cxx: In member function 'void BaseCounter::expectEqual(const BaseCounter&) const':
SequenceBuffer.cxx:116:114: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'size_t {aka long unsigned int}' [-Wformat]
SequenceBuffer.cxx:116:114: warning: format '%u' expects argument of type 'unsigned int', but argument 3 has type 'size_t {aka long unsigned int}' [-Wformat]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c MetaInfo.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c Feature.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c Location.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_GENOM_IMPORT -c tools.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
-------------------- Checking GENOM_IMPORT.a
Target 'GENOM_IMPORT.a' not found
-> rebuilding GENOM_IMPORT.a (Wed Dec 31 17:59:59 1969)
ld -rpath=/usr/lib/arb/lib -r -o GENOM_IMPORT.a GenomeImport.o Importer.o DBwriter.o SequenceBuffer.o MetaInfo.o Feature.o Location.o tools.o 
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/GENOM_IMPORT'
-------------------------------------------------------------------------------- Make everything in MERGE
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/MERGE'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_checkfield.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_main.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_trees.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_alignment.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_species.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_extendeds.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_names.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_gene_species.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_configs.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MERGE -c MG_preserves.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o MERGE.a MG_checkfield.o MG_main.o MG_trees.o MG_alignment.o MG_species.o MG_extendeds.o MG_names.o MG_gene_species.o MG_configs.o MG_preserves.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/MERGE'
-------------------------------------------------------------------------------- Make everything in MULTI_PROBE
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/MULTI_PROBE'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_main.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_Window.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_noclass.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_sonde.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_sondentopf.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
MP_sondentopf.cxx: In member function 'Sonde* ST_Container::cache_Sonde(char*, int, double)':
MP_sondentopf.cxx:67:13: warning: variable 'hashreturnval' set but not used [-Wunused-but-set-variable]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_mo_liste.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
MP_mo_liste.cxx: In member function 'long int MO_Liste::put_entry(const char*)':
MP_mo_liste.cxx:184:13: warning: variable 'hashreturnval' set but not used [-Wunused-but-set-variable]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_probe.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
MP_probe.cxx: In member function 'void ProbeValuation::init_valuation()':
MP_probe.cxx:178:22: warning: variable 'stc' set but not used [-Wunused-but-set-variable]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_GenerationDuplicates.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_Generation.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_probe_combi_statistic.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_probe_tabs.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_MULTI_PROBE -c MP_permute.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o MULTI_PROBE.a MP_main.o MP_Window.o MP_noclass.o MP_sonde.o MP_sondentopf.o MP_mo_liste.o MP_probe.o MP_GenerationDuplicates.o MP_Generation.o MP_probe_combi_statistic.o MP_probe_tabs.o MP_permute.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/MULTI_PROBE'
-------------------------------------------------------------------------------- Make everything in NTREE
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/NTREE'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_consensus.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AP_consensus.cxx: In function 'const char* CON_export(char*, char*, int**, char*, int*, char*, int, long int, long int, int, int, int, double, double, int, int)':
AP_consensus.cxx:409:23: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_consensus.cxx:409:72: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_consensus.cxx:411:25: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_consensus.cxx:411:75: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_consensus.cxx:465:28: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_consensus.cxx:465:80: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_consensus.cxx: In function 'void CON_calc_max_freq_cb(AW_window*)':
AP_consensus.cxx:962:27: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_consensus.cxx:962:76: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_consensus.cxx:963:27: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_consensus.cxx:963:76: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_consensus.cxx:966:27: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_consensus.cxx:966:77: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_conservProfile2Gnuplot.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AP_conservProfile2Gnuplot.cxx: In function 'void AP_conservProfile2Gnuplot_callback(AW_window*)':
AP_conservProfile2Gnuplot.cxx:58:42: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_cprofile.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AP_cprofile.cxx: In function 'void CPRO_workupstatistic(unsigned char)':
AP_cprofile.cxx:234:17: warning: variable 'colmax' set but not used [-Wunused-but-set-variable]
AP_cprofile.cxx: In function 'void CPRO_memrequirement_cb(AW_root*)':
AP_cprofile.cxx:663:10: warning: variable 'versus' set but not used [-Wunused-but-set-variable]
AP_cprofile.cxx: In function 'void CPRO_condense_cb(AW_window*, AW_CL)':
AP_cprofile.cxx:1420:14: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_cprofile.cxx:1420:62: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_cprofile.cxx:1423:23: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
AP_cprofile.cxx:1423:72: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_csp_2_gnuplot.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
AP_csp_2_gnuplot.cxx: In function 'char* get_overlay_files(AW_root*, const char*, const char*&)':
AP_csp_2_gnuplot.cxx:92:50: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
AP_csp_2_gnuplot.cxx:92:63: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
AP_csp_2_gnuplot.cxx:100:55: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
AP_csp_2_gnuplot.cxx:100:68: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
AP_csp_2_gnuplot.cxx: In function 'void AP_csp_2_gnuplot_cb(AW_window*, AW_CL, AW_CL)':
AP_csp_2_gnuplot.cxx:388:62: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c AP_pos_var_pars.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_cb.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
NT_cb.cxx: In function 'void NT_system_cb2(AW_window*, AW_CL, AW_CL)':
NT_cb.cxx:128:35: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_concatenate.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
NT_concatenate.cxx: In function 'const char* displayAlignmentInfo(GBDATA*, GB_ERROR, char*, char*)':
NT_concatenate.cxx:310:37: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
NT_concatenate.cxx:310:93: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
NT_concatenate.cxx: In function 'void concatenateAlignments(AW_window*)':
NT_concatenate.cxx:415:39: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
NT_concatenate.cxx:415:95: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
NT_concatenate.cxx: In function 'GBDATA* concatenateFieldsCreateNewSpecies(AW_window*, GBDATA*, speciesConcatenateList)':
NT_concatenate.cxx:664:39: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
NT_concatenate.cxx:664:114: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_dbrepair.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_edconf.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_extern.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_import.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
NT_import.cxx: In function 'void NT_import_sequences(AW_window*, AW_CL, AW_CL)':
NT_import.cxx:52:30: warning: variable 'gb_merge_is_genom_db' set but not used [-Wunused-but-set-variable]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_ins_col.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_join.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_main.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_sort.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_trackAliChanges.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_validManual.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_validNameParser.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
NT_validNameParser.cxx: In function 'validNames::Desco validNames::determineType(const string&)':
NT_validNameParser.cxx:89:14: warning: variable 'isSee' set but not used [-Wunused-but-set-variable]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c NT_validNames.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_ali.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_ext.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_spec.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ad_spec.cxx: In function 'void ad_field_convert_commit_cb(AW_window*, AW_CL)':
ad_spec.cxx:729:29: warning: unused variable 'selector' [-Wunused-variable]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_transpro.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ad_transpro.cxx: In function 'const char* arb_r2a(GBDATA*, bool, bool, int, bool, const char*, const char*)':
ad_transpro.cxx:159:48: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
ad_transpro.cxx:159:100: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_NTREE -c ad_trees.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ad_trees.cxx: In function 'char* readXmlTree(char*)':
ad_trees.cxx:418:44: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result]
ad_trees.cxx:422:44: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result]
-------------------- Checking NTREE.a
Target 'NTREE.a' not found
-> rebuilding NTREE.a (Wed Dec 31 17:59:59 1969)
ld -rpath=/usr/lib/arb/lib -r -o NTREE.a AP_consensus.o AP_conservProfile2Gnuplot.o AP_cprofile.o AP_csp_2_gnuplot.o AP_pos_var_pars.o NT_cb.o NT_concatenate.o NT_dbrepair.o NT_edconf.o NT_extern.o NT_import.o NT_ins_col.o NT_join.o NT_main.o NT_sort.o NT_trackAliChanges.o NT_validManual.o NT_validNameParser.o NT_validNames.o ad_ali.o ad_ext.o ad_spec.o ad_transpro.o ad_trees.o 
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/NTREE'
-------------------------------------------------------------------------------- Make everything in PRIMER_DESIGN
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/PRIMER_DESIGN'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_Pair.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_Item.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_Node.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
PRD_Node.cxx: In member function 'void Node::print()':
PRD_Node.cxx:64:28: warning: array subscript is above array bounds [-Warray-bounds]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_Range.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_SequenceIterator.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_SearchFIFO.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c PRD_Design.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PRIMER_DESIGN -c primer_design.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o PRIMER_DESIGN.a PRD_Pair.o PRD_Item.o PRD_Node.o PRD_Range.o PRD_SequenceIterator.o PRD_SearchFIFO.o PRD_Design.o primer_design.o 
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/PRIMER_DESIGN'
-------------------------------------------------------------------------------- Make everything in PROBE_DESIGN
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_DESIGN'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_DESIGN -c -o probe_design.o probe_design.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
probe_design.cxx: In function 'const char* pd_get_the_gene_names(bytestring&, bytestring&)':
probe_design.cxx:293:21: warning: variable 'sequence' set but not used [-Wunused-but-set-variable]
probe_design.cxx: In function 'void pd_query_pt_server(AW_window*)':
probe_design.cxx:1769:35: warning: ignoring return value of 'const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)', declared with attribute warn_unused_result [-Wunused-result]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_DESIGN -c -o SaiProbeVisualization.o SaiProbeVisualization.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_DESIGN -c -o probe_match_parser.o probe_match_parser.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o PROBE_DESIGN.a probe_design.o SaiProbeVisualization.o probe_match_parser.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_DESIGN'
-------------------------------------------------------------------------------- Make everything in SEQ_QUALITY
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SEQ_QUALITY'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SEQ_QUALITY -c SQ_main.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SEQ_QUALITY -c SQ_functions.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
SQ_functions.cxx: In function 'const char* SQ_reset_quality_calcstate(GBDATA*)':
SQ_functions.cxx:82:21: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:82:34: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:92:29: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:92:42: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx: In function 'int SQ_get_value(GBDATA*, const char*)':
SQ_functions.cxx:131:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable]
SQ_functions.cxx: In function 'int SQ_get_value_no_tree(GBDATA*, const char*)':
SQ_functions.cxx:171:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable]
SQ_functions.cxx: In function 'const char* SQ_evaluate(GBDATA*, const SQ_weights&, bool)':
SQ_functions.cxx:239:21: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:239:34: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:216:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable]
SQ_functions.cxx: In function 'const char* SQ_pass1(SQ_GroupData*, GBDATA*, GBT_TREE*, AP_filter*)':
SQ_functions.cxx:450:17: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:450:30: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:461:25: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:461:38: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:469:25: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:469:38: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:439:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable]
SQ_functions.cxx: In function 'const char* SQ_pass1_no_tree(SQ_GroupData*, GBDATA*, AP_filter*)':
SQ_functions.cxx:554:21: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:554:34: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:564:29: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:564:42: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:572:29: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:572:42: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:534:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable]
SQ_functions.cxx: In function 'const char* SQ_pass2(const SQ_GroupData*, GBDATA*, GBT_TREE*, AP_filter*)':
SQ_functions.cxx:649:17: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:649:30: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:659:25: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:659:38: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:664:25: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:664:38: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:733:29: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:733:42: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:737:29: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:737:42: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:638:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable]
SQ_functions.cxx: In function 'const char* SQ_pass2_no_tree(const SQ_GroupData*, GBDATA*, AP_filter*)':
SQ_functions.cxx:889:21: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:889:34: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:898:29: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:898:42: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:903:29: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:903:42: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:972:33: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:972:46: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:976:33: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:976:46: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:871:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable]
SQ_functions.cxx: In function 'const char* SQ_count_nr_of_species(GBDATA*)':
SQ_functions.cxx:1120:21: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:1120:34: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:1130:29: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:1130:42: warning: 'const char* GB_get_error()' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_prot.h:43) [-Wdeprecated-declarations]
SQ_functions.cxx:1102:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable]
SQ_functions.cxx: In function 'const char* SQ_mark_species(GBDATA*, int, bool)':
SQ_functions.cxx:1239:13: warning: variable 'gb_species_data' set but not used [-Wunused-but-set-variable]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SEQ_QUALITY -c SQ_GroupData.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o SEQ_QUALITY.a SQ_main.o SQ_functions.o SQ_GroupData.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SEQ_QUALITY'
-------------------------------------------------------------------------------- Make everything in SERVERCNTRL
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SERVERCNTRL'
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_SERVERCNTRL -c servercntrl.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
ld -rpath=/usr/lib/arb/lib -r -o SERVERCNTRL.a servercntrl.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SERVERCNTRL'
-------------------------------------------------------------------------------- Make everything in SL/AW_NAME
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/AW_NAME'
make[5]: `AW_NAME.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/AW_NAME'
-------------------------------------------------------------------------------- Make everything in SL/DB_SCANNER
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/DB_SCANNER'
make[5]: `DB_SCANNER.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/DB_SCANNER'
-------------------------------------------------------------------------------- Make everything in SL/FILE_BUFFER
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/FILE_BUFFER'
make[5]: `FILE_BUFFER.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/FILE_BUFFER'
-------------------------------------------------------------------------------- Make everything in SL/HELIX
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/HELIX'
make[5]: `HELIX.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/HELIX'
-------------------------------------------------------------------------------- Make everything in SL/REGEXPR
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/REGEXPR'
make[5]: `REGEXPR.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/REGEXPR'
-------------------------------------------------------------------------------- Make everything in SL/TREE_READ
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/TREE_READ'
make[5]: `TREE_READ.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/TREE_READ'
-------------------------------------------------------------------------------- Make everything in SL/TREE_WRITE
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/TREE_WRITE'
make[5]: `TREE_WRITE.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/TREE_WRITE'
-------------------------------------------------------------------------------- Make everything in STAT
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/STAT'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_STAT -c ST_quality.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ST_quality.cxx: In function 'void st_ml_add_quality_string_to_species(GBDATA*, const char*, const char*, int, int, GB_HASH*, st_report_enum, const char*)':
ST_quality.cxx:168:33: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
ST_quality.cxx:168:94: warning: 'GBDATA* GBT_add_data(GBDATA*, const char*, const char*, GB_TYPES)' is deprecated (declared at /Â«PKGBUILDDIRÂ»/INCLUDE/ad_t_prot.h:108) [-Wdeprecated-declarations]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_STAT -c ST_ml.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ST_ml.cxx: In member function 'ST_ML_Color* ST_ML::get_color_string(char*, AP_tree*, int, int)':
ST_ml.cxx:820:9: warning: variable 'source_sequence_len' set but not used [-Wunused-but-set-variable]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_STAT -c ST_window.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o STAT.a ST_quality.o ST_ml.o ST_window.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/STAT'
-------------------------------------------------------------------------------- Make everything in XML
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/XML'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_XML -c xml.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
xml.cxx:40:15: warning: unused parameter 'quotedText' [-Wunused-parameter]
ld -rpath=/usr/lib/arb/lib -r -o XML.a xml.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/XML'
-------------------------------------------------------------------------------- Make everything in NAMES_COM
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
make[5]: `server.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
-------------------- Updating shared libraries
/usr/bin/make libs
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»'
cp LIBLINK/libARBDB.so lib/libARBDB.so
cp LIBLINK/libARBDBPP.so lib/libARBDBPP.so
cp LIBLINK/libARBDO.so lib/libARBDO.so
cp LIBLINK/libAW.so lib/libAW.so
cp LIBLINK/libAWT.so lib/libAWT.so
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»'
-------------------- Checking bin/arb_ntree
Target 'bin/arb_ntree' not found
-> rebuilding bin/arb_ntree (Wed Dec 31 17:59:59 1969)
Link bin/arb_ntree
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o bin/arb_ntree -L/Â«PKGBUILDDIRÂ»/LIBLINK PROBE_COM/client.a ARB_GDE/ARB_GDE.a AWTC/AWTC.a AWTI/AWTI.a GENOM/GENOM.a GENOM_IMPORT/GENOM_IMPORT.a MERGE/MERGE.a MULTI_PROBE/MULTI_PROBE.a NTREE/NTREE.a PRIMER_DESIGN/PRIMER_DESIGN.a PROBE_DESIGN/PROBE_DESIGN.a SEQ_QUALITY/SEQ_QUALITY.a SERVERCNTRL/SERVERCNTRL.a SL/AW_NAME/AW_NAME.a SL/DB_SCANNER/DB_SCANNER.a SL/FILE_BUFFER/FILE_BUFFER.a SL/HELIX/HELIX.a SL/REGEXPR/REGEXPR.a SL/TREE_READ/TREE_READ.a SL/TREE_WRITE/TREE_WRITE.a STAT/STAT.a XML/XML.a  -lARBDB  -lm -lAW -lAWT -L/usr/lib64 -lXm -lXpm -lXt -lXext -lX11
-------------------------------------------------------------------------------- Make everything in NAMES_COM
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
make[5]: `server.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/NAMES_COM'
-------------------------------------------------------------------------------- Make everything in PARSIMONY
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/PARSIMONY'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c PARS_main.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c PARS_dtree.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c PARS_debug.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c PARS_klprops.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c AP_buffer.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c AP_main.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c AP_tree_nlen.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PARSIMONY -c AP_tree_edge.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o PARSIMONY.a PARS_main.o PARS_dtree.o PARS_debug.o PARS_klprops.o AP_buffer.o AP_main.o AP_tree_nlen.o AP_tree_edge.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/PARSIMONY'
-------------------- Checking bin/arb_pars
Target 'bin/arb_pars' not found
-> rebuilding bin/arb_pars (Wed Dec 31 17:59:59 1969)
Link bin/arb_pars
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o bin/arb_pars -L/Â«PKGBUILDDIRÂ»/LIBLINK NAMES_COM/client.a SERVERCNTRL/SERVERCNTRL.a PARSIMONY/PARSIMONY.a SL/HELIX/HELIX.a SL/AW_NAME/AW_NAME.a XML/XML.a  -lARBDB  -lm -lAW -lAWT -L/usr/lib64 -lXm -lXpm -lXt -lXext -lX11
-------------------------------------------------------------------------------- Make everything in EDIT
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/EDIT'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT -c edit.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT -c edit_naligner.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT -c edit_tools.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_EDIT -c ed_conf.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o EDIT.a edit.o edit_naligner.o edit_tools.o ed_conf.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/EDIT'
-------------------------------------------------------------------------------- Make everything in SL/AW_HELIX
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/AW_HELIX'
make[5]: `AW_HELIX.a' is up to date.
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/AW_HELIX'
-------------------- Checking bin/arb_edit
Target 'bin/arb_edit' not found
-> rebuilding bin/arb_edit (Wed Dec 31 17:59:59 1969)
Link bin/arb_edit
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o bin/arb_edit -L/Â«PKGBUILDDIRÂ»/LIBLINK NAMES_COM/client.a SERVERCNTRL/SERVERCNTRL.a EDIT/EDIT.a ARB_GDE/ARB_GDE.a STAT/STAT.a XML/XML.a SL/HELIX/HELIX.a SL/AW_HELIX/AW_HELIX.a SL/AW_NAME/AW_NAME.a  -lARBDBPP -lARBDB  -lm -lAW -lAWT -L/usr/lib64 -lXm -lXpm -lXt -lXext -lX11
-------------------------------------------------------------------------------- Make everything in WETC
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/WETC'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_WETC -c -o WETC_main.o WETC_main.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o WETC.a WETC_main.o
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/WETC'
-------------------- Checking bin/arb_wetc
Target 'bin/arb_wetc' not found
-> rebuilding bin/arb_wetc (Wed Dec 31 17:59:59 1969)
Link bin/arb_wetc
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o bin/arb_wetc -L/Â«PKGBUILDDIRÂ»/LIBLINK WETC/WETC.a SL/HELIX/HELIX.a XML/XML.a  -lARBDB  -lm -lAW -lAWT -L/usr/lib64 -lXm -lXpm -lXt -lXext -lX11
-------------------------------------------------------------------------------- Make everything in HELP_SOURCE
make[5]: Entering directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE'
/usr/bin/make date.xsl.tmp
make[6]: Entering directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE'
cat date.xsl.header >date.xsl.tmp
bash -c "(export LC_ALL=C;date '+%d. %b %Y')" >>date.xsl.tmp
cat date.xsl.footer >>date.xsl.tmp
make[6]: Leaving directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE'
.../SOURCE_TOOLS/mv_if_diff date.xsl.tmp date.xsl
date.xsl created.
---------------------------------------------------
------------ Generating some help files:
(cd genhelp;/usr/bin/make all)
make[6]: Entering directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE/genhelp'
Updating copyright.hlp from /Â«PKGBUILDDIRÂ»/arb_LICENSE.txt
Updating changes.hlp from /Â«PKGBUILDDIRÂ»/arb_CHANGES.txt
Updating agde_raxml.hlp from /Â«PKGBUILDDIRÂ»/GDEHELP/HELP_WRITTEN/raxml.help
Updating GDE overview agde.hlp
make[6]: Leaving directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE/genhelp'
mkdir -p Xml
mkdir -p Xml/prompt
mkdir -p ../lib/help_html
mkdir -p ../lib/help_html/prompt
mkdir -p ../lib/help
mkdir -p ../lib/help/prompt
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_HELP_SOURCE -c arb_help2xml.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include 
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/bin/arb_help2xml arb_help2xml.o ../XML/XML.a -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB
cp -p oldhelp/consensus.ps.gz ../lib/help/consensus.ps.gz
cp -p oldhelp/pos_variability.ps.gz ../lib/help/pos_variability.ps.gz
cp -p oldhelp/arb.pdf.gz ../lib/help/arb.pdf.gz
cp -p oldhelp/rna3d_manual.pdf.gz ../lib/help/rna3d_manual.pdf.gz
if [ -d ../lib/help_html ] ; then find ../lib/help_html -name "*.html" -size -1 -exec rm {} \; ; fi
--------------------------------------------------- [old hlp 2 xml]
time /usr/bin/make xml
make[5]: time: Command not found
make[5]: *** [all] Error 127
make[5]: Leaving directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE'
make[4]: *** [HELP_SOURCE/HELP_SOURCE.dummy] Error 1
make[4]: Leaving directory `/Â«PKGBUILDDIRÂ»'
make[3]: *** [arb] Error 2
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»'
make[2]: *** [all] Error 2
make[2]: Leaving directory `/Â«PKGBUILDDIRÂ»'
make[2]: Entering directory `/Â«PKGBUILDDIRÂ»'
-------------------------------------------------------------------------------- Make everything in TREEGEN
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/TREEGEN'
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c base.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c defines.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c frand.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c readcfg.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c rns.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
rns.c: In function 'calcMutationMatrix':
rns.c:367:66: warning: unused parameter 'muteRate' [-Wunused-parameter]
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c sim.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c simcfg.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_TREEGEN -c spreadin.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o TREEGEN.a  base.o defines.o frand.o readcfg.o rns.o sim.o simcfg.o spreadin.o
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/TREEGEN'
-------------------- Checking bin/arb_treegen
Target 'bin/arb_treegen' not found
-> rebuilding bin/arb_treegen (Wed Dec 31 17:59:59 1969)
Link bin/arb_treegen
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o bin/arb_treegen -L/Â«PKGBUILDDIRÂ»/LIBLINK TREEGEN/TREEGEN.a 
-------------------------------------------------------------------------------- Make everything in PROBE_SET
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/PROBE_SET'
mkdir -p bin
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_node.o ps_node.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_filebuffer.o ps_filebuffer.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_database.o ps_database.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_tools.o ps_tools.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_show_result.o ps_show_result.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_show_result ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_show_result.o -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB  -lm
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_arb2asciipaths.o ps_arb2asciipaths.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_arb2asciipaths ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_arb2asciipaths.o -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB  -lm
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_my2asciipaths.o ps_my2asciipaths.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_my2asciipaths ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_my2asciipaths.o -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB  -lm
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_my2ascii.o ps_my2ascii.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_my2ascii ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_my2ascii.o -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB  -lm
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_get_probes.o ps_get_probes.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_get_probes ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_get_probes.o -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB  -lm
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_eval_candidates.o ps_eval_candidates.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_eval ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_eval_candidates.o -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB  -lm
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_find_probes.o ps_find_probes.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_find ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_find_probes.o -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB  -lm
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_detect_weak_differences.o ps_detect_weak_differences.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_detect ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_detect_weak_differences.o -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB  -lm
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_merge_my_dbs.o ps_merge_my_dbs.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_merge ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_merge_my_dbs.o -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB  -lm
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o ps_convert_db.o ps_convert_db.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/ps_convert ps_node.o ps_filebuffer.o ps_database.o ps_tools.o ps_convert_db.o -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB  -lm
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_SET -c -o fb_test.o fb_test.cxx  -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o /Â«PKGBUILDDIRÂ»/PROBE_SET/bin/fb_test ps_node.o ps_filebuffer.o ps_database.o ps_tools.o fb_test.o -L/Â«PKGBUILDDIRÂ»/LIBLINK -lARBDB  -lm
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/PROBE_SET'
-------------------------------------------------------------------------------- Make everything in ALIV3
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/ALIV3'
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
a3.cxx:32:20: warning: 'DArray* ReadMatches(str)' defined but not used [-Wunused-function]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_seq.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
a3_seq.cxx: In function 'char* CompressSequence(str, UINT)':
a3_seq.cxx:85:26: warning: case label value is less than minimum value for type [enabled by default]
a3_seq.cxx:86:26: warning: case label value is less than minimum value for type [enabled by default]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_ptree1.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_ptree2.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_helix.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
a3_helix.cxx: In function 'int FindHelices(str, int, int, A3Matrix&)':
a3_helix.cxx:67:80: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
a3_helix.cxx:68:81: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
a3_helix.cxx:103:92: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
a3_helix.cxx:104:93: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
a3_helix.cxx: At global scope:
a3_helix.cxx:302:13: warning: unused parameter 'minlen' [-Wunused-parameter]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_darray.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
a3_darray.cxx: In member function 'int DArray::Del(int)':
a3_darray.cxx:155:53: warning: deleting 'vp {aka void*}' is undefined [enabled by default]
a3_darray.cxx: In member function 'void DArray::Sort(cmpfunc)':
a3_darray.cxx:204:13: warning: unused variable 'count' [-Wunused-variable]
a3_darray.cxx: In member function 'void DArray::Clear()':
a3_darray.cxx:254:61: warning: deleting 'vp {aka void*}' is undefined [enabled by default]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_ali.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
a3_ali.cxx:68:10: warning: unused parameter 'hel' [-Wunused-parameter]
a3_ali.cxx:68:10: warning: unused parameter 'kon' [-Wunused-parameter]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_matrix.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
a3_matrix.cxx: In member function 'int A3Matrix::Set(int, int, vp)':
a3_matrix.cxx:78:47: warning: deleting 'vp {aka void*}' is undefined [enabled by default]
a3_matrix.cxx: In member function 'void A3Matrix::Clear()':
a3_matrix.cxx:121:51: warning: deleting 'vp {aka void*}' is undefined [enabled by default]
g++   -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_arbdb.cxx -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
gcc -O4 -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DLINUX     -DFAKE_VTAB_PTR=char -DIN_ARB_ALIV3 -c a3_basen.c -I. -I/Â«PKGBUILDDIRÂ»/INCLUDE -I/usr/include
ld -rpath=/usr/lib/arb/lib -r -o ALIV3.a a3.o a3_seq.o a3_ptree1.o a3_ptree2.o a3_helix.o a3_darray.o a3_ali.o a3_matrix.o a3_arbdb.o a3_basen.o 
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/ALIV3'
-------------------------------------------------------------------------------- Make everything in SL/HELIX
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/SL/HELIX'
make[3]: `HELIX.a' is up to date.
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/SL/HELIX'
-------------------------------------------------------------------------------- Make everything in ARBDB
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDB'
make[3]: `libARBDB.a' is up to date.
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDB'
-------------------------------------------------------------------------------- Make everything in ARBDBS
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDBS'
make[3]: `libARBDB.a' is up to date.
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDBS'
-------------------------------------------------------------------------------- Make everything in ARBDB2
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDB2'
make[3]: `libARBDB.a' is up to date.
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDB2'
-------------------------------------------------------------------------------- Make everything in ARBDBPP
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/ARBDBPP'
make[3]: `libARBDBPP.a' is up to date.
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/ARBDBPP'
-------------------------------------------------------------------------------- Make everything in WINDOW
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/WINDOW'
make[3]: `libAW.a' is up to date.
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/WINDOW'
-------------------------------------------------------------------------------- Make everything in AWT
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/AWT'
make[3]: `libAWT.a' is up to date.
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/AWT'
-------------------- Updating shared libraries
/usr/bin/make libs
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»'
make[3]: Nothing to be done for `libs'.
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»'
-------------------------------------------------------------------------------- Link bin/aliv3
g++   -O2 -Wl,-rpath=/usr/lib/arb/lib     -o bin/aliv3 -L/Â«PKGBUILDDIRÂ»/LIBLINK ALIV3/ALIV3.a SL/HELIX/HELIX.a  -lARBDB  -lm
-------------------------------------------------------------------------------- Make everything in XML_IMPORT
make[3]: Entering directory `/Â«PKGBUILDDIRÂ»/XML_IMPORT'
Makefile:19: XML_IMPORT compile broken atm
true
make[3]: Leaving directory `/Â«PKGBUILDDIRÂ»/XML_IMPORT'
make[2]: Leaving directory `/Â«PKGBUILDDIRÂ»'
export LD_LIBRARY_PATH=/Â«PKGBUILDDIRÂ»/lib:${LD_LIBRARY_PATH}; \
	  cd HELP_SOURCE; /usr/bin/make ARBHOME=/Â«PKGBUILDDIRÂ» html
make[2]: Entering directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE'
touch xml.stamp
warning: failed to load external entity "Xml/help.xml"
warning: failed to load external entity "Xml/FAQS.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/version.xml"
warning: failed to load external entity "Xml/arb_commands.xml"
warning: failed to load external entity "Xml/copyright.xml"
warning: failed to load external entity "Xml/changes.xml"
warning: failed to load external entity "Xml/arb_ntree.xml"
warning: failed to load external entity "Xml/arb_pars.xml"
warning: failed to load external entity "Xml/e4.xml"
warning: failed to load external entity "Xml/gde.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/save.xml"
warning: failed to load external entity "Xml/no_tree.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/agde_raxml.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/no_tree.xml"
warning: failed to load external entity "Xml/no_tree.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/props_nds.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/commands.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/commands.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/security.xml"
warning: failed to load external entity "Xml/insdelchar.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/extended.xml"
warning: failed to load external entity "Xml/security.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/nt_align_select.xml"
warning: failed to load external entity "Xml/pfold.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/arb_pars.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/arb_gde.xml"
warning: failed to load external entity "Xml/arb_db.xml"
warning: failed to load external entity "Xml/arb_envar.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/security.xml"
warning: failed to load external entity "Xml/helix.xml"
warning: failed to load external entity "Xml/ecoliref.xml"
warning: failed to load external entity "Xml/exportcursor.xml"
warning: failed to load external entity "Xml/nekey_map.xml"
warning: failed to load external entity "Xml/submission.xml"
warning: failed to load external entity "Xml/ne_search.xml"
warning: failed to load external entity "Xml/ne_replace.xml"
warning: failed to load external entity "Xml/ne_compl.xml"
warning: failed to load external entity "Xml/ne_new_sequence.xml"
warning: failed to load external entity "Xml/ne_copy_sequence.xml"
warning: failed to load external entity "Xml/ne_align_seq.xml"
warning: failed to load external entity "Xml/neprops_data.xml"
warning: failed to load external entity "Xml/neprops.xml"
warning: failed to load external entity "Xml/helixsym.xml"
warning: failed to load external entity "Xml/ne_pretty.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/man_arb_edit4.xml"
warning: failed to load external entity "Xml/e4.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/mark.xml"
warning: failed to load external entity "Xml/nt_align_select.xml"
warning: failed to load external entity "Xml/export_format.xml"
warning: failed to load external entity "Xml/export_format.xml"
warning: failed to load external entity "Xml/sp_info.xml"
warning: failed to load external entity "Xml/export_format.xml"
warning: failed to load external entity "Xml/export_format.xml"
warning: failed to load external entity "Xml/sp_info.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/props_nds.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/props_nds.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/props_nds.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/gde.xml"
warning: failed to load external entity "Xml/gde.xml"
warning: failed to load external entity "Xml/gde.xml"
oldhelp/arb_import.hlp:58: Warning: Dead link to 'agde_readseq.hlp'
oldhelp/arb_import.hlp:58: Warning: Dead link to 'agde_readseq.hlp'
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/saveas.xml"
warning: failed to load external entity "Xml/arb_intro.xml"
warning: failed to load external entity "Xml/importift.xml"
warning: failed to load external entity "Xml/universal_ift.xml"
warning: failed to load external entity "Xml/dewachter_ift.xml"
warning: failed to load external entity "Xml/rdp_ift.xml"
warning: failed to load external entity "Xml/ebi_ift.xml"
warning: failed to load external entity "Xml/fasta_ift.xml"
warning: failed to load external entity "Xml/dssp_ift.xml"
warning: failed to load external entity "Xml/gde_ift.xml"
warning: failed to load external entity "Xml/gde_flat_ift.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/help.xml"
warning: failed to load external entity "Xml/arb_merge.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/save.xml"
warning: failed to load external entity "Xml/manual.xml"
warning: failed to load external entity "Xml/trees.xml"
warning: failed to load external entity "Xml/species.xml"
warning: failed to load external entity "Xml/genes.xml"
warning: failed to load external entity "Xml/extended.xml"
warning: failed to load external entity "Xml/props_nds.xml"
warning: failed to load external entity "Xml/mode.xml"
warning: failed to load external entity "Xml/nt_keys.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/help.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/help.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/mode.xml"
warning: failed to load external entity "Xml/arb_pars_init.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/mode_move.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/mode_move.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/e4.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/sec_mode.xml"
warning: failed to load external entity "Xml/sec_keys.xml"
warning: failed to load external entity "Xml/sec_main.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/pos_var_pars.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/dist.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/set_protection.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/tags.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/tgroupcolor.xml"
warning: failed to load external entity "Xml/set_color_of_listed.xml"
warning: failed to load external entity "Xml/markcolor.xml"
warning: failed to load external entity "Xml/mark.xml"
warning: failed to load external entity "Xml/color_props_groups.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/color_props_groups.xml"
warning: failed to load external entity "Xml/color_props_groups.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/mark.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/exec_bug.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/regexpr.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/regexpr.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/e4.xml"
warning: failed to load external entity "Xml/mark.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/consensus.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/extended.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/consensus_def.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/consensus_def.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/gene_search.xml"
warning: failed to load external entity "Xml/security.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/tags.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/mark.xml"
warning: failed to load external entity "Xml/phylo.xml"
warning: failed to load external entity "Xml/user_matrix.xml"
warning: failed to load external entity "Xml/savedef.xml"
warning: failed to load external entity "Xml/props_frame.xml"
warning: failed to load external entity "Xml/sel_fil.xml"
warning: failed to load external entity "Xml/props_nds.xml"
warning: failed to load external entity "Xml/pfold.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/pfold.xml"
warning: failed to load external entity "Xml/pfold.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/security.xml"
warning: failed to load external entity "Xml/helix.xml"
warning: failed to load external entity "Xml/ecoliref.xml"
warning: failed to load external entity "Xml/man_arb_edit4.xml"
warning: failed to load external entity "Xml/e4_search.xml"
warning: failed to load external entity "Xml/e4_replace.xml"
warning: failed to load external entity "Xml/e4_block.xml"
warning: failed to load external entity "Xml/nekey_map.xml"
warning: failed to load external entity "Xml/helixsym.xml"
warning: failed to load external entity "Xml/pfold.xml"
warning: failed to load external entity "Xml/e4_replace.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/helixsym.xml"
warning: failed to load external entity "Xml/helixsym.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/extended.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/ne_align_seq.xml"
warning: failed to load external entity "Xml/insdelchar.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/species.xml"
warning: failed to load external entity "Xml/helix.xml"
warning: failed to load external entity "Xml/helix.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/next_neighbours_common.xml"
warning: failed to load external entity "Xml/next_neighbours_common.xml"
warning: failed to load external entity "Xml/glossary.xml"
oldhelp/gde.hlp:6: Warning: Dead link to 'ale.hlp'
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/save.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/gene_species.xml"
warning: failed to load external entity "Xml/translate_dna_2_pro.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/gene_mark.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/gene_search.xml"
warning: failed to load external entity "Xml/spaf_reorder.xml"
warning: failed to load external entity "Xml/spaf_delete.xml"
warning: failed to load external entity "Xml/spaf_create.xml"
warning: failed to load external entity "Xml/spaf_scandb.xml"
warning: failed to load external entity "Xml/spa_delete.xml"
warning: failed to load external entity "Xml/spa_rename.xml"
warning: failed to load external entity "Xml/spa_copy.xml"
warning: failed to load external entity "Xml/spa_create.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/gene_mode.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/mark.xml"
warning: failed to load external entity "Xml/gene_species_mark.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/genes.xml"
warning: failed to load external entity "Xml/mark_genes.xml"
warning: failed to load external entity "Xml/mark_list.xml"
warning: failed to load external entity "Xml/unmark_list.xml"
warning: failed to load external entity "Xml/write_field_list.xml"
warning: failed to load external entity "Xml/mod_field_list.xml"
warning: failed to load external entity "Xml/selected_gene.xml"
warning: failed to load external entity "Xml/searching.xml"
warning: failed to load external entity "Xml/searching.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/gene_species_mark.xml"
warning: failed to load external entity "Xml/organisms.xml"
warning: failed to load external entity "Xml/gene_species_field_transfer.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/mark.xml"
warning: failed to load external entity "Xml/glossary.xml"
warning: failed to load external entity "Xml/species.xml"
warning: failed to load external entity "Xml/mark_genes.xml"
warning: failed to load external entity "Xml/selected_gene.xml"
warning: failed to load external entity "Xml/organisms.xml"
warning: failed to load external entity "Xml/trees.xml"
warning: failed to load external entity "Xml/helix.xml"
warning: failed to load external entity "Xml/props_nds.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/species.xml"
warning: failed to load external entity "Xml/selected.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/mark.xml"
warning: failed to load external entity "Xml/mark.xml"
warning: failed to load external entity "Xml/helixsym.xml"
warning: failed to load external entity "Xml/phyl.xml"
warning: failed to load external entity "Xml/mode.xml"
warning: failed to load external entity "Xml/props_www.xml"
warning: failed to load external entity "Xml/phyl.xml"
warning: failed to load external entity "Xml/mode.xml"
warning: failed to load external entity "Xml/props_www.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/input_mask_format.xml"
warning: failed to load external entity "Xml/input_mask_new.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/regexpr.xml"
warning: failed to load external entity "Xml/primer_new.xml"
warning: failed to load external entity "Xml/primer_parameters.xml"
warning: failed to load external entity "Xml/manual.xml"
warning: failed to load external entity "Xml/mode.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/pa_add.xml"
warning: failed to load external entity "Xml/pa_add.xml"
warning: failed to load external entity "Xml/tgroupcolor.xml"
warning: failed to load external entity "Xml/set_color_of_listed.xml"
warning: failed to load external entity "Xml/species_join.xml"
warning: failed to load external entity "Xml/species_join.xml"
warning: failed to load external entity "Xml/rename.xml"
warning: failed to load external entity "Xml/write_field_list.xml"
warning: failed to load external entity "Xml/mod_field_list.xml"
warning: failed to load external entity "Xml/searching.xml"
warning: failed to load external entity "Xml/search_equal_fields.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/searching.xml"
warning: failed to load external entity "Xml/search_equal_fields.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/security.xml"
warning: failed to load external entity "Xml/tags.xml"
warning: failed to load external entity "Xml/regexpr.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/regexpr.xml"
warning: failed to load external entity "Xml/parser.xml"
warning: failed to load external entity "Xml/mode_select.xml"
warning: failed to load external entity "Xml/mode_mark.xml"
warning: failed to load external entity "Xml/mode_group.xml"
warning: failed to load external entity "Xml/mode_pzoom.xml"
warning: failed to load external entity "Xml/mode_lzoom.xml"
warning: failed to load external entity "Xml/mode_info.xml"
warning: failed to load external entity "Xml/mode_www.xml"
warning: failed to load external entity "Xml/mode_width.xml"
warning: failed to load external entity "Xml/mode_rotate.xml"
warning: failed to load external entity "Xml/mode_angle.xml"
warning: failed to load external entity "Xml/mode_swap.xml"
warning: failed to load external entity "Xml/mode_length.xml"
warning: failed to load external entity "Xml/mode_move.xml"
warning: failed to load external entity "Xml/mode_set_root.xml"
warning: failed to load external entity "Xml/mode_reset.xml"
warning: failed to load external entity "Xml/sp_info.xml"
warning: failed to load external entity "Xml/sp_info.xml"
warning: failed to load external entity "Xml/pars.xml"
warning: failed to load external entity "Xml/mode_nni.xml"
warning: failed to load external entity "Xml/mode_optimize.xml"
warning: failed to load external entity "Xml/rst_log_zoom.xml"
warning: failed to load external entity "Xml/pars.xml"
warning: failed to load external entity "Xml/mode_optimize.xml"
warning: failed to load external entity "Xml/pars.xml"
warning: failed to load external entity "Xml/rst_phys_zoom.xml"
warning: failed to load external entity "Xml/multiprobe.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/multiproberesults.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/neprops_data.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/next_neighbours_common.xml"
warning: failed to load external entity "Xml/next_neighbours_common.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/next_neighbours_listed.xml"
warning: failed to load external entity "Xml/nt_align_select.xml"
warning: failed to load external entity "Xml/nt_align_select.xml"
warning: failed to load external entity "Xml/tr_type_radial.xml"
warning: failed to load external entity "Xml/tr_type_list.xml"
warning: failed to load external entity "Xml/treeadm.xml"
warning: failed to load external entity "Xml/tree2file.xml"
warning: failed to load external entity "Xml/tree2prt.xml"
warning: failed to load external entity "Xml/phylo.xml"
warning: failed to load external entity "Xml/phyl.xml"
warning: failed to load external entity "Xml/pars.xml"
warning: failed to load external entity "Xml/organisms.xml"
warning: failed to load external entity "Xml/species.xml"
warning: failed to load external entity "Xml/pa_add_sel.xml"
warning: failed to load external entity "Xml/pa_quick.xml"
warning: failed to load external entity "Xml/partial_sequences.xml"
warning: failed to load external entity "Xml/pars.xml"
warning: failed to load external entity "Xml/pa_quick_sel.xml"
warning: failed to load external entity "Xml/phyl.xml"
warning: failed to load external entity "Xml/phylo.xml"
warning: failed to load external entity "Xml/sel_fil.xml"
warning: failed to load external entity "Xml/sel_fil.xml"
warning: failed to load external entity "Xml/regexpr.xml"
warning: failed to load external entity "Xml/probedesign.xml"
warning: failed to load external entity "Xml/sp_sp_2_ext.xml"
warning: failed to load external entity "Xml/pfold_sai.xml"
warning: failed to load external entity "Xml/pfold_props.xml"
warning: failed to load external entity "Xml/pfold_props.xml"
warning: failed to load external entity "Xml/sp_sp_2_ext.xml"
warning: failed to load external entity "Xml/pfold_sai.xml"
warning: failed to load external entity "Xml/pfold_props.xml"
warning: failed to load external entity "Xml/pfold_props.xml"
warning: failed to load external entity "Xml/sp_sp_2_ext.xml"
warning: failed to load external entity "Xml/sp_sp_2_ext.xml"
warning: failed to load external entity "Xml/primer_parameters.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/probedesign.xml"
warning: failed to load external entity "Xml/probedesignresult.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/probedesignresult.xml"
warning: failed to load external entity "Xml/sel_box.xml"
warning: failed to load external entity "Xml/probematch.xml"
warning: failed to load external entity "Xml/probematch.xml"
warning: failed to load external entity "Xml/pt_server.xml"
warning: failed to load external entity "Xml/sp_info.xml"
warning: failed to load external entity "Xml/tags.xml"
warning: failed to load external entity "Xml/translate_dna_2_pro.xml"
warning: failed to load external entity "Xml/sp_rename.xml"
warning: failed to load external entity "Xml/rna3d_general.xml"
warning: failed to load external entity "Xml/rna3d_general.xml"
warning: failed to load external entity "Xml/rna3d_general.xml"
warning: failed to load external entity "Xml/rna3d_mapSeqData.xml"
warning: failed to load external entity "Xml/sp_info.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/sec_mode.xml"
warning: failed to load external entity "Xml/set_protection.xml"
warning: failed to load external entity "Xml/selected.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/sp_info.xml"
warning: failed to load external entity "Xml/selected.xml"
warning: failed to load external entity "Xml/species.xml"
warning: failed to load external entity "Xml/tgroupcolor.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/sp_info.xml"
warning: failed to load external entity "Xml/sp_info.xml"
warning: failed to load external entity "Xml/sp_search.xml"
warning: failed to load external entity "Xml/spaf_reorder.xml"
warning: failed to load external entity "Xml/spaf_delete.xml"
warning: failed to load external entity "Xml/spaf_create.xml"
warning: failed to load external entity "Xml/spaf_scandb.xml"
warning: failed to load external entity "Xml/spa_delete.xml"
warning: failed to load external entity "Xml/spa_rename.xml"
warning: failed to load external entity "Xml/spa_copy.xml"
warning: failed to load external entity "Xml/spa_create.xml"
warning: failed to load external entity "Xml/sp_sp_2_ext.xml"
warning: failed to load external entity "Xml/species.xml"
warning: failed to load external entity "Xml/unmark_list.xml"
warning: failed to load external entity "Xml/write_field_list.xml"
warning: failed to load external entity "Xml/treeadm.xml"
warning: failed to load external entity "Xml/treeadm.xml"
warning: failed to load external entity "Xml/tree2file.xml"
warning: failed to load external entity "Xml/tree2prt.xml"
warning: failed to load external entity "Xml/tr_type_radial.xml"
warning: failed to load external entity "Xml/tr_type_list.xml"
warning: failed to load external entity "Xml/tr_type_nds.xml"
warning: failed to load external entity "Xml/treeadm.xml"
warning: failed to load external entity "Xml/tree2file.xml"
warning: failed to load external entity "Xml/tree2prt.xml"
warning: failed to load external entity "Xml/tr_type_radial.xml"
warning: failed to load external entity "Xml/tr_type_nds.xml"
warning: failed to load external entity "Xml/treeadm.xml"
warning: failed to load external entity "Xml/tree2file.xml"
warning: failed to load external entity "Xml/tree2prt.xml"
warning: failed to load external entity "Xml/tr_type_radial.xml"
warning: failed to load external entity "Xml/treeadm.xml"
warning: failed to load external entity "Xml/tree2file.xml"
warning: failed to load external entity "Xml/tree2prt.xml"
warning: failed to load external entity "Xml/treeadm.xml"
warning: failed to load external entity "Xml/treeadm.xml"
oldhelp/treeadm.hlp:6: Warning: Dead link to 'tr_export.hlp'
warning: failed to load external entity "Xml/vn_import.xml"
warning: failed to load external entity "Xml/vn_search.xml"
warning: failed to load external entity "Xml/vn_suggest.xml"
cp -p Logo_25wht.gif ../lib/help_html/Logo_25wht.gif
../generate_index.pl help_index.xml Xml > Xml/help_index.xml
make[2]: Leaving directory `/Â«PKGBUILDDIRÂ»/HELP_SOURCE'
make[1]: Leaving directory `/Â«PKGBUILDDIRÂ»'
   dh_auto_test
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   dh_installdirs -a
   dh_auto_install -a
   debian/rules override_dh_install
make[1]: Entering directory `/Â«PKGBUILDDIRÂ»'
dh_install
# remove files from arb package which are in arb-nas
if [ -s debian/arb-nas.install ] ; then \
	    for arbfile in `sed 's?^bin/\([^[:space:]]\+\)[[:space:]]\+\(.\+\)?debian/arb/\2/\1?' debian/arb-nas.install | grep debian/` ; do \
		rm -f ${arbfile} ; \
	    done ; \
	fi
# Move SH/README to docs
cp -a SH/README debian/arb-common/usr/share/doc/arb/README_SH
cp: cannot create regular file `debian/arb-common/usr/share/doc/arb/README_SH': No such file or directory
make[1]: *** [override_dh_install] Error 1
make[1]: Leaving directory `/Â«PKGBUILDDIRÂ»'
make: *** [binary-arch] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2
Sessions still open, not unmounting
â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€
Build finished at 20120205-0349

Finished
â”€â”€â”€â”€â”€â”€â”€â”€

E: Build failure (dpkg-buildpackage died)

â”Œâ”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”
â”‚ Cleanup                                                                      â”‚
â””â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”˜

Purging /Â«BUILDDIRÂ»
Not cleaning session: cloned chroot in use

â”Œâ”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”
â”‚ Summary                                                                      â”‚
â””â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”˜

Architecture: amd64
Build-Space: 76708
Build-Time: 106
Distribution: sid-amd64-shm
Fail-Stage: build
Install-Time: 61
Job: arb_5.3-2.dsc
Package: arb
Package-Time: 209
Source-Version: 5.3-2
Space: 76708
Status: attempted
Version: 5.3-2
â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€â”€
Finished at 20120205-0349
Build needed 00:03:29, 76708k disc space