[Debian-med-packaging] Bug#655788: Bug#655788: Bug#655788: igstk: FTBFS: libITKIO.so: undefined reference to `gdcm::PixmapToPixmapFilter::SetInput(gdcm::Pixmap const&)'

[Steve M. Robbins]

On Sat, Jan 21, 2012 at 11:12:45PM -0500, Dominique Belhachemi wrote:
> Hi Steve,
> 
> It occurred in a clean pbuilder environment on amd64 and the build
> used the latest itk package:
>    Setting up libvxl1.14 (1.14.0-14) ...
>    Setting up libinsighttoolkit3.20 (3.20.1-2) ...

OK, I'm preparing ITK 3.20.1-3 which adds dependency from 
libinsighttoolkit3-dev to libvxl1-dev.  This fixes the
immediate problem ...

> >> CMake Warning at /usr/lib/InsightToolkit/UseITK.cmake:53 (FIND_PACKAGE):
> >>   Could not find module FindVXL.cmake or a configuration file for package
> >>   VXL.

... because FindVXL.cmake is part of libvxl1-dev.

Unfortunately, it exposes a different problem.  The build now requires
file /usr/share/vxl/cmake/doxy_header.html which I cannot find.

Build log (amd64):

 dpkg-source -b igstk-4.4.0
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: patches are not applied, applying them now
dpkg-source: info: applying 12_doxygen.diff
dpkg-source: info: applying 34_disable_resource_intensely_tests.diff
dpkg-source: info: applying 90_examples.diff
dpkg-source: info: applying gcc-4.5.diff
dpkg-source: info: applying 50_kfreebsd.diff
dpkg-source: info: building igstk using existing ./igstk_4.4.0.orig.tar.gz
dpkg-source: info: building igstk in igstk_4.4.0-1.debian.tar.gz
dpkg-source: info: building igstk in igstk_4.4.0-1.dsc
 debian/rules build
test -x debian/rules
mkdir -p "obj-x86_64-linux-gnu"
/usr/share/cdbs/1/rules/buildcore.mk:109: WARNING:  DEB_DH_STRIP_ARGS is a deprecated variable
/usr/bin/make -f debian/rules reverse-config
make[1]: Entering directory `/home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0'
make[1]: Nothing to be done for `reverse-config'.
make[1]: Leaving directory `/home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0'
cd . && QUILT_PATCHES=/home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0/debian/patches quilt --quiltrc /dev/null push -a || test $? = 2
File series fully applied, ends at patch 50_kfreebsd.diff
touch debian/stamp-patched
/usr/bin/make -f debian/rules update-config
make[1]: Entering directory `/home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0'
make[1]: Nothing to be done for `update-config'.
make[1]: Leaving directory `/home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0'
cd obj-x86_64-linux-gnu && cmake /home/steve/Packages/debian-med/trunk/packages/igstk/build-area/igstk-4.4.0/. -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_C_COMPILER:FILEPATH="cc" -DCMAKE_CXX_COMPILER:FILEPATH="g++" -DCMAKE_C_FLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" -DCMAKE_CXX_FLAGS="-g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security -Werror=format-security -Wall" -DCMAKE_SKIP_RPATH=ON -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DCMAKE_BUILD_TYPE:STRING=Release -DCMAKE_CXX_FLAGS="-Wno-deprecated" -DCMAKE_VERBOSE_MAKEFILE=0 -DCMAKE_SHARED_LINKER_FLAGS="-Wl,--as-needed" -DCMAKE_EXE_LINKER_FLAGS="-Wl,--as-needed" -DCMAKE_SKIP_RPATH:BOOL=ON -DIGSTK_WITH_LIBRARY_VERSION:BOOL=ON -DIGSTK_DEVELOPMENT_VERSION:BOOL=ON -DIGSTK_BUILD_EXAMPLES:BOOL=OFF -DIGSTK_BUILD_TESTING:BOOL=ON -DCMAKE_BUILD_TYPE:STRING=Release -DIGSTK_USE_Qt:BOOL=ON -DIGSTK_USE_FLTK:BOOL=ON -DIGSTK_USE_OpenIGTLink:BOOL=ON -DIGSTK_USE_OpenCV:BOOL=OFF -DIGSTK_USE_MicronTracker:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=ON -DQT_MOC_EXECUTABLE:PATH=/usr/bin/moc-qt4 -DQT_UIC_EXECUTABLE:PATH=/usr/bin/uic-qt4 -DQT_QMAKE_EXECUTABLE:PATH=/usr/bin/qmake
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++
-- Check for working CXX compiler: /usr/bin/g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
CMake Warning (dev) at /usr/lib/InsightToolkit/ITKConfig.cmake:50 (IF):
  given arguments:

    "ON"

  An argument named "ON" appears in a conditional statement.  Policy CMP0012
  is not set: if() recognizes numbers and boolean constants.  Run "cmake
  --help-policy CMP0012" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.
Call Stack (most recent call first):
  /usr/share/cmake-2.8/Modules/FindITK.cmake:48 (FIND_PACKAGE)
  CMakeLists.txt:47 (FIND_PACKAGE)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Doxygen: /usr/bin/doxygen 
-- Found Perl: /usr/bin/perl 
CMake Error: File /usr/share/vxl/cmake/doxy_header.html does not exist.
CMake Error at /usr/share/vxl/cmake/doxygen.cmake:203 (configure_file):
  configure_file Problem configuring file
Call Stack (most recent call first):
  /usr/share/vxl/cmake/UseVXL.cmake:135 (INCLUDE)
  /usr/lib/InsightToolkit/UseITK.cmake:55 (INCLUDE)
  CMakeLists.txt:49 (INCLUDE)


-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so
-- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found

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