[Debian-med-packaging] beast-mcmc_1.6.2-2_amd64.changes is NEW

[Andreas Tille]

Dear ftpmasters,

I would like to stress the fact that this is actually no new upload but
rather a rename of a binary package to solve a name space conflict bug
(#679394).  Feel free to inspect the attached debdiff which proves this
point.

It would be great if you could consider some fast processing of this
package to make sure that 1.5 years of work of several people of the
Debian Med team is finally rewarded by getting the package into Wheezy.

Many thanks and sorry for the inconvinience

     Andreas.

On Fri, Jun 29, 2012 at 10:17:11AM +0000, Debian FTP Masters wrote:
> (new) beast-mcmc-doc_1.6.2-2_all.deb optional contrib/doc
> Bayesian MCMC phylogenetic inference - documentation
>  BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
>  sequences. It is entirely orientated towards rooted, time-measured
>  phylogenies inferred using strict or relaxed molecular clock models. It
>  can be used as a method of reconstructing phylogenies but is also a
>  framework for testing evolutionary hypotheses without conditioning on a
>  single tree topology. BEAST uses MCMC to average over tree space, so that
>  each tree is weighted proportional to its posterior probability. Included
>  is a simple to use user-interface program for setting up standard
>  analyses and a suit of programs for analysing the results.
>  .
>  This package contains the documentation.
> (new) beast-mcmc-examples_1.6.2-2_all.deb optional contrib/doc
> Bayesian MCMC phylogenetic inference - example data
>  BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
>  sequences. It is entirely orientated towards rooted, time-measured
>  phylogenies inferred using strict or relaxed molecular clock models. It
>  can be used as a method of reconstructing phylogenies but is also a
>  framework for testing evolutionary hypotheses without conditioning on a
>  single tree topology. BEAST uses MCMC to average over tree space, so that
>  each tree is weighted proportional to its posterior probability. Included
>  is a simple to use user-interface program for setting up standard
>  analyses and a suit of programs for analysing the results.
>  .
>  This package contains the example data.
> beast-mcmc-lib_1.6.2-2_amd64.deb
>   to contrib/b/beast-mcmc/beast-mcmc-lib_1.6.2-2_amd64.deb
> beast-mcmc_1.6.2-2.debian.tar.gz
>   to contrib/b/beast-mcmc/beast-mcmc_1.6.2-2.debian.tar.gz
> beast-mcmc_1.6.2-2.dsc
>   to contrib/b/beast-mcmc/beast-mcmc_1.6.2-2.dsc
> beast-mcmc_1.6.2-2_all.deb
>   to contrib/b/beast-mcmc/beast-mcmc_1.6.2-2_all.deb
> 
> 
> Changes:
> beast-mcmc (1.6.2-2) unstable; urgency=low
>  .
>   * debian/control: rename beast-doc to beast-mcmc-doc
>     Closes: #679394
>     For consistency reasons also rename beast-examples to
>     beast-mcmc-examples
> 
> 
> Override entries for your package:
> beast-mcmc-lib_1.6.2-2_amd64.deb - optional contrib/science
> beast-mcmc_1.6.2-2.dsc - source contrib/science
> beast-mcmc_1.6.2-2_all.deb - optional contrib/science
> 
> Announcing to debian-devel-changes at lists.debian.org
> Closing bugs: 679394 
> 
> 
> Your package contains new components which requires manual editing of
> the override file.  It is ok otherwise, so please be patient.  New
> packages are usually added to the override file about once a week.
> 
> You may have gotten the distribution wrong.  You'll get warnings above
> if files already exist in other distributions.
> 
> _______________________________________________
> Debian-med-packaging mailing list
> Debian-med-packaging at lists.alioth.debian.org
> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
> 

-- 
http://fam-tille.de
-------------- next part --------------
diff -Nru beast-mcmc-1.6.2/debian/beast-doc.install beast-mcmc-1.6.2/debian/beast-doc.install
--- beast-mcmc-1.6.2/debian/beast-doc.install	2011-02-16 17:59:51.000000000 +0100
+++ beast-mcmc-1.6.2/debian/beast-doc.install	1970-01-01 01:00:00.000000000 +0100
@@ -1,2 +0,0 @@
-doc/*.pdf				usr/share/doc/beast-mcmc
-doc/*/*.pdf				usr/share/doc/beast-mcmc
diff -Nru beast-mcmc-1.6.2/debian/beast-examples.install beast-mcmc-1.6.2/debian/beast-examples.install
--- beast-mcmc-1.6.2/debian/beast-examples.install	2011-02-16 18:18:33.000000000 +0100
+++ beast-mcmc-1.6.2/debian/beast-examples.install	1970-01-01 01:00:00.000000000 +0100
@@ -1 +0,0 @@
-examples/release/*	usr/share/doc/beast-mcmc/examples
diff -Nru beast-mcmc-1.6.2/debian/beast-mcmc-doc.install beast-mcmc-1.6.2/debian/beast-mcmc-doc.install
--- beast-mcmc-1.6.2/debian/beast-mcmc-doc.install	1970-01-01 01:00:00.000000000 +0100
+++ beast-mcmc-1.6.2/debian/beast-mcmc-doc.install	2011-02-16 17:59:51.000000000 +0100
@@ -0,0 +1,2 @@
+doc/*.pdf				usr/share/doc/beast-mcmc
+doc/*/*.pdf				usr/share/doc/beast-mcmc
diff -Nru beast-mcmc-1.6.2/debian/beast-mcmc-examples.install beast-mcmc-1.6.2/debian/beast-mcmc-examples.install
--- beast-mcmc-1.6.2/debian/beast-mcmc-examples.install	1970-01-01 01:00:00.000000000 +0100
+++ beast-mcmc-1.6.2/debian/beast-mcmc-examples.install	2011-02-16 18:18:33.000000000 +0100
@@ -0,0 +1 @@
+examples/release/*	usr/share/doc/beast-mcmc/examples
diff -Nru beast-mcmc-1.6.2/debian/changelog beast-mcmc-1.6.2/debian/changelog
--- beast-mcmc-1.6.2/debian/changelog	2012-06-07 21:20:19.000000000 +0200
+++ beast-mcmc-1.6.2/debian/changelog	2012-06-29 11:45:20.000000000 +0200
@@ -1,3 +1,12 @@
+beast-mcmc (1.6.2-2) unstable; urgency=low
+
+  * debian/control: rename beast-doc to beast-mcmc-doc
+    Closes: #679394
+    For consistency reasons also rename beast-examples to
+    beast-mcmc-examples
+
+ -- Andreas Tille <tille at debian.org>  Fri, 29 Jun 2012 11:24:51 +0200
+
 beast-mcmc (1.6.2-1) unstable; urgency=low
 
   * Initial release. (Closes: #552101)
diff -Nru beast-mcmc-1.6.2/debian/control beast-mcmc-1.6.2/debian/control
--- beast-mcmc-1.6.2/debian/control	2012-06-07 21:18:25.000000000 +0200
+++ beast-mcmc-1.6.2/debian/control	2012-06-29 11:44:29.000000000 +0200
@@ -20,7 +20,7 @@
 Architecture: all
 Depends: ${shlibs:Depends}, ${misc:Depends}, ${java:Depends}, openjdk-6-jre | java-jre,
  beast-mcmc-lib, xterm | x-terminal-emulator
-Suggests: beast-doc
+Suggests: beast-mcmc-doc
 Description: Bayesian MCMC phylogenetic inference
  BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
  sequences. It is entirely orientated towards rooted, time-measured 
@@ -35,7 +35,7 @@
 Package: beast-mcmc-lib
 Architecture: any
 Depends: ${shlibs:Depends}, ${misc:Depends}
-Suggests: beast-doc
+Suggests: beast-mcmc-doc
 Description: Bayesian MCMC phylogenetic inference
  BEAST is a cross-platform program for Bayesian MCMC analysis of molecular 
  sequences. It is entirely orientated towards rooted, time-measured 
@@ -49,7 +49,7 @@
  .
  This package contains an architecture dependent library.
 
-Package: beast-examples
+Package: beast-mcmc-examples
 Architecture: all
 Section: contrib/doc
 Depends: ${shlibs:Depends}, ${misc:Depends}
@@ -67,7 +67,7 @@
  .
  This package contains the example data.
 
-Package: beast-doc
+Package: beast-mcmc-doc
 Architecture: all
 Section: contrib/doc
 Depends: ${shlibs:Depends}, ${misc:Depends}