[Debian-med-packaging] Bug#672526: bowtie: FTBFS:

[Christoph Egger]

Package: src:bowtie2
Version: 2.0.0-beta5-2
Severity: serious
Tags: sid wheezy
Justification: fails to build from source (but built successfully in the past)

Hi!

Your package failed to build on the buildds:

aligner_swsse_ee_u8.cpp:927:24: error: 'struct SSEMatrix' has no member named 'hvec'
aligner_swsse_ee_u8.cpp: In member function 'bool SwAligner::backtraceNucleotidesEnd2EndSseU8(TAlScore, SwResult&, size_t&, size_t&, size_t, size_t, RandomSource&)':
aligner_swsse_ee_u8.cpp:1053:2: error: '__m128i' was not declared in this scope
aligner_swsse_ee_u8.cpp:1053:11: error: 'cur_vec' was not declared in this scope
aligner_swsse_ee_u8.cpp:1053:21: error: 'left_vec' was not declared in this scope
aligner_swsse_ee_u8.cpp:1053:32: error: 'up_vec' was not declared in this scope
aligner_swsse_ee_u8.cpp:1053:41: error: 'upleft_vec' was not declared in this scope
aligner_swsse_ee_u8.cpp:1054:2: error: 'class EList_m128i' has no member named 'ptr'
aligner_swsse_ee_u8.cpp:1284:5: error: 'class EList_m128i' has no member named 'ptr'
make[2]: *** [bowtie2-align] Error 1
make[2]: Leaving directory `/build/buildd-bowtie2_2.0.0-beta5-2-kfreebsd-i386-cn0TLn/bowtie2-2.0.0-beta5'
dh_auto_build: make -j1 ENABLE_SSE= returned exit code 2
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory `/build/buildd-bowtie2_2.0.0-beta5-2-kfreebsd-i386-cn0TLn/bowtie2-2.0.0-beta5'
make: *** [build-arch] Error 2

Full build log at
https://buildd.debian.org/status/fetch.php?pkg=bowtie2&arch=kfreebsd-i386&ver=2.0.0-beta5-2&stamp=1336654193

Regards

    Christoph

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