[Debian-med-packaging] Bug#673159: bowtie2: FTBFS[{kfreebsd, hurd}-i386]: error: #error "SSE2 instruction set not enabled"

[Christoph Egger]

Package: src:bowtie2
Version: 2.0.0-beta6-1
Severity: serious
Tags: sid wheezy
User: debian-bsd at lists.debian.org
Usertags: kfreebsd
X-Debbugs-Cc: debian-bsd at lists.debian.org
Justification: fails to build from source (but built successfully in the past)

Hi!

Your package failed to build on the {hurd,kfreebsd}-i386 buildds:

/usr/bin/g++ -O3   -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3   -funroll-loops -g3 \""  \
		-fno-strict-aliasing -DBOWTIE2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_PTHREADS -DPREFETCH_LOCALITY=2 -DBOWTIE_MM  -DBOWTIE2 -DNDEBUG -Wall \
		 \
		-o bowtie2-align bt2_search.cpp \
		ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp bt2_idx.cpp bt2_io.cpp bt2_util.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp qual.cpp pat.cpp sam.cpp read_qseq.cpp aligner_seed_policy.cpp aligner_seed.cpp aligner_sw.cpp aligner_sw_driver.cpp aligner_cache.cpp aligner_result.cpp ref_coord.cpp mask.cpp pe.cpp aln_sink.cpp dp_framer.cpp scoring.cpp presets.cpp unique.cpp aligner_bt.cpp sse_util.cpp aligner_swsse.cpp outq.cpp aligner_swsse_loc_i16.cpp aligner_swsse_ee_i16.cpp aligner_swsse_loc_u8.cpp aligner_swsse_ee_u8.cpp bowtie_main.cpp \
		 -lpthread
In file included from aligner_sw.h:72:0,
                 from bt2_search.cpp:47:
[...]

Full build log at
https://buildd.debian.org/status/fetch.php?pkg=bowtie2&arch=kfreebsd-i386&ver=2.0.0-beta6-1&stamp=1337068947

Regards

    Christoph

If you have further questions please mail debian-bsd at lists.debian.org

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