[Debian-med-packaging] Bug#712328: biomaj: FTBFS: [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/ant/task/BmajExecute.java:543: cannot find symbol

[David Suárez]

Source: biomaj
Version: 1.2.1-2
Severity: serious
Tags: jessie sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20130609 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> make[1]: Entering directory `/«PKGBUILDDIR»'
> echo 
> 
> ant -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 -f usr/share/biomaj/build.xml
> Buildfile: /«PKGBUILDDIR»/usr/share/biomaj/build.xml
> 
> test_env:
> 
> compile:
>     [mkdir] Created dir: /«PKGBUILDDIR»/usr/share/biomaj/build/classes
>     [mkdir] Created dir: /«PKGBUILDDIR»/usr/share/biomaj/dist
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/build.xml:110: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
>     [javac] Compiling 137 source files to /«PKGBUILDDIR»/usr/share/biomaj/build/classes
>     [javac] /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/ant/task/BmajExecute.java:543: cannot find symbol
>     [javac] symbol  : method getRecursiveProperty(java.util.Hashtable<java.lang.String,java.lang.Object>,java.lang.String)
>     [javac] location: class org.inria.biomaj.exe.bank.BankFactory
>     [javac] 				String res = BankFactory.getRecursiveProperty(getProject().getProperties(), key);
>     [javac] 				                        ^
>     [javac] Note: Some input files use or override a deprecated API.
>     [javac] Note: Recompile with -Xlint:deprecation for details.
>     [javac] Note: /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/ant/task/BmajSymlink.java uses unchecked or unsafe operations.
>     [javac] Note: Recompile with -Xlint:unchecked for details.
>     [javac] 1 error
> 
> BUILD FAILED
> /«PKGBUILDDIR»/usr/share/biomaj/build.xml:110: Compile failed; see the compiler error output for details.
> 
> Total time: 10 seconds
> make[1]: *** [override_dh_auto_build] Error 1

The full build log is available from:
   http://aws-logs.debian.net/ftbfs-logs/2013/06/09/biomaj_1.2.1-2_unstable.log

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.