[Debian-med-packaging] Bug#722650: grinder, libbio-perl-perl: error when trying to install together

[Andreas Beckmann]

clone 722650 -1
reassign 722650 grinder 0.5.3-2
retitle -1 grinder: some perl modules are now in libbio-perl-perl
fixed 722650 0.5.3-3
close 722650
reassign -1 libbio-perl-perl 1.6.920-1
retitle -1 libbio-perl-perl: incorporated some perl modules from grinder
user debian-qa at lists.debian.org
usertag 722650 piuparts
usertag -1 piuparts
thanks

On 2013-09-13 09:28, Andreas Tille wrote:
> Hi,
> 
> the problem is fixed in Git - no reason to spend time in further tagging
> + checking versions etc.  Will upload until noon.

This needs a fix in libbio-perl-perl, too:

  Breaks: grinder (<< 0.5.3-3~)
  Replaces: grinder (<< 0.5.3-3~)

because upgrading from jessie to sid fails with

  Preparing to replace libbio-perl-perl 1.6.901-4 (using .../libbio-perl-perl_1.6.920-1_all.deb) ...
  Unpacking replacement libbio-perl-perl ...
  dpkg: error processing /var/cache/apt/archives/libbio-perl-perl_1.6.920-1_all.deb (--unpack):
   trying to overwrite '/usr/share/perl5/Bio/SeqFeature/Amplicon.pm', which is also in package grinder 0.5.3-2
  dpkg-deb: error: subprocess paste was killed by signal (Broken pipe)
  Preparing to replace grinder 0.5.3-2 (using .../grinder_0.5.3-3_all.deb) ...
  Unpacking replacement grinder ...
  Errors were encountered while processing:
   /var/cache/apt/archives/libbio-perl-perl_1.6.920-1_all.deb


Andreas