[Debian-med-packaging] [mrtrix] 02/03: Merge tag 'upstream/0.2.12'

Michael Hanke mih at moszumanska.debian.org
Sun Mar 9 06:43:28 UTC 2014


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mih pushed a commit to branch master
in repository mrtrix.

commit cc5f3301f57d3814d277fc4601ce375272d8cad1
Merge: ba21677 c702e79
Author: Michael Hanke <michael.hanke at gmail.com>
Date:   Sat Mar 8 20:25:58 2014 +0100

    Merge tag 'upstream/0.2.12'
    
    Upstream version 0.2.12
    
    # gpg: Signature made Sat 08 Mar 2014 08:25:53 PM CET using RSA key ID 7FFB9E9B
    # gpg: Good signature from "Michael Hanke <michael.hanke at gmail.com>"
    # gpg:                 aka "Michael Hanke <michael.hanke at dartmouth.edu>"
    # gpg:                 aka "Michael Hanke <michael.hanke at ovgu.de>"
    # gpg:                 aka "[jpeg image of size 1962]"
    # gpg:                 aka "Michael Hanke <mih at voxindeserto.de>"
    # gpg:                 aka "Michael Hanke <mih at debian.org>"

 Doxyfile                                       |   2 +-
 build                                          | 544 +++++++++++++------------
 cmd/cat_tracks.cpp                             |  94 +++++
 cmd/csdeconv.cpp                               |   2 +-
 cmd/disp_profile.cpp                           |   2 +-
 cmd/dwi2tensor.cpp                             |   2 +-
 cmd/estimate_response.cpp                      |   2 +-
 cmd/find_SH_peaks.cpp                          |   6 +-
 cmd/gen_ROI.cpp                                |   2 +-
 cmd/median3D.cpp                               |   6 +-
 cmd/mradd.cpp                                  |   2 +-
 cmd/mrcat.cpp                                  |   2 +-
 cmd/mrconvert.cpp                              |  24 +-
 cmd/mrstats.cpp                                |   6 +-
 cmd/mrtransform.cpp                            |   6 +-
 cmd/mrview.cpp                                 |   1 +
 cmd/streamtrack.cpp                            |  12 +-
 cmd/threshold.cpp                              |   8 +-
 cmd/tracks2prob.cpp                            |   6 +-
 doc/appendix/config.html                       |   6 +-
 doc/appendix/index.html                        |   6 +-
 doc/appendix/mrtrix.html                       |   6 +-
 doc/appendix/refs.html                         |   6 +-
 doc/commands/average.html                      |   8 +-
 doc/commands/{mradd.html => cat_tracks.html}   |  26 +-
 doc/commands/cleanup_ANTS_warp.html            |   8 +-
 doc/commands/csdeconv.html                     |   6 +-
 doc/commands/dicom_filename.html               |   6 +-
 doc/commands/dir2amp.html                      |   6 +-
 doc/commands/disp_profile.html                 |   6 +-
 doc/commands/dwi2SH.html                       |   6 +-
 doc/commands/dwi2tensor.html                   |   6 +-
 doc/commands/erode.html                        |   6 +-
 doc/commands/estimate_response.html            |   6 +-
 doc/commands/filter_tracks.html                |   6 +-
 doc/commands/find_SH_peaks.html                |   6 +-
 doc/commands/gen_ROI.html                      |   6 +-
 doc/commands/gen_WM_mask.html                  |   6 +-
 doc/commands/gen_unit_warp.html                |   6 +-
 doc/commands/gendir.html                       |   6 +-
 doc/commands/import_tracks.html                |   6 +-
 doc/commands/index.html                        |   5 +-
 doc/commands/median3D.html                     |   6 +-
 doc/commands/mrabs.html                        |   6 +-
 doc/commands/mradd.html                        |   6 +-
 doc/commands/mrcat.html                        |   6 +-
 doc/commands/mrconvert.html                    |  14 +-
 doc/commands/mrinfo.html                       |   6 +-
 doc/commands/mrmult.html                       |   6 +-
 doc/commands/mrstats.html                      |   6 +-
 doc/commands/mrtransform.html                  |   6 +-
 doc/commands/mrview.html                       |   6 +-
 doc/commands/normalise_tracks.html             |   6 +-
 doc/commands/read_dicom.html                   |   6 +-
 doc/commands/read_ximg.html                    |   6 +-
 doc/commands/resample_tracks.html              |   6 +-
 doc/commands/sample_tracks.html                |   6 +-
 doc/commands/sdeconv.html                      |   6 +-
 doc/commands/select_tracks.html                |   6 +-
 doc/commands/streamtrack.html                  |   6 +-
 doc/commands/tensor2ADC.html                   |   6 +-
 doc/commands/tensor2FA.html                    |   6 +-
 doc/commands/tensor2vector.html                |   6 +-
 doc/commands/tensor_metric.html                |   6 +-
 doc/commands/threshold.html                    |   6 +-
 doc/commands/track_info.html                   |   6 +-
 doc/commands/tracks2prob.html                  |   6 +-
 doc/commands/tracks2vtk.html                   |   6 +-
 doc/commands/truncate_tracks.html              |   6 +-
 doc/faq.html                                   |   6 +-
 doc/general/cmdline.html                       |   6 +-
 doc/general/formats.html                       |   6 +-
 doc/general/index.html                         |   6 +-
 doc/general/mrview.html                        |   6 +-
 doc/general/overview.html                      |   6 +-
 doc/index.html                                 |   8 +-
 doc/install/index.html                         |   6 +-
 doc/install/macosx.html                        |   6 +-
 doc/install/unix.html                          |   6 +-
 doc/install/windows.html                       |   6 +-
 doc/intro.html                                 |   6 +-
 doc/tractography/dwi.html                      |   6 +-
 doc/tractography/index.html                    |   6 +-
 doc/tractography/preprocess.html               |   6 +-
 doc/tractography/roi.html                      |   6 +-
 doc/tractography/tracking.html                 |   6 +-
 lib/file/dicom/image.cpp                       |   2 +-
 lib/file/dicom/mapper.cpp                      |  72 +++-
 lib/image/format/analyse.cpp                   |   4 +-
 lib/image/format/nifti1.cpp                    |   4 +-
 lib/image/name_parser.cpp                      |  11 +-
 lib/image/object.cpp                           |   2 +-
 lib/image/position.h                           |   4 +-
 lib/math/vector.h                              |   4 +-
 lib/mrtrix.cpp                                 |   2 +-
 lib/mrtrix.h                                   |   8 +-
 lib/svn_revision.h                             |   2 +-
 matlab/write_mrtrix.m                          |   4 +-
 src/dwi/SH.cpp                                 |   8 +-
 src/dwi/gradient.cpp                           |  44 +-
 src/dwi/render_frame.cpp                       |   4 +-
 src/dwi/render_frame.h                         |   2 +-
 src/dwi/renderer.cpp                           |   2 +-
 src/dwi/sdeconv/MCMC.cpp                       |   4 +-
 src/dwi/shells.h                               | 269 ++++++++++++
 src/dwi/tractography/tracker/base.cpp          |   1 +
 src/dwi/tractography/tracker/base.h            |  17 +-
 src/dwi/tractography/tracker/dt_stream.h       |   3 +-
 src/dwi/tractography/tracker/sd_prob.cpp       |  27 +-
 src/dwi/tractography/tracker/sd_prob.h         |   7 +
 src/dwi/tractography/tracker/sd_stream.cpp     |  25 +-
 src/dwi/tractography/tracker/sd_stream.h       |  24 --
 src/histogram.cpp                              |   4 +-
 src/mrview/image.cpp                           |   4 +-
 src/mrview/pane.cpp                            |   3 +-
 src/mrview/sidebar/overlay.cpp                 |   4 +-
 src/mrview/sidebar/roi_analysis.cpp            |  45 +-
 src/mrview/sidebar/roi_analysis.h              |  13 +-
 src/mrview/sidebar/roi_analysis/roi_list.cpp   | 388 ++++++++++++++++--
 src/mrview/sidebar/roi_analysis/roi_list.h     |  70 +++-
 src/mrview/sidebar/tractography.cpp            |   1 +
 src/mrview/sidebar/tractography/roi_list.cpp   |   1 +
 src/mrview/sidebar/tractography/track_list.cpp |   1 +
 src/mrview/window.cpp                          |   1 +
 sysconf/darwin.py                              |  14 +-
 sysconf/linux.py                               |   4 +-
 126 files changed, 1584 insertions(+), 689 deletions(-)

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