From eunyoungkim at google.com Sat Nov 1 00:00:16 2014 From: eunyoungkim at google.com (Eunyoung Kim) Date: Fri, 31 Oct 2014 17:00:16 -0700 Subject: [Debian-med-packaging] ImageJ ports on samsam99.mtv.corp.google.com Message-ID: <20141101000017.03AC6101441@samsam99.mtv.corp.google.com> Port locks on samsam99.mtv.corp.google.com reached 137 From eunyoungkim at google.com Sat Nov 1 00:00:56 2014 From: eunyoungkim at google.com (Eunyoung Kim) Date: Fri, 31 Oct 2014 17:00:56 -0700 Subject: [Debian-med-packaging] ImageJ ports on samsam99.mtv.corp.google.com Message-ID: <20141101000056.939F0101441@samsam99.mtv.corp.google.com> Port locks on samsam99.mtv.corp.google.com reached 139 From eunyoungkim at google.com Sat Nov 1 00:01:22 2014 From: eunyoungkim at google.com (Eunyoung Kim) Date: Fri, 31 Oct 2014 17:01:22 -0700 Subject: [Debian-med-packaging] ImageJ ports on samsam99.mtv.corp.google.com Message-ID: <20141101000122.1062D101441@samsam99.mtv.corp.google.com> Port locks on samsam99.mtv.corp.google.com reached 140 From adelia.mendes at tce.am.gov.br Sat Nov 1 00:33:43 2014 From: adelia.mendes at tce.am.gov.br (Ruth Horwitz) Date: Fri, 31 Oct 2014 20:33:43 -0400 (AMT) Subject: [Debian-med-packaging] Congratulations In-Reply-To: <1417932794.1548062.1414801975312.JavaMail.root@tce.am.gov.br> Message-ID: <1387541232.1548129.1414802023870.JavaMail.root@tce.am.gov.br> Dear E-mail Account User, After a random automated selection of email addresses over the Internet, your email emerged as one of our special winners to receive ?3,252,590.00 and is attached to the following details: FILE CATEGORY - LOTTTO-ENGLAND/01/2014 Ticket No: 13/299 Reference Number: 89,DW,83/LOTTO-LUCKY5 To confirm the authenticity and validity of your winnings as well as to commence receipts of your entitlement, you MUST FORWARD a copy of this announcement as well as your FULL NAMES - VALID MOBILE/CELL NO. - COUNTRY OF RESIDENCE - to our Winnings Director via contact information below: Mr.Michael Thompson, Winnings Director, Automated Winnings Department, Email: michael_wd at foxmail.com Yours faithfully, Ruth Horwitz, Automated Winnings Coordinator, Automated Winnings Department Email: rhorwitz984 at gmail.com From shane358 at gmail.com Sat Nov 1 17:59:10 2014 From: shane358 at gmail.com (Shane.Mason) Date: Sat, 1 Nov 2014 17:59:10 +0000 (GMT) Subject: [Debian-med-packaging] The California International Human Right Organization (CIHRO) Conference Invitation Message-ID: <23884774.23800.1414864750718.JavaMail.root@desknow1.wirral-education.org.uk> The California International Human Right Organization (CIHRO) Conference Invitation U.S.A/Senegal. All interested delegates should contact us via Email: shane3580 at gmail.com Dear Friends and Colleagues, The California International Human Right Organization (CIHRO) Committee, extend a warm and cordial invitation to you, to participate at the 2014 international convention on Child Abuse and Force Labour. The Conference will consist of two phases and on different locations. The first phase will be taking place from 13th ? 15th December 2014 in California United State of America and the Second segment shall commence on the 17th ? 22nd December 2014 at Gaston Berger University conference hall in Saint-Louis Senegal. The summit will deliver interactive workshop sessions that will enable delegates to share best practice, prisoners and people vulnerable to human trafficking with evidence-informed comprehensive HIV prevention, treatment and care services. For registration and more information you are to contact us via Email: (shane3580 at gmail.com) or Phone: +1- (775) 238-3331. We will return your call within 24 hours. Please share the information with your friends and colleagues Sincerely, Ms. Shane Mason Email: shane3580 at gmail.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From acastillo at minamb.gob.ve Sat Nov 1 22:01:47 2014 From: acastillo at minamb.gob.ve (Glenn Taylor) Date: Sun, 02 Nov 2014 00:01:47 +0200 Subject: [Debian-med-packaging] Good Day To You Message-ID: <20141101220024.6CDF22FC3948@mail.minamb.gob.ve> Please find attached letter and do get back to me. Thanks, Glenn -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: GLENN TAYLOR.docx Type: application/octet-stream Size: 13786 bytes Desc: not available URL: From owner at bugs.debian.org Sun Nov 2 14:55:46 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Sun, 02 Nov 2014 14:55:46 +0000 Subject: [Debian-med-packaging] Processed (with 4 errors): notfixed 744590 in 2.1.4-2, fixed 744590 in 2.1.4-2, notfixed 488312 in 2.14.2-1 ..., tagging 765176 ... References: <1414939883-3076-bts-anbe@debian.org> Message-ID: Processing commands for control at bugs.debian.org: > # bts housekeeping: > # fixup versioning of fixed bugs that the bts considers to be not fixed > # reassign+affects bugs fixed in other packages > # unreproducible-or-not-a-bug must not be closed with a version, especially not the reported one (or a fake one) > # bts does not understand fixed-in-binNMU > # > notfixed 744590 2.1.4-2 Bug #744590 {Done: "Matteo F. Vescovi" } [src:gtkpod] gtkpod: run dh-autoreconf to update config.{sub,guess} and {libtool,aclocal}.m4 No longer marked as fixed in versions gtkpod/2.1.4-2 and src:gtkpod/2.1.4-2. > fixed 744590 2.1.4-2 Bug #744590 {Done: "Matteo F. Vescovi" } [src:gtkpod] gtkpod: run dh-autoreconf to update config.{sub,guess} and {libtool,aclocal}.m4 Marked as fixed in versions gtkpod/2.1.4-2. > notfixed 488312 2.14.2-1 Bug #488312 {Done: Andreas Henriksson } [mount] segfaults when create_mtab can't determine the fsname Bug #532043 {Done: Andreas Henriksson } [mount] Debootstrap segfault during installation : testing i386 netinstall Bug #532050 {Done: Andreas Henriksson } [mount] deboostrap segfault at mount There is no source info for the package 'mount' at version '2.14.2-1' with architecture '' Unable to make a source version for version '2.14.2-1' No longer marked as fixed in versions 2.14.2-1. No longer marked as fixed in versions 2.14.2-1. No longer marked as fixed in versions 2.14.2-1. > fixed 488312 1:2.14.2-1 Bug #488312 {Done: Andreas Henriksson } [mount] segfaults when create_mtab can't determine the fsname Bug #532043 {Done: Andreas Henriksson } [mount] Debootstrap segfault during installation : testing i386 netinstall Bug #532050 {Done: Andreas Henriksson } [mount] deboostrap segfault at mount There is no source info for the package 'mount' at version '1:2.14.2-1' with architecture '' Unable to make a source version for version '1:2.14.2-1' Marked as fixed in versions 1:2.14.2-1. Marked as fixed in versions 1:2.14.2-1. Marked as fixed in versions 1:2.14.2-1. > tags 765176 + unreproducible Bug #765176 {Done: Samuel Wolf } [nautilus] "Nautilus shows bookmarks numerously" Added tag(s) unreproducible. > # try to fix bts inconsistency > unmerge 133607 Failed to unmerge 133607: Bug 133607 mergedwith differs from bug 153040: (153040: '56542 133607 160973 182971 303103 363246 369165 382701') vs. ('133607 160973 182971 303103 363246 369165 382701 56542') (56542 153040 160973 182971 303103 363246 369165 382701 133607). > unmerge 56542 Failed to unmerge 56542: Bug 56542 mergedwith differs from bug 133607: (133607: '56542 153040 160973 182971 303103 363246 369165 382701') vs. ('153040 160973 182971 303103 363246 369165 382701 56542') (133607 153040 160973 182971 303103 363246 369165 382701 56542). > forcemerge 56542 133607 153040 Failed to forcibly merge 56542: Bug 56542 mergedwith differs from bug 133607: (133607: '56542 153040 160973 182971 303103 363246 369165 382701') vs. ('153040 160973 182971 303103 363246 369165 382701 56542') (133607 153040 160973 182971 303103 363246 369165 382701 56542). > notfixed 56542 21.4.22-4+rm Failed to remove fixed on 56542: Bug 56542 mergedwith differs from bug 133607: (133607: '56542 153040 160973 182971 303103 363246 369165 382701') vs. ('153040 160973 182971 303103 363246 369165 382701 56542') (133607 153040 160973 182971 303103 363246 369165 382701 56542). > reassign 581660 bash Bug #581660 {Done: Julian Gilbey } [bash-completion] umount completion fails when mount point has a space in its name Bug reassigned from package 'bash-completion' to 'bash'. No longer marked as found in versions bash-completion/1:1.1-3. No longer marked as fixed in versions bash/4.3-2. > fixed 581660 4.3-2 Bug #581660 {Done: Julian Gilbey } [bash] umount completion fails when mount point has a space in its name Marked as fixed in versions bash/4.3-2. > affects 581660 bash-completion Bug #581660 {Done: Julian Gilbey } [bash] umount completion fails when mount point has a space in its name Added indication that 581660 affects bash-completion > fixed 742898 1:0.7.1-1 Bug #742898 {Done: Thomas Goirand } [python-keystoneclient] CVE-2014-0105: Potential context confusion in Keystone middleware Marked as fixed in versions python-keystoneclient/1:0.7.1-1. > fixed 746435 2:13.0+dfsg1-1 Bug #746435 {Done: Balint Reczey } [xbmc-bin] Xbmc crash (doesn't found librtmp.so.0) Marked as fixed in versions xbmc/2:13.0+dfsg1-1. > fixed 722011 4.6.4-1 Bug #722011 {Done: Anton Gladky } [gnuplot] gnuplot: plot using with columns and format does not work in stable Marked as fixed in versions gnuplot/4.6.4-1. > reassign 753612 opendnssec Bug #753612 {Done: Ond?ej Sur? } [libsofthsm] libsofthsm: switch to multiarch should have happened Bug reassigned from package 'libsofthsm' to 'opendnssec'. No longer marked as found in versions softhsm/1.3.7-1. No longer marked as fixed in versions opendnssec/1:1.4.5-6. > affects 753612 softhsm Bug #753612 {Done: Ond?ej Sur? } [opendnssec] libsofthsm: switch to multiarch should have happened Added indication that 753612 affects softhsm > fixed 753612 1:1.4.5-6 Bug #753612 {Done: Ond?ej Sur? } [opendnssec] libsofthsm: switch to multiarch should have happened Marked as fixed in versions opendnssec/1:1.4.5-6. > found 753612 softhsm/1.3.7-1 Bug #753612 {Done: Ond?ej Sur? } [opendnssec] libsofthsm: switch to multiarch should have happened Marked as found in versions softhsm/1.3.7-1. > notfixed 726437 0.58.1-1 Bug #726437 {Done: Bernhard } [d1x-rebirth] Screen resolution not restored No longer marked as fixed in versions 0.58.1-1. > notfixed 495261 mount/2.15-1 Bug #495261 {Done: Andreas Henriksson } [mount] mount: list of bind examples not uniform The source mount and version 2.15-1 do not appear to match any binary packages No longer marked as fixed in versions mount/2.15-1. > fixed 495261 2.15-1 Bug #495261 {Done: Andreas Henriksson } [mount] mount: list of bind examples not uniform There is no source info for the package 'mount' at version '2.15-1' with architecture '' Unable to make a source version for version '2.15-1' Marked as fixed in versions 2.15-1. > notfixed 469678 mount/v2.19.1-1 Bug #469678 {Done: Andreas Henriksson } [mount] mount: please provide an option to use an fstab at a different location The source mount and version v2.19.1-1 do not appear to match any binary packages No longer marked as fixed in versions mount/v2.19.1-1. > fixed 469678 2.19.1-1 Bug #469678 {Done: Andreas Henriksson } [mount] mount: please provide an option to use an fstab at a different location Marked as fixed in versions util-linux/2.19.1-1. > notfound 389270 6.3.21-4 Bug #389270 {Done: matthias.andree at gmx.de (Matthias Andree)} [fetchmail] fetchmail: DNS problem in daemon mode No longer marked as found in versions fetchmail/6.3.21-4. > notfixed 744453 0.9.0-7 Bug #744453 {Done: Michael Tautschnig } [src:lnpd] lnpd: run dh-autoreconf to update config.{sub,guess} and {libtool,aclocal}.m4 No longer marked as fixed in versions 0.9.0-7. > fixed 744453 0.9.0-7.1 Bug #744453 {Done: Michael Tautschnig } [src:lnpd] lnpd: run dh-autoreconf to update config.{sub,guess} and {libtool,aclocal}.m4 Marked as fixed in versions lnpd/0.9.0-7.1. > fixed 641469 20140317-1 Bug #641469 {Done: Raphael Geissert } [mobile-broadband-provider-info] mobile-broadband-provider-info: Please provide updates for stable distribution, somehow Marked as fixed in versions mobile-broadband-provider-info/20140317-1. > fixed 660021 7u65-2.5.1-1 Bug #660021 {Done: Matthias Klose } [openjdk-7] Please enable hardened build flags There is no source info for the package 'openjdk-7' at version '7u65-2.5.1-1' with architecture '' Unable to make a source version for version '7u65-2.5.1-1' Marked as fixed in versions 7u65-2.5.1-1. > notfixed 741006 chromium/35.0.1916.153-2 Bug #741006 {Done: "Ben Mesman (Bossers & Cnossen BV)" } [chromium] chromium: with some videos the 'ended'-event does not fire The source chromium and version 35.0.1916.153-2 do not appear to match any binary packages No longer marked as fixed in versions chromium/35.0.1916.153-2. > fixed 741006 35.0.1916.153-2 Bug #741006 {Done: "Ben Mesman (Bossers & Cnossen BV)" } [chromium] chromium: with some videos the 'ended'-event does not fire Marked as fixed in versions chromium-browser/35.0.1916.153-2. > reassign 755724 libxkbcommon-x11-0 Bug #755724 {Done: Michael Stapelberg } [i3lock] i3lock: segfault on start Bug reassigned from package 'i3lock' to 'libxkbcommon-x11-0'. No longer marked as found in versions i3lock/2.6-1. No longer marked as fixed in versions libxkbcommon/0.4.1-2. > fixed 755724 0.4.1-2 Bug #755724 {Done: Michael Stapelberg } [libxkbcommon-x11-0] i3lock: segfault on start Marked as fixed in versions libxkbcommon/0.4.1-2. > affects 755724 i3lock Bug #755724 {Done: Michael Stapelberg } [libxkbcommon-x11-0] i3lock: segfault on start Added indication that 755724 affects i3lock > notfixed 563014 bsdutils/2.25-1 Bug #563014 {Done: Andreas Henriksson } [bsdutils] please add argument to scriptreplay(1) to set maximum delay between output The source bsdutils and version 2.25-1 do not appear to match any binary packages No longer marked as fixed in versions bsdutils/2.25-1. > fixed 563014 1:2.25-1 Bug #563014 {Done: Andreas Henriksson } [bsdutils] please add argument to scriptreplay(1) to set maximum delay between output Marked as fixed in versions util-linux/2.25-1. > reassign 580396 libqt4-core Bug #580396 {Done: Maximiliano Curia } [libkio5] libkio5 exit handler crashes Bug reassigned from package 'libkio5' to 'libqt4-core'. No longer marked as found in versions kde4libs/4:4.4.3-1. No longer marked as fixed in versions 4:4.8.6+dfsg-1. > fixed 580396 4:4.8.6+dfsg-1 Bug #580396 {Done: Maximiliano Curia } [libqt4-core] libkio5 exit handler crashes Marked as fixed in versions qt4-x11/4:4.8.6+dfsg-1. > found 580396 4:4.6.3-4+squeeze1 Bug #580396 {Done: Maximiliano Curia } [libqt4-core] libkio5 exit handler crashes Marked as found in versions qt4-x11/4:4.6.3-4+squeeze1. > affects 580396 libkio5 Bug #580396 {Done: Maximiliano Curia } [libqt4-core] libkio5 exit handler crashes Added indication that 580396 affects libkio5 > notfixed 728430 libspice-client-glib-2.0-8/0.25-1 Bug #728430 {Done: Giuseppe Bilotta } [libspice-client-glib-2.0-8] spice clients crash when connecting to VM The source libspice-client-glib-2.0-8 and version 0.25-1 do not appear to match any binary packages No longer marked as fixed in versions libspice-client-glib-2.0-8/0.25-1. > fixed 728430 0.25-1 Bug #728430 {Done: Giuseppe Bilotta } [libspice-client-glib-2.0-8] spice clients crash when connecting to VM Marked as fixed in versions spice-gtk/0.25-1. > notfixed 569909 7.4.0+svn20120502rev103 Bug #569909 {Done: Willi Mann } [logwatch] logwatch: reports unmatched entries for exim There is no source info for the package 'logwatch' at version '7.4.0+svn20120502rev103' with architecture '' Unable to make a source version for version '7.4.0+svn20120502rev103' No longer marked as fixed in versions 7.4.0+svn20120502rev103. > fixed 569909 7.4.0+svn20120502rev103-1 Bug #569909 {Done: Willi Mann } [logwatch] logwatch: reports unmatched entries for exim Marked as fixed in versions logwatch/7.4.0+svn20120502rev103-1. > reopen 534817 Bug #534817 {Done: Chen Baozi } [joe] (joe_3.7-1/avr32): FTBFS: Outdated config.{sub,guess} 'reopen' may be inappropriate when a bug has been closed with a version; all fixed versions will be cleared, and you may need to re-add them. Bug reopened No longer marked as fixed in versions liblip/2.0.0-1.2. > notfixed 756266 4.9.1-4. Bug #756266 {Done: Matthias Klose } [g++-4.9] g++-4.9: test summaries compressed twice (and why install them at all..?) There is no source info for the package 'g++-4.9' at version '4.9.1-4.' with architecture '' Unable to make a source version for version '4.9.1-4.' No longer marked as fixed in versions 4.9.1-4.. > fixed 756266 4.9.1-4 Bug #756266 {Done: Matthias Klose } [g++-4.9] g++-4.9: test summaries compressed twice (and why install them at all..?) Marked as fixed in versions gcc-4.9/4.9.1-4. > notfixed 756407 10.2.4-1 Bug #756407 {Done: Gregor Jasny } [libgl1-mesa-dri] swrast_dri.so: undefined symbol: _glapi_tls_Dispatch No longer marked as fixed in versions 10.2.4-1. > notfixed 756515 1:17.1-dfsg-4 Bug #756515 {Done: Sergei Golovan } [erlang-edoc] erlang-edoc: edoc crashes on valid Erlang source with tricky macro No longer marked as fixed in versions 1:17.1-dfsg-4. > notfound 730742 2.5.2-2 Bug #730742 {Done: Steve Langasek } [libfreetype6] Font rendering fuzzy (straight lines smeared across subpixels) since upgrade to 2.5.1 No longer marked as found in versions freetype/2.5.2-2. > fixed 762104 0.9-2 Bug #762104 {Done: Dmitry Smirnov } [nocache] nocache not available in wheezy-backports i386 Marked as fixed in versions nocache/0.9-2. > notfixed 684868 1.2.2-1 Bug #684868 {Done: Alexander Wirt } [conntrackd] conntrackd: Conntrackd issue in commit operation There is no source info for the package 'conntrackd' at version '1.2.2-1' with architecture '' Unable to make a source version for version '1.2.2-1' No longer marked as fixed in versions 1.2.2-1. > fixed 684868 1:1.2.2-1 Bug #684868 {Done: Alexander Wirt } [conntrackd] conntrackd: Conntrackd issue in commit operation There is no source info for the package 'conntrackd' at version '1:1.2.2-1' with architecture '' Unable to make a source version for version '1:1.2.2-1' Marked as fixed in versions 1:1.2.2-1. > reassign 740737 gap-scscp Bug #740737 {Done: Jerome Benoit } [gap] gap: configuration support Bug reassigned from package 'gap' to 'gap-scscp'. No longer marked as found in versions gap/4r7p4-1. No longer marked as fixed in versions gap-scscp/2.1.4+ds-1. > fixed 740737 2.1.4+ds-1 Bug #740737 {Done: Jerome Benoit } [gap-scscp] gap: configuration support Marked as fixed in versions gap-scscp/2.1.4+ds-1. > affects 740737 + gap Bug #740737 {Done: Jerome Benoit } [gap-scscp] gap: configuration support Added indication that 740737 affects gap > reassign 737876 flare-game Bug #737876 {Done: Martin Quinson } [flare] flare: menu icon entry missing Bug reassigned from package 'flare' to 'flare-game'. No longer marked as found in versions flare/0.18-1. No longer marked as fixed in versions flare-game/0.19-1. > fixed 737876 0.19-1 Bug #737876 {Done: Martin Quinson } [flare-game] flare: menu icon entry missing Marked as fixed in versions flare-game/0.19-1. > affects 737876 + flare Bug #737876 {Done: Martin Quinson } [flare-game] flare: menu icon entry missing Added indication that 737876 affects flare > reassign 572993 flim Bug #572993 {Done: Tatsuya Kinoshita } [semi] Semi doesn't work well with mailcap file from update-mime Bug reassigned from package 'semi' to 'flim'. No longer marked as found in versions semi/1.14.6+0.20100207-1. No longer marked as fixed in versions flim/1:1.14.9+0.20120428-9. > fixed 572993 1:1.14.9+0.20120428-9 Bug #572993 {Done: Tatsuya Kinoshita } [flim] Semi doesn't work well with mailcap file from update-mime Marked as fixed in versions flim/1:1.14.9+0.20120428-9. > affects 572993 + semi Bug #572993 {Done: Tatsuya Kinoshita } [flim] Semi doesn't work well with mailcap file from update-mime Added indication that 572993 affects semi > found 572993 semi/1.14.6+0.20100207-1 Bug #572993 {Done: Tatsuya Kinoshita } [flim] Semi doesn't work well with mailcap file from update-mime Marked as found in versions semi/1.14.6+0.20100207-1. > reassign 705380 src:libjpeg9 Bug #705380 {Done: Bill Allombert } [src:libjpeg8] libjpeg8: please package the new upstream libjpeg version, libjpeg9 Bug reassigned from package 'src:libjpeg8' to 'src:libjpeg9'. No longer marked as found in versions libjpeg8/8d-1. No longer marked as fixed in versions libjpeg9/9a-1. > fixed 705380 9a-1 Bug #705380 {Done: Bill Allombert } [src:libjpeg9] libjpeg8: please package the new upstream libjpeg version, libjpeg9 Marked as fixed in versions libjpeg9/9a-1. > found 761440 7.40.6-1 Bug #761440 {Done: Jay Berkenbilt } [libvips-tools] libvips-tools: error - vips: unknown action "dzsave" Marked as found in versions vips/7.40.6-1. > notfound 761440 7.40.6-2 Bug #761440 {Done: Jay Berkenbilt } [libvips-tools] libvips-tools: error - vips: unknown action "dzsave" No longer marked as found in versions vips/7.40.6-2. > fixed 704055 0.55-1 Bug #704055 {Done: Florian Schlichting } [libawl-php] libawl-php: Session.php calls private attribute 'EMail::To' in line 695, missing accessor in EMail.php Marked as fixed in versions awl/0.55-1. > notfixed 760633 0.0.20-1 Bug #760633 {Done: Dmitry Smirnov } [src:libgit2-glib] libgit2-glib: Please upload to unstable No longer marked as fixed in versions src:libgit2-glib/0.0.20-1. > fixed 760633 0.0.20-1 Bug #760633 {Done: Dmitry Smirnov } [src:libgit2-glib] libgit2-glib: Please upload to unstable Marked as fixed in versions libgit2-glib/0.0.20-1. > notfound 751958 3.6.1-1 Bug #751958 {Done: Steven McDonald } [puppet-common] puppet-common: Unnecessary versioned dependency on sysv-rc No longer marked as found in versions puppet/3.6.1-1. > found 751958 2.7.23-1 Bug #751958 {Done: Steven McDonald } [puppet-common] puppet-common: Unnecessary versioned dependency on sysv-rc There is no source info for the package 'puppet-common' at version '2.7.23-1' with architecture '' Unable to make a source version for version '2.7.23-1' Marked as found in versions 2.7.23-1. > notfound 746786 4.8.3-2 Bug #746786 {Done: Matthias Klose } [libgcj14] libgcj14:amd64: adequate reports broken symlink when upgrading libgcj14 No longer marked as found in versions gcc-4.8/4.8.3-2. > notfixed 743800 mia-viewit-dbg/1.0.1-1 Bug #743800 {Done: Gert Wollny } [mia-viewit-dbg] mia-viewit-dbg: Typo in package description: "vor" The source mia-viewit-dbg and version 1.0.1-1 do not appear to match any binary packages No longer marked as fixed in versions mia-viewit-dbg/1.0.1-1. > fixed 743800 1.0.1-1 Bug #743800 {Done: Gert Wollny } [mia-viewit-dbg] mia-viewit-dbg: Typo in package description: "vor" Marked as fixed in versions miaviewit/1.0.1-1. > notfixed 745960 0.21.1 Bug #745960 {Done: Russell Sim } [src:libgit2] libgit2: Please upload to unstable The source 'libgit2' and version '0.21.1' do not appear to match any binary packages No longer marked as fixed in versions 0.21.1. > fixed 745960 0.21.1-1 Bug #745960 {Done: Russell Sim } [src:libgit2] libgit2: Please upload to unstable Marked as fixed in versions libgit2/0.21.1-1. > reassign 759336 lowmem Bug #759336 {Done: Christian Perrier } [debian-installer] linux-i386 lowmem install: anna fails with ENOSPC Bug reassigned from package 'debian-installer' to 'lowmem'. No longer marked as found in versions debian-installer/20140802. No longer marked as fixed in versions lowmem/1.41. > fixed 759336 1.41 Bug #759336 {Done: Christian Perrier } [lowmem] linux-i386 lowmem install: anna fails with ENOSPC Marked as fixed in versions lowmem/1.41. > reassign 676546 src:libinfinity Bug #676546 {Done: Philipp Kern } [gobby-0.5] crashes after a random amount of time Bug reassigned from package 'gobby-0.5' to 'src:libinfinity'. No longer marked as found in versions gobby-infinote/0.4.94-4. No longer marked as fixed in versions 0.6.1-1. > fixed 676546 0.6.1-1 Bug #676546 {Done: Philipp Kern } [src:libinfinity] crashes after a random amount of time Marked as fixed in versions libinfinity/0.6.1-1. > affects 676546 gobby-0.5 Bug #676546 {Done: Philipp Kern } [src:libinfinity] crashes after a random amount of time Added indication that 676546 affects gobby-0.5 > found 676546 gobby-infinote/0.4.94-4 Bug #676546 {Done: Philipp Kern } [src:libinfinity] crashes after a random amount of time Marked as found in versions gobby-infinote/0.4.94-4. > fixed 723483 5.1.5-7 Bug #723483 {Done: Enrico Tassi } [lua5.1] lua5.1 link with -L/usr/lib Bug #723484 {Done: Enrico Tassi } [lua5.1] lua-bitop link with -L/usr/lib Bug #723486 {Done: Enrico Tassi } [lua5.1] lua-cyrussasl link with -L/usr/lib Bug #723488 {Done: Enrico Tassi } [lua5.1] lua-expat link with -L/usr/lib Bug #723489 {Done: Enrico Tassi } [lua5.1] lua-filesystem link with -L/usr/lib Bug #723490 {Done: Enrico Tassi } [lua5.1] lua-ldap link with -L/usr/lib Bug #723491 {Done: Enrico Tassi } [lua5.1] lua-rexlib link with -L/usr/lib Bug #723492 {Done: Enrico Tassi } [lua5.1] lua-sql link with -L/usr/lib Bug #723493 {Done: Enrico Tassi } [lua5.1] lua-zlib link with -L/usr/lib Marked as fixed in versions lua5.1/5.1.5-7. Marked as fixed in versions lua5.1/5.1.5-7. Marked as fixed in versions lua5.1/5.1.5-7. Marked as fixed in versions lua5.1/5.1.5-7. Marked as fixed in versions lua5.1/5.1.5-7. Marked as fixed in versions lua5.1/5.1.5-7. Marked as fixed in versions lua5.1/5.1.5-7. Marked as fixed in versions lua5.1/5.1.5-7. Marked as fixed in versions lua5.1/5.1.5-7. > reassign 756845 ruby-jekyll-sass-converter Bug #756845 {Done: Youhei SASAKI } [jekyll] jekyll: uninitialized constant Jekyll::Converters::Scss Bug reassigned from package 'jekyll' to 'ruby-jekyll-sass-converter'. No longer marked as found in versions jekyll/2.0.3+dfsg-1. No longer marked as fixed in versions ruby-jekyll-sass-converter/1.0.0-2. > fixed 756845 1.0.0-2 Bug #756845 {Done: Youhei SASAKI } [ruby-jekyll-sass-converter] jekyll: uninitialized constant Jekyll::Converters::Scss Marked as fixed in versions ruby-jekyll-sass-converter/1.0.0-2. > notfixed 728842 1.9.1-2.1 Bug #728842 {Done: Antoine } [libtag1c2a] libtag1c2a: tag display messed up with mpd clients No longer marked as fixed in versions libtag1c2a/1.9.1-2.1. > fixed 728842 1.9.1-2.1 Bug #728842 {Done: Antoine } [libtag1c2a] libtag1c2a: tag display messed up with mpd clients Marked as fixed in versions taglib/1.9.1-2.1. > notfixed 754348 20140529-1 Bug #754348 {Done: Didier 'OdyX' Raboud } [usb-modeswitch-data] [usb-modeswitch] The catch-all udev rule for Huawei devices does not work for my E1800 stick Bug #754499 {Done: Didier 'OdyX' Raboud } [usb-modeswitch-data] usb-modeswitch-data: Broken rule for Huawei E3272 (12d1:1f01) Bug #754912 {Done: Didier 'OdyX' Raboud } [usb-modeswitch-data] modemmanager: HUAWEI E3276 disappear in Network-Manager since the update 1.0.0-5+b1 -> 1.2.0-1 No longer marked as fixed in versions 20140529-1. No longer marked as fixed in versions 20140529-1. No longer marked as fixed in versions 20140529-1. > notfound 756551 208-6 Bug #756551 {Done: Michael Biebl } [systemd] systemd-nspawn: Host and machine ids are equal - refusing to link journals No longer marked as found in versions systemd/208-6. > notfixed 752945 0.4.4-2 Bug #752945 {Done: Michael Tautschnig } [oasis] oasis: FTBFS - 2 test failures No longer marked as fixed in versions 0.4.4-2. > reassign 756815 ruby2.1 Bug #756815 {Done: Antonio Terceiro } [ruby] ruby: missing man pages for testrb, rdoc, gem Bug reassigned from package 'ruby' to 'ruby2.1'. No longer marked as found in versions ruby-defaults/1:2.1.0.1. No longer marked as fixed in versions ruby2.1/2.1.2-3. > fixed 756815 2.1.2-3 Bug #756815 {Done: Antonio Terceiro } [ruby2.1] ruby: missing man pages for testrb, rdoc, gem Marked as fixed in versions ruby2.1/2.1.2-3. > notfixed 722138 0.7.0-1 Bug #722138 {Done: Diane Trout } [kde-telepathy-minimal] [kde-telepathy-minimal] Missing Depends on kde-telepathy-desktop-applets There is no source info for the package 'kde-telepathy-minimal' at version '0.7.0-1' with architecture '' Unable to make a source version for version '0.7.0-1' No longer marked as fixed in versions 0.7.0-1. > fixed 722138 0.7.0 Bug #722138 {Done: Diane Trout } [kde-telepathy-minimal] [kde-telepathy-minimal] Missing Depends on kde-telepathy-desktop-applets Marked as fixed in versions meta-kde-telepathy/0.7.0. > notfixed 741584 3.16~rc-1~exp1 Bug #741584 {Done: Ben Hutchings } [src:linux] linux-image-3.13-1-amd64: Thinkpad T440p: fails to boot with kernel 3.13 The source 'linux' and version '3.16~rc-1~exp1' do not appear to match any binary packages No longer marked as fixed in versions 3.16~rc-1~exp1. > fixed 741584 3.16~rc5-1~exp1 Bug #741584 {Done: Ben Hutchings } [src:linux] linux-image-3.13-1-amd64: Thinkpad T440p: fails to boot with kernel 3.13 Marked as fixed in versions linux/3.16~rc5-1~exp1. > notfixed 609859 1.50 Bug #609859 {Done: "Torrance, Douglas" } [wmbubble] wmbubble: 10x increase in CPU usage There is no source info for the package 'wmbubble' at version '1.50' with architecture '' Unable to make a source version for version '1.50' No longer marked as fixed in versions 1.50. > fixed 609859 1.50-1 Bug #609859 {Done: "Torrance, Douglas" } [wmbubble] wmbubble: 10x increase in CPU usage Marked as fixed in versions wmbubble/1.50-1. > notfixed 481443 1.50 Bug #481443 {Done: "Torrance, Douglas" } [wmbubble] duck graphic problem There is no source info for the package 'wmbubble' at version '1.50' with architecture '' Unable to make a source version for version '1.50' No longer marked as fixed in versions 1.50. > fixed 481443 1.50-1 Bug #481443 {Done: "Torrance, Douglas" } [wmbubble] duck graphic problem Marked as fixed in versions wmbubble/1.50-1. > notfixed 734939 2014.20140513-1 Bug #734939 {Done: Norbert Preining } [texlive-binaries] texlive-binaries: synctex view with -x crashes consistently There is no source info for the package 'texlive-binaries' at version '2014.20140513-1' with architecture '' Unable to make a source version for version '2014.20140513-1' No longer marked as fixed in versions 2014.20140513-1. > fixed 734939 2014.20140512.33982-1 Bug #734939 {Done: Norbert Preining } [texlive-binaries] texlive-binaries: synctex view with -x crashes consistently Marked as fixed in versions texlive-bin/2014.20140512.33982-1. > fixed 660906 1:3.8.3-1 Bug #660906 {Done: althaser } [gnome-control-center] [gnome-control-center] corrupt linked list or segfault when changing selection in alert sounds list box Marked as fixed in versions gnome-control-center/1:3.8.3-1. > notfixed 688159 3.4.2-1 Bug #688159 {Done: althaser } [gnome-shell] power down on a laptop is really awkward No longer marked as fixed in versions gnome-shell/3.4.2-1. > fixed 688159 3.4.2-2 Bug #688159 {Done: althaser } [gnome-shell] power down on a laptop is really awkward Marked as fixed in versions gnome-shell/3.4.2-2. > fixed 693152 3.8.4-1 Bug #693152 {Done: althaser } [gnome-shell] gnome-shell: Wrong Gnome-shell setting after system reboot Marked as fixed in versions gnome-shell/3.8.4-1. > fixed 659318 3.8.4-1 Bug #659318 {Done: Matteo Settenvini } [gnome-shell] gnome-shell: Can not open system setting from the option in the right-top corner popup Marked as fixed in versions gnome-shell/3.8.4-1. > notfixed 685804 3.4.2-1 Bug #685804 {Done: althaser } [gnome-shell] gnome-shell crash No longer marked as fixed in versions gnome-shell/3.4.2-1. > fixed 685804 3.4.2-2 Bug #685804 {Done: althaser } [gnome-shell] gnome-shell crash Marked as fixed in versions gnome-shell/3.4.2-2. > notfound 726872 3.8.4-5 Bug #726872 {Done: althaser } [gnome-shell] Lock screen does nothing No longer marked as found in versions gnome-shell/3.8.4-5. > thanks Stopping processing here. Please contact me if you need assistance. -- 389270: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=389270 469678: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=469678 481443: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=481443 488312: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=488312 495261: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=495261 532043: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=532043 532050: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=532050 534817: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=534817 563014: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=563014 569909: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=569909 572993: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=572993 580396: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=580396 581660: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=581660 609859: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=609859 641469: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=641469 659318: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=659318 660021: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=660021 660906: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=660906 676546: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=676546 684868: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=684868 685804: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=685804 688159: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=688159 693152: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=693152 704055: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=704055 705380: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=705380 722011: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=722011 722138: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=722138 723483: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=723483 723484: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=723484 723486: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=723486 723488: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=723488 723489: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=723489 723490: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=723490 723491: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=723491 723492: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=723492 723493: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=723493 726437: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=726437 726872: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=726872 728430: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=728430 728842: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=728842 730742: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=730742 734939: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=734939 737876: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=737876 740737: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=740737 741006: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=741006 741584: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=741584 742898: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=742898 743800: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=743800 744453: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=744453 744590: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=744590 745960: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=745960 746435: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=746435 746786: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=746786 751958: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=751958 752945: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=752945 753612: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=753612 754348: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=754348 754499: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=754499 754912: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=754912 755724: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=755724 756266: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756266 756407: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756407 756515: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756515 756551: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756551 756815: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756815 756845: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756845 759336: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=759336 760633: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=760633 761440: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=761440 762104: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=762104 765176: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=765176 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From acastillo at minamb.gob.ve Sun Nov 2 10:26:23 2014 From: acastillo at minamb.gob.ve (Glenn Taylor) Date: Sun, 02 Nov 2014 12:26:23 +0200 Subject: [Debian-med-packaging] Good Day To You Message-ID: <20141102102502.7629A2F0611D@mail.minamb.gob.ve> Please find attached letter and do get back to me. Thanks, Glenn -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: GLENN TAYLOR.docx Type: application/octet-stream Size: 13786 bytes Desc: not available URL: From info at nationalhomefinance.com Sun Nov 2 20:51:53 2014 From: info at nationalhomefinance.com (National Home Finance) Date: Sun, 02 Nov 2014 21:51:53 +0100 Subject: [Debian-med-packaging] god dag Message-ID: <20141102215153.199062kzjfvx7yww@webmail.eutis.cz> god dag, F? et l?n p? 3% b?de p? kort og lang sikt. National Hjem Finance er en global utl?n gruppe, etablert for ? m?te behovene til ?konomisk deprimerte klienter krav. Vi arbeider alle typer l?n. Informasjonen nedenfor for applikasjon. Fullt navn: kj?nn: land: Bel?pet som trengs: varighet: m?l: Vi trenger for l?n behandling denne informasjonen. Vennlig hilsen, Filomena Salud. From acastillo at minamb.gob.ve Sun Nov 2 12:46:16 2014 From: acastillo at minamb.gob.ve (Glenn Taylor) Date: Sun, 02 Nov 2014 14:46:16 +0200 Subject: [Debian-med-packaging] Can I Trust You On This Message-ID: <20141102124528.64BC12F23CD0@mail.minamb.gob.ve> Please find attached letter and do get back to me. Thanks, Glenn -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: GLENN TAYLOR.docx Type: application/octet-stream Size: 13786 bytes Desc: not available URL: From owner at bugs.debian.org Mon Nov 3 00:34:59 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Mon, 03 Nov 2014 00:34:59 +0000 Subject: [Debian-med-packaging] Processed: reassign 696267 to gcc-4.8, fixed 696267 in 4.8.1-7, found 696267 in gcc-4.7/4.7.2-12, closing 731695 ... References: <1414974618-696-bts-anbe@debian.org> Message-ID: Processing commands for control at bugs.debian.org: > # bts housekeeping: > # fixup versioning of fixed bugs that the bts considers to be not fixed > # reassign+affects bugs fixed in other packages > # unreproducible-or-not-a-bug must not be closed with a version, especially not the reported one (or a fake one) > # bts does not understand fixed-in-binNMU > # > reassign 696267 gcc-4.8 Bug #696267 {Done: Matthias Klose } [gcc-4.7] [gcc-4.7] gcc-4.7: libgcc2.c includes limits.h Bug reassigned from package 'gcc-4.7' to 'gcc-4.8'. No longer marked as found in versions gcc-4.7/4.7.2-12. No longer marked as fixed in versions gcc-4.8/4.8.1-7. > fixed 696267 4.8.1-7 Bug #696267 {Done: Matthias Klose } [gcc-4.8] [gcc-4.7] gcc-4.7: libgcc2.c includes limits.h Marked as fixed in versions gcc-4.8/4.8.1-7. > found 696267 gcc-4.7/4.7.2-12 Bug #696267 {Done: Matthias Klose } [gcc-4.8] [gcc-4.7] gcc-4.7: libgcc2.c includes limits.h Marked as found in versions gcc-4.7/4.7.2-12. > close 731695 Bug #731695 [pearpc] pearpc: build-depends on libsvga1-dev, which was removed from testing Marked Bug as done > tags 731695 + sid Bug #731695 {Done: Andreas Beckmann } [pearpc] pearpc: build-depends on libsvga1-dev, which was removed from testing Added tag(s) sid. > notfixed 651626 0.4.0-5 Bug #651626 [src:pearpc] pearpc: FTBFS(kfreebsd-amd64):'MAP_32BIT' was not declared in this scope No longer marked as fixed in versions pearpc/0.4.0-5. > reassign 717989 python-ase Bug #717989 {Done: Reiner Herrmann } [python-ase,silversearcher-ag] python-ase,silversearcher-ag: error when trying to install together Bug reassigned from package 'python-ase,silversearcher-ag' to 'python-ase'. No longer marked as found in versions silversearcher-ag/0.19.2-1, silversearcher-ag/0.18.1+20131108-1, silversearcher-ag/0.26.0-1, silversearcher-ag/0.15+20130830-1, python-ase/3.6.0.2515-1.1, and silversearcher-ag/0.15~pre+20130512-1. No longer marked as fixed in versions python-ase/3.8.1.3440-0.1. > fixed 717989 3.8.1.3440-0.1 Bug #717989 {Done: Reiner Herrmann } [python-ase] python-ase,silversearcher-ag: error when trying to install together Marked as fixed in versions python-ase/3.8.1.3440-0.1. > affects 717989 + silversearcher-ag Bug #717989 {Done: Reiner Herrmann } [python-ase] python-ase,silversearcher-ag: error when trying to install together Added indication that 717989 affects silversearcher-ag > found 717989 3.6.0.2515-1.1 Bug #717989 {Done: Reiner Herrmann } [python-ase] python-ase,silversearcher-ag: error when trying to install together Marked as found in versions python-ase/3.6.0.2515-1.1. > notfixed 488312 1:2.14.2-1 Bug #488312 {Done: Andreas Henriksson } [mount] segfaults when create_mtab can't determine the fsname Bug #532043 {Done: Andreas Henriksson } [mount] Debootstrap segfault during installation : testing i386 netinstall Bug #532050 {Done: Andreas Henriksson } [mount] deboostrap segfault at mount There is no source info for the package 'mount' at version '1:2.14.2-1' with architecture '' Unable to make a source version for version '1:2.14.2-1' No longer marked as fixed in versions 1:2.14.2-1. No longer marked as fixed in versions 1:2.14.2-1. No longer marked as fixed in versions 1:2.14.2-1. > fixed 488312 2.14.2-1 Bug #488312 {Done: Andreas Henriksson } [mount] segfaults when create_mtab can't determine the fsname Bug #532043 {Done: Andreas Henriksson } [mount] Debootstrap segfault during installation : testing i386 netinstall Bug #532050 {Done: Andreas Henriksson } [mount] deboostrap segfault at mount There is no source info for the package 'mount' at version '2.14.2-1' with architecture '' Unable to make a source version for version '2.14.2-1' Marked as fixed in versions 2.14.2-1. Marked as fixed in versions 2.14.2-1. Marked as fixed in versions 2.14.2-1. > notfixed 684868 1:1.2.2-1 Bug #684868 {Done: Alexander Wirt } [conntrackd] conntrackd: Conntrackd issue in commit operation There is no source info for the package 'conntrackd' at version '1:1.2.2-1' with architecture '' Unable to make a source version for version '1:1.2.2-1' No longer marked as fixed in versions 1:1.2.2-1. > fixed 684868 1:1.4.1-1 Bug #684868 {Done: Alexander Wirt } [conntrackd] conntrackd: Conntrackd issue in commit operation Marked as fixed in versions conntrack/1:1.4.1-1. > fixed 726872 3.10.1-1 Bug #726872 {Done: althaser } [gnome-shell] Lock screen does nothing Marked as fixed in versions gnome-shell/3.10.1-1. > reassign 685241 lxde Bug #685241 {Done: Andriy Grytsenko } [lxde,task-lxde-desktop] lxde, task-lxde-desktop: please add a PDF reader to recommends Bug reassigned from package 'lxde,task-lxde-desktop' to 'lxde'. No longer marked as found in versions lxde-metapackages/4+nmu1 and tasksel/3.11. No longer marked as fixed in versions lxde-metapackages/5. > fixed 685241 5 Bug #685241 {Done: Andriy Grytsenko } [lxde] lxde, task-lxde-desktop: please add a PDF reader to recommends Marked as fixed in versions lxde-metapackages/5. > found 685241 4+nmu1 Bug #685241 {Done: Andriy Grytsenko } [lxde] lxde, task-lxde-desktop: please add a PDF reader to recommends Marked as found in versions lxde-metapackages/4+nmu1. > fixed 724600 1.3.5-1 Bug #724600 {Done: Osamu Aoki } [ibus-table-latex] update package version dependency Marked as fixed in versions ibus-table-others/1.3.5-1. > reassign 742172 src:mariadb-10.0 Bug #742172 {Done: Otto Kek?l?inen } [libmariadbclient-dev] "mysql_config --libs" doesn't list all required libs Bug reassigned from package 'libmariadbclient-dev' to 'src:mariadb-10.0'. No longer marked as found in versions mariadb-5.5/5.5.36-1. No longer marked as fixed in versions mariadb-10.0/10.0.14-2. > fixed 742172 10.0.14-2 Bug #742172 {Done: Otto Kek?l?inen } [src:mariadb-10.0] "mysql_config --libs" doesn't list all required libs Marked as fixed in versions mariadb-10.0/10.0.14-2. > reassign 739452 src:mariadb-10.0 Bug #739452 {Done: Otto Kek?l?inen } [libmariadbclient18] libmariadbclient18: arch-dependent files in "Multi-Arch: same" package Bug reassigned from package 'libmariadbclient18' to 'src:mariadb-10.0'. No longer marked as found in versions mariadb-5.5/5.5.35-1. No longer marked as fixed in versions mariadb-10.0/10.0.14-2. > fixed 739452 10.0.14-2 Bug #739452 {Done: Otto Kek?l?inen } [src:mariadb-10.0] libmariadbclient18: arch-dependent files in "Multi-Arch: same" package Marked as fixed in versions mariadb-10.0/10.0.14-2. > reassign 693905 squid3 Bug #693905 {Done: Luigi Gangitano } [squid] [squid] Unrecognized options enable-underscores Bug reassigned from package 'squid' to 'squid3'. No longer marked as found in versions squid/2.7.STABLE9-2.1. No longer marked as fixed in versions squid3/3.4.8-1. > fixed 693905 3.4.8-1 Bug #693905 {Done: Luigi Gangitano } [squid3] [squid] Unrecognized options enable-underscores Marked as fixed in versions squid3/3.4.8-1. > affects 693905 squid Bug #693905 {Done: Luigi Gangitano } [squid3] [squid] Unrecognized options enable-underscores Added indication that 693905 affects squid > found 693905 squid/2.7.STABLE9-2.1 Bug #693905 {Done: Luigi Gangitano } [squid3] [squid] Unrecognized options enable-underscores Marked as found in versions squid/2.7.STABLE9-2.1. > notfound 756133 2.1+dfsg-1 Bug #756133 {Done: Mitsuya Shibata } [qemu-user-static] qemu-user-static: fails to create rootfs with qemu-debootstrap for s390x No longer marked as found in versions qemu/2.1+dfsg-1. > fixed 759090 1.81.00.dfsg-1 Bug #759090 {Done: Olly Betts } [src:psychopy] psychopy: Please update to use wxpython3.0 Marked as fixed in versions psychopy/1.81.00.dfsg-1. > fixed 718154 1.81.00.dfsg-1 Bug #718154 {Done: Olly Betts } [src:psychopy] psychopy: FTBFS: Tests failed Marked as fixed in versions psychopy/1.81.00.dfsg-1. > found 763691 1.6.5+dfsg.1-1 Bug #763691 {Done: Andreas Barth } [cdo] cdo FTBFS on ppc64el Marked as found in versions cdo/1.6.5+dfsg.1-1 and reopened. > fixed 482989 3.0.0-1 Bug #482989 {Done: Pedro Beja } [evince] evince: Customized toolbar is not shown in full-screen mode Marked as fixed in versions evince/3.0.0-1. > notfixed 482989 3.4.0-3.1 Bug #482989 {Done: Pedro Beja } [evince] evince: Customized toolbar is not shown in full-screen mode No longer marked as fixed in versions 3.4.0-3.1. > notfixed 466641 3.4.0-3.1 Bug #466641 {Done: Pedro Beja } [evince] evince: Does not display .odp documents correctly. No longer marked as fixed in versions 3.4.0-3.1. > fixed 466641 3.0.0-1 Bug #466641 {Done: Pedro Beja } [evince] evince: Does not display .odp documents correctly. Marked as fixed in versions evince/3.0.0-1. > notfixed 461499 2.30.3-2+squeeze1 Bug #461499 {Done: Pedro Beja } [evince] No information about missing fonts and possible errors in display andor printing No longer marked as fixed in versions 2.30.3-2+squeeze1. > # probably > fixed 461499 3.8.0-1 Bug #461499 {Done: Pedro Beja } [evince] No information about missing fonts and possible errors in display andor printing Marked as fixed in versions evince/3.8.0-1. > notfixed 444857 2.30.3-2+squeeze1 Bug #444857 {Done: Pedro Beja } [evince] Undocumented command-line switches (options). No longer marked as fixed in versions 2.30.3-2+squeeze1. > # probably, maybe already 3.2.0 > fixed 444857 3.4.0-1 Bug #444857 {Done: Pedro Beja } [evince] Undocumented command-line switches (options). Marked as fixed in versions evince/3.4.0-1. > notfixed 568148 3.4.0-3.1 Bug #568148 {Done: Pedro Beja } [evince] evince: Attempting to view TIF file causes core dump on corrupted file No longer marked as fixed in versions 3.4.0-3.1. > fixed 568148 3.0.0-1 Bug #568148 {Done: Pedro Beja } [evince] evince: Attempting to view TIF file causes core dump on corrupted file Marked as fixed in versions evince/3.0.0-1. > reassign 738242 src:plplot Bug #738242 {Done: Andrew Ross } [plplot11-driver-gd] plplot11-driver-gd: Please replace ttf-freefont by fonts-freefont-ttf in package dependencies Bug reassigned from package 'plplot11-driver-gd' to 'src:plplot'. Ignoring request to alter found versions of bug #738242 to the same values previously set No longer marked as fixed in versions 5.10.0-0.1. > fixed 738242 5.10.0-0.1 Bug #738242 {Done: Andrew Ross } [src:plplot] plplot11-driver-gd: Please replace ttf-freefont by fonts-freefont-ttf in package dependencies Marked as fixed in versions plplot/5.10.0-0.1. > reassign 719799 src:plplot Bug #719799 {Done: Thibaut Paumard } [libplplot11] libplplot: Error in exponent label placement when using plslabelfunc Bug reassigned from package 'libplplot11' to 'src:plplot'. No longer marked as found in versions plplot/5.9.9-5. No longer marked as fixed in versions plplot/5.10.0-0.1. > fixed 719799 5.10.0-0.1 Bug #719799 {Done: Thibaut Paumard } [src:plplot] libplplot: Error in exponent label placement when using plslabelfunc Marked as fixed in versions plplot/5.10.0-0.1. > found 719799 5.9.9-5 Bug #719799 {Done: Thibaut Paumard } [src:plplot] libplplot: Error in exponent label placement when using plslabelfunc Marked as found in versions plplot/5.9.9-5. > notfixed 746839 1.0.3-4+b2 Bug #746839 {Done: An?bal Monsalve Salazar } [src:etsf-io] etsf-io: ftbfs with GCC-4.9 The source 'etsf-io' and version '1.0.3-4+b2' do not appear to match any binary packages No longer marked as fixed in versions 1.0.3-4+b2. > notfixed 701274 1.0.3-4+b2 Bug #701274 {Done: An?bal Monsalve Salazar } [src:etsf-io] etsf-io: ftbfs with GCC-4.8 Bug #713232 {Done: An?bal Monsalve Salazar } [src:etsf-io] etsf-io: FTBFS: configure: error: "No 'NetCDF' library found." The source 'etsf-io' and version '1.0.3-4+b2' do not appear to match any binary packages No longer marked as fixed in versions 1.0.3-4+b2. No longer marked as fixed in versions 1.0.3-4+b2. > notfixed 475805 3.3.6 Bug #475805 {Done: Jose M Calhariz } [amanda-server] amanda-server: Should not write to tape of amdump is run as other than backup user There is no source info for the package 'amanda-server' at version '3.3.6' with architecture '' Unable to make a source version for version '3.3.6' No longer marked as fixed in versions 3.3.6. > notfixed 475805 amanda/1:3.3.6 Bug #475805 {Done: Jose M Calhariz } [amanda-server] amanda-server: Should not write to tape of amdump is run as other than backup user The source amanda and version 1:3.3.6 do not appear to match any binary packages No longer marked as fixed in versions amanda/1:3.3.6. > notfixed 475805 amanda/1:3.3.6-1+b1 Bug #475805 {Done: Jose M Calhariz } [amanda-server] amanda-server: Should not write to tape of amdump is run as other than backup user The source amanda and version 1:3.3.6-1+b1 do not appear to match any binary packages No longer marked as fixed in versions amanda/1:3.3.6-1+b1. > fixed 475805 1:3.3.6-1 Bug #475805 {Done: Jose M Calhariz } [amanda-server] amanda-server: Should not write to tape of amdump is run as other than backup user Marked as fixed in versions amanda/1:3.3.6-1. > notfound 757561 1.0.6 Bug #757561 {Done: David Kalnischkies } [src:apt] apt: use --no-install-recommends by default for "apt-get build-dep" No longer marked as found in versions apt/1.0.6. > reassign 748603 src:ktp-common-internals Bug #748603 {Done: Diane Trout } [kde-telepathy] [kde-telepathy] Version from sid not installable Bug reassigned from package 'kde-telepathy' to 'src:ktp-common-internals'. No longer marked as found in versions meta-kde-telepathy/0.8.1. No longer marked as fixed in versions 0.8.1-2. > fixed 748603 0.8.1-2 Bug #748603 {Done: Diane Trout } [src:ktp-common-internals] [kde-telepathy] Version from sid not installable Marked as fixed in versions ktp-common-internals/0.8.1-2. > found 748603 meta-kde-telepathy/0.8.1 Bug #748603 {Done: Diane Trout } [src:ktp-common-internals] [kde-telepathy] Version from sid not installable Marked as found in versions meta-kde-telepathy/0.8.1. > notfixed 187660 5.10 Bug #187660 {Done: Dariusz Dwornikowski } [linuxlogo] kernel timestamp overload There is no source info for the package 'linuxlogo' at version '5.10' with architecture '' Unable to make a source version for version '5.10' No longer marked as fixed in versions 5.10. > fixed 187660 5.10-1 Bug #187660 {Done: Dariusz Dwornikowski } [linuxlogo] kernel timestamp overload Marked as fixed in versions linuxlogo/5.10-1. > notfixed 437476 5.10 Bug #437476 {Done: Dariusz Dwornikowski } [linuxlogo] linuxlogo: not handling nostrip build option (policy 10.1) There is no source info for the package 'linuxlogo' at version '5.10' with architecture '' Unable to make a source version for version '5.10' No longer marked as fixed in versions 5.10. > fixed 437476 5.10-1 Bug #437476 {Done: Dariusz Dwornikowski } [linuxlogo] linuxlogo: not handling nostrip build option (policy 10.1) Marked as fixed in versions linuxlogo/5.10-1. > notfixed 576386 3.12.2-1 Bug #576386 {Done: Pedro Beja } [nautilus] nautilus: with --no-desktop and exit_with_last_window==false, a "quit" menu option is needed No longer marked as fixed in versions 3.12.2-1. > notfound 576386 3.12.2-1 Bug #576386 {Done: Pedro Beja } [nautilus] nautilus: with --no-desktop and exit_with_last_window==false, a "quit" menu option is needed No longer marked as found in versions nautilus/3.12.2-1. > notfixed 570314 3.12.2-1 Bug #570314 {Done: Pedro Beja } [nautilus] nautilus: --no-desktop should imply exit_with_last_window and !media_automount_open No longer marked as fixed in versions 3.12.2-1. > notfixed 658016 3.4.2-1+build1 Bug #658016 {Done: Pedro Beja } [nautilus] nautilus: moving with arrow keys, the selected file is hidden by a pink rectangle No longer marked as fixed in versions 3.4.2-1+build1. > fixed 647188 3.4.2-1 Bug #647188 {Done: Pedro Beja } [nautilus] nautilus crashes when deleting folder in tree sidebar Marked as fixed in versions nautilus/3.4.2-1. > notfixed 646386 3.4.2-1+build1 Bug #646386 {Done: Pedro Beja } [nautilus] nautilus: cut/copy/paste files does not work No longer marked as fixed in versions 3.4.2-1+build1. > fixed 646386 3.2.1-1 Bug #646386 {Done: Pedro Beja } [nautilus] nautilus: cut/copy/paste files does not work Marked as fixed in versions nautilus/3.2.1-1. > notfixed 565196 3.4.2-1+build1 Bug #565196 {Done: Pedro Beja } [nautilus] nautilus: ftp Unable to create socket: Invalid argument No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 519878 3.4.2-1+build1 Bug #519878 {Done: Pedro Beja } [nautilus] Nautilus fails to browse Windows shares No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 514867 3.4.2-1+build1 Bug #514867 {Done: Pedro Beja } [nautilus] nautilus No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 530013 3.4.2-1+build1 Bug #530013 {Done: Pedro Beja } [nautilus] nautilus: Changes background of current desktop when starting under KDE4 No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 529008 3.4.2-1+build1 Bug #529008 {Done: Pedro Beja } [nautilus] nautilus: mount as other user No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 528313 3.4.2-1+build1 Bug #528313 {Done: Pedro Beja } [nautilus] base: Right clicking on then selecting "properties" on an image file does something very strange! No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 527737 3.4.2-1+build1 Bug #527737 {Done: Pedro Beja } [nautilus] trash: does not show the deleted files No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 522582 3.4.2-1+build1 Bug #522582 {Done: Pedro Beja } [nautilus] Upgrading nautilus creates a bunch of unwanted folders in home No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 519970 3.4.2-1+build1 Bug #519970 {Done: Pedro Beja } [nautilus] Nautilus fails to browse SMB share with nautilus-cd-burner running No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 508672 3.4.2-1+build1 Bug #508672 {Done: Pedro Beja } [nautilus] nautilus: Generating video index on constantly changing file -> CPU load 100% No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 502449 3.4.2-1+build1 Bug #502449 {Done: Pedro Beja } [nautilus] Nautilus does not always refresh the location it is currently in No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 490126 3.4.2-1+build1 Bug #490126 {Done: Pedro Beja } [nautilus] nautilus: Cannot connect to webdisk No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 607733 3.4.2-1+build1 Bug #607733 {Done: Pedro Beja } [nautilus] nautilus shows wrong size in directory Properties No longer marked as fixed in versions 3.4.2-1+build1. > fixed 560998 2.28.4-3 Bug #560998 {Done: Pedro Beja } [nautilus] nautilus segmentation fault at running of non-root user Marked as fixed in versions nautilus/2.28.4-3. > notfixed 560998 3.4.2-1+build1 Bug #560998 {Done: Pedro Beja } [nautilus] nautilus segmentation fault at running of non-root user No longer marked as fixed in versions 3.4.2-1+build1. > notfixed 521423 3.4.2-1+build1 Bug #521423 {Done: Pedro Beja } [nautilus] [nautilus] nautilus freeze asking authentication No longer marked as fixed in versions 3.4.2-1+build1. > reassign 745906 gcc-4.9 Bug #745906 {Done: Matthias Klose } [gcc-snapshot] gcc-snapshot: FTBFS on hppa: cp: cannot stat 'debian/gcc-ar.1' Bug reassigned from package 'gcc-snapshot' to 'gcc-4.9'. No longer marked as found in versions gcc-snapshot/20140423-1. No longer marked as fixed in versions gcc-4.9/4.9.0-6. > fixed 745906 4.9.0-6 Bug #745906 {Done: Matthias Klose } [gcc-4.9] gcc-snapshot: FTBFS on hppa: cp: cannot stat 'debian/gcc-ar.1' Marked as fixed in versions gcc-4.9/4.9.0-6. > affects 745906 + gcc-snapshot Bug #745906 {Done: Matthias Klose } [gcc-4.9] gcc-snapshot: FTBFS on hppa: cp: cannot stat 'debian/gcc-ar.1' Added indication that 745906 affects gcc-snapshot > reassign 745712 src:xbmc-pvr-addons Bug #745712 {Done: Balint Reczey } [vdr-plugin-vnsiserver] VDR: "really binary incompatibility: vnsiserver3." Bug reassigned from package 'vdr-plugin-vnsiserver' to 'src:xbmc-pvr-addons'. No longer marked as found in versions xbmc-pvr-addons/12.0+79+ge1c3fb1+dfsg1-3. No longer marked as fixed in versions xbmc-pvr-addons/12.0+79+ge1c3fb1+dfsg1-4. > fixed 745712 12.0+79+ge1c3fb1+dfsg1-4 Bug #745712 {Done: Balint Reczey } [src:xbmc-pvr-addons] VDR: "really binary incompatibility: vnsiserver3." Marked as fixed in versions xbmc-pvr-addons/12.0+79+ge1c3fb1+dfsg1-4. > found 745712 12.0+79+ge1c3fb1+dfsg1-3 Bug #745712 {Done: Balint Reczey } [src:xbmc-pvr-addons] VDR: "really binary incompatibility: vnsiserver3." Marked as found in versions xbmc-pvr-addons/12.0+79+ge1c3fb1+dfsg1-3. > reassign 696267 gcc-4.8 Bug #696267 {Done: Matthias Klose } [gcc-4.8] [gcc-4.7] gcc-4.7: libgcc2.c includes limits.h Ignoring request to reassign bug #696267 to the same package > fixed 696267 4.8.1-7 Bug #696267 {Done: Matthias Klose } [gcc-4.8] [gcc-4.7] gcc-4.7: libgcc2.c includes limits.h Ignoring request to alter fixed versions of bug #696267 to the same values previously set > found 696267 gcc-4.7/4.7.2-12 Bug #696267 {Done: Matthias Klose } [gcc-4.8] [gcc-4.7] gcc-4.7: libgcc2.c includes limits.h Ignoring request to alter found versions of bug #696267 to the same values previously set > reassign 697805 gcc-4.8 Bug #697805 {Done: Matthias Klose } [gcc-4.7] gcc-4.(7|8) FTBFS on non-ubuntu based derivatives that change output of lsb_release -is Bug reassigned from package 'gcc-4.7' to 'gcc-4.8'. No longer marked as found in versions gcc-4.7/4.7.2-4. No longer marked as fixed in versions gcc-4.8/4.8.2-6. > fixed 697805 4.8.2-6 Bug #697805 {Done: Matthias Klose } [gcc-4.8] gcc-4.(7|8) FTBFS on non-ubuntu based derivatives that change output of lsb_release -is Marked as fixed in versions gcc-4.8/4.8.2-6. > found 697805 gcc-4.7/4.7.2-4 Bug #697805 {Done: Matthias Klose } [gcc-4.8] gcc-4.(7|8) FTBFS on non-ubuntu based derivatives that change output of lsb_release -is Marked as found in versions gcc-4.7/4.7.2-4. > fixed 737212 1.2.2p3-1~bpo70+1 Bug #737212 {Done: Matt Taggart } [check-mk-agent] check-mk-agent: Please backport check-mk-agent 1.2.2p3-1 to wheezy-backports Marked as fixed in versions check-mk/1.2.2p3-1~bpo70+1. > notfixed 737212 737213 Bug #737212 {Done: Matt Taggart } [check-mk-agent] check-mk-agent: Please backport check-mk-agent 1.2.2p3-1 to wheezy-backports There is no source info for the package 'check-mk-agent' at version '737213' with architecture '' Unable to make a source version for version '737213' No longer marked as fixed in versions 737213. > fixed 737212 1.2.2p3-1 Bug #737212 {Done: Matt Taggart } [check-mk-agent] check-mk-agent: Please backport check-mk-agent 1.2.2p3-1 to wheezy-backports Marked as fixed in versions check-mk/1.2.2p3-1. > found 737212 1.1.12p7-1 Bug #737212 {Done: Matt Taggart } [check-mk-agent] check-mk-agent: Please backport check-mk-agent 1.2.2p3-1 to wheezy-backports Marked as found in versions check-mk/1.1.12p7-1. > reassign 690633 src:netbeans Bug #690633 {Done: tony mancill } [libnb-platform13-java] libnb-platform13-java: bashism in /bin/sh script Bug reassigned from package 'libnb-platform13-java' to 'src:netbeans'. No longer marked as found in versions netbeans/7.0.1+dfsg1-5. No longer marked as fixed in versions libnb-platform18-java/7.4+dfsg1-1. > fixed 690633 7.4+dfsg1-1 Bug #690633 {Done: tony mancill } [src:netbeans] libnb-platform13-java: bashism in /bin/sh script The source 'netbeans' and version '7.4+dfsg1-1' do not appear to match any binary packages Marked as fixed in versions netbeans/7.4+dfsg1-1. > found 690633 7.0.1+dfsg1-5 Bug #690633 {Done: tony mancill } [src:netbeans] libnb-platform13-java: bashism in /bin/sh script Marked as found in versions netbeans/7.0.1+dfsg1-5. > notfixed 734846 1.1.3-1 Bug #734846 {Done: Dario Minnucci } [php-net-imap] php-net-imap: Not possible to package new version 1.1.2 due to malformed sources. There is no source info for the package 'php-net-imap' at version '1.1.3-1' with architecture '' Unable to make a source version for version '1.1.3-1' No longer marked as fixed in versions 1.1.3-1. > fixed 734846 1:1.1.3-1 Bug #734846 {Done: Dario Minnucci } [php-net-imap] php-net-imap: Not possible to package new version 1.1.2 due to malformed sources. Marked as fixed in versions php-net-imap/1:1.1.3-1. > reassign 731726 src:protobuf-c Bug #731726 {Done: edmonds at debian.org (Robert S. Edmonds)} [libprotobuf-c0-dev] libprotobuf-c pkg-config .pc not installed Bug reassigned from package 'libprotobuf-c0-dev' to 'src:protobuf-c'. No longer marked as found in versions protobuf-c/0.15-1. No longer marked as fixed in versions protobuf-c/1.0.0~rc1-1. > fixed 731726 1.0.0~rc1-1 Bug #731726 {Done: edmonds at debian.org (Robert S. Edmonds)} [src:protobuf-c] libprotobuf-c pkg-config .pc not installed Marked as fixed in versions protobuf-c/1.0.0~rc1-1. > found 731726 0.15-1 Bug #731726 {Done: edmonds at debian.org (Robert S. Edmonds)} [src:protobuf-c] libprotobuf-c pkg-config .pc not installed Marked as found in versions protobuf-c/0.15-1. > found 722405 1.3.0-1 Bug #722405 {Done: Sebastian Eichelbaum } [openwalnut-qt4] openwalnut-qt4: Depend on fonts-liberation instead of ttf-liberation There is no source info for the package 'openwalnut-qt4' at version '1.3.0-1' with architecture '' Unable to make a source version for version '1.3.0-1' Marked as found in versions 1.3.0-1. > notfound 767561 strongswan-starter/5.1.1-1 Bug #767561 [pki-tools,strongswan-starter] pki-tools,strongswan-starter: error when trying to install together The source strongswan-starter and version 5.1.1-1 do not appear to match any binary packages No longer marked as found in versions strongswan-starter/5.1.1-1. > tags 767811 + jessie sid Bug #767811 [cl-acl-compat] cl-acl-compat: fails to install: /usr/sbin/register-common-lisp-source: not found Added tag(s) sid and jessie. > found 673972 6.1.23~dfsg-1 Bug #673972 [sympa] sympa: unowned directories after purge Marked as found in versions sympa/6.1.23~dfsg-1. > found 740324 1.1.10+git20130802-4.1 Bug #740324 [pacemaker] pacemaker: unowned directories after purge: /var/lib/heartbeat/{crm, blackbox, cib, cores, crm, lrm, pengine}/ Marked as found in versions pacemaker/1.1.10+git20130802-4.1. > found 766187 bcron-run/0.10-3 Bug #766187 [runit] runit: Fails to install runit after fresh install of jessie beta2 The source bcron-run and version 0.10-3 do not appear to match any binary packages Marked as found in versions bcron-run/0.10-3. > affects 767672 + nova-compute Bug #767672 [libvirt-daemon-system] libvirt-daemon-system: fails to purge: rmdir: failed to remove '/var/lib/libvirt/qemu/save': No such file or directory Added indication that 767672 affects nova-compute > found 656586 2.7-1.1 Bug #656586 [routino-www] fails to purge - rmdir: failed to remove '/var/lib/routino/data': No such file or directory Marked as found in versions routino/2.7-1.1. > affects 767689 + php-htmlpurifier Bug #767689 {Done: David Pr?vot } [dpkg] php-htmlpurifier: fails to install: dpkg-maintscript-helper: error: original symlink target is not an absolute path Bug #767460 {Done: David Pr?vot } [dpkg] php-htmlpurifier: Missing versioned dependency on dpkg Bug #767547 {Done: David Pr?vot } [dpkg] dpkg-maintscript-helper: error: original symlink target is not an absolute path Bug #767766 {Done: David Pr?vot } [dpkg] php-htmlpurifier: fails to install Ignoring request to set affects of bug 767689 to the same value previously set Ignoring request to set affects of bug 767460 to the same value previously set Ignoring request to set affects of bug 767547 to the same value previously set Ignoring request to set affects of bug 767766 to the same value previously set > severity 756691 serious Bug #756691 [liblog4cplus-dev] Fails to install in SID due to ovewrite of .so from library Severity set to 'serious' from 'important' > user debian-qa at lists.debian.org Setting user to debian-qa at lists.debian.org (was anbe at debian.org). > usertags 756691 piuparts There were no usertags set. Usertags are now: piuparts. > notfound 756691 1.0.4-1 Bug #756691 [liblog4cplus-dev] Fails to install in SID due to ovewrite of .so from library No longer marked as found in versions log4cplus/1.0.4-1. > found 756691 1.0.4-1.1 Bug #756691 [liblog4cplus-dev] Fails to install in SID due to ovewrite of .so from library Marked as found in versions log4cplus/1.0.4-1.1. > affects 767834 + xmorph Bug #767834 [libmorph] libmorph: fails to upgrade from 'wheezy' - trying to overwrite /usr/share/man/man1/morph.1.gz Added indication that 767834 affects xmorph > affects 767837 + icc-utils Bug #767837 [argyll] argyll: fails to upgrade from 'wheezy' - trying to overwrite /usr/share/man/man1/icclu.1.gz Added indication that 767837 affects icc-utils > usertags 766273 piuparts There were no usertags set. Usertags are now: piuparts. > affects 767838 + gnuradio-dev Bug #767838 [libvolk-dev] libvolk-dev: fails to upgrade from 'wheezy' - trying to overwrite /usr/lib/x86_64-linux-gnu/pkgconfig/volk.pc Added indication that 767838 affects gnuradio-dev > affects 767842 + redmine Bug #767842 [ruby-actionpack-action-caching] ruby-actionpack-action-caching: fails to upgrade from 'wheezy' - trying to overwrite /usr/lib/ruby/vendor_ruby/action_controller/caching/actions.rb Added indication that 767842 affects redmine > usertags 765066 piuparts There were no usertags set. Usertags are now: piuparts. > affects 767811 + cl-htmlgen Bug #767811 [cl-acl-compat] cl-acl-compat: fails to install: /usr/sbin/register-common-lisp-source: not found Added indication that 767811 affects cl-htmlgen > retitle 766362 libvirt-daemon-system: fails to install: Can't locate File/Path.pm in @INC Bug #766362 [libvirt-daemon-system] libvirt-daemon-system: fails to install Changed Bug title to 'libvirt-daemon-system: fails to install: Can't locate File/Path.pm in @INC' from 'libvirt-daemon-system: fails to install' > found 767672 1.2.10~rc1-1 Bug #767672 [libvirt-daemon-system] libvirt-daemon-system: fails to purge: rmdir: failed to remove '/var/lib/libvirt/qemu/save': No such file or directory Marked as found in versions libvirt/1.2.10~rc1-1. > affects 767672 + nova-compute Bug #767672 [libvirt-daemon-system] libvirt-daemon-system: fails to purge: rmdir: failed to remove '/var/lib/libvirt/qemu/save': No such file or directory Ignoring request to set affects of bug 767672 to the same value previously set > affects 767855 + critterding Bug #767855 [critterding-common] critterding-common: fails to upgrade from 'sid' - trying to overwrite /usr/share/critterding/pixmaps/cd.bmp Added indication that 767855 affects critterding > found 749994 4.0.3-1 Bug #749994 [tdiary-mode] tdiary-mode: fails to upgrade from wheezy Marked as found in versions tdiary-contrib/4.0.3-1. > usertags 759226 piuparts There were no usertags set. Usertags are now: piuparts. > severity 764974 serious Bug #764974 [ejabberd] "ejabberd: installation fails if /usr/share/doc aint available" Severity set to 'serious' from 'normal' > usertags 764974 piuparts There were no usertags set. Usertags are now: piuparts. > retitle 764974 ejabberd: postinst uses /usr/share/doc content (Policy 12.3) Bug #764974 [ejabberd] "ejabberd: installation fails if /usr/share/doc aint available" Changed Bug title to 'ejabberd: postinst uses /usr/share/doc content (Policy 12.3)' from '"ejabberd: installation fails if /usr/share/doc aint available"' > found 764974 14.07-2 Bug #764974 [ejabberd] ejabberd: postinst uses /usr/share/doc content (Policy 12.3) Marked as found in versions ejabberd/14.07-2. > reassign 766961 ftp.debian.org Bug #766961 [mapsembler2] RM: mapsembler2 [mips mipsel powerpc sparc] -- RoM; FTBFS Bug reassigned from package 'mapsembler2' to 'ftp.debian.org'. No longer marked as found in versions mapsembler2/2.2.3+dfsg-1. Ignoring request to alter fixed versions of bug #766961 to the same values previously set > thanks Stopping processing here. Please contact me if you need assistance. -- 187660: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=187660 437476: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=437476 444857: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=444857 461499: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=461499 466641: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=466641 475805: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=475805 482989: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=482989 488312: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=488312 490126: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=490126 502449: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=502449 508672: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=508672 514867: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=514867 519878: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=519878 519970: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=519970 521423: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=521423 522582: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=522582 527737: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=527737 528313: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=528313 529008: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=529008 530013: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=530013 532043: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=532043 532050: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=532050 560998: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=560998 565196: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=565196 568148: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=568148 570314: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=570314 576386: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=576386 607733: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=607733 646386: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=646386 647188: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=647188 651626: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=651626 656586: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=656586 658016: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=658016 673972: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=673972 684868: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=684868 685241: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=685241 690633: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=690633 693905: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=693905 696267: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=696267 697805: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=697805 701274: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=701274 713232: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=713232 717989: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=717989 718154: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=718154 719799: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=719799 722405: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=722405 724600: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=724600 726872: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=726872 731695: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=731695 731726: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=731726 734846: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=734846 737212: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=737212 738242: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=738242 739452: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=739452 740324: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=740324 742172: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=742172 745712: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=745712 745906: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=745906 746839: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=746839 748603: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=748603 749994: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=749994 756133: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756133 756691: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=756691 757561: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=757561 759090: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=759090 763691: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=763691 764974: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=764974 766187: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=766187 766362: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=766362 766961: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=766961 767460: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767460 767547: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767547 767561: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767561 767672: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767672 767689: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767689 767766: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767766 767811: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767811 767834: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767834 767837: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767837 767838: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767838 767842: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767842 767855: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767855 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From ftpmaster at ftp-master.debian.org Mon Nov 3 07:22:19 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Mon, 03 Nov 2014 07:22:19 +0000 Subject: [Debian-med-packaging] Bug#766961: Removed package(s) from unstable Message-ID: We believe that the bug you reported is now fixed; the following package(s) have been removed from unstable: mapsembler2 | 2.1.6+dfsg-1 | mips, mipsel, powerpc, sparc ------------------- Reason ------------------- RoM; FTBFS ---------------------------------------------- Note that the package(s) have simply been removed from the tag database and may (or may not) still be in the pool; this is not a bug. The package(s) will be physically removed automatically when no suite references them (and in the case of source, when no binary references it). Please also remember that the changes have been done on the master archive and will not propagate to any mirrors until the next dinstall run at the earliest. Packages are usually not removed from testing by hand. Testing tracks unstable and will automatically remove packages which were removed from unstable when removing them from testing causes no dependency problems. The release team can force a removal from testing if it is really needed, please contact them if this should be the case. Bugs which have been reported against this package are not automatically removed from the Bug Tracking System. Please check all open bugs and close them or re-assign them to another package if the removed package was superseded by another one. The version of this package that was in Debian prior to this removal can still be found using http://snapshot.debian.org/. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 766961 at bugs.debian.org. The full log for this bug can be viewed at https://bugs.debian.org/766961 This message was generated automatically; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmaster at ftp-master.debian.org. Debian distribution maintenance software pp. Luca Falavigna (the ftpmaster behind the curtain) From noreply at release.debian.org Mon Nov 3 16:39:17 2014 From: noreply at release.debian.org (Debian testing watch) Date: Mon, 03 Nov 2014 16:39:17 +0000 Subject: [Debian-med-packaging] last-align 490-1 MIGRATED to testing Message-ID: FYI: The status of the last-align source package in Debian's testing distribution has changed. Previous version: 475-1 Current version: 490-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Mon Nov 3 16:39:19 2014 From: noreply at release.debian.org (Debian testing watch) Date: Mon, 03 Nov 2014 16:39:19 +0000 Subject: [Debian-med-packaging] pvclust 1.3-0-1 MIGRATED to testing Message-ID: FYI: The status of the pvclust source package in Debian's testing distribution has changed. Previous version: 1.2-2-2 Current version: 1.3-0-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Mon Nov 3 16:39:18 2014 From: noreply at release.debian.org (Debian testing watch) Date: Mon, 03 Nov 2014 16:39:18 +0000 Subject: [Debian-med-packaging] mafft 7.205-1 MIGRATED to testing Message-ID: FYI: The status of the mafft source package in Debian's testing distribution has changed. Previous version: 7.187-1 Current version: 7.205-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From eunyoungkim at google.com Mon Nov 3 18:09:00 2014 From: eunyoungkim at google.com (Eunyoung Kim) Date: Mon, 03 Nov 2014 10:09:00 -0800 Subject: [Debian-med-packaging] ImageJ ports on samsam99.mtv.corp.google.com Message-ID: <20141103180900.8A2E1100B84@samsam99.mtv.corp.google.com> Port locks on samsam99.mtv.corp.google.com reached 141 From owner at bugs.debian.org Mon Nov 3 18:27:18 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Mon, 03 Nov 2014 18:27:18 +0000 Subject: [Debian-med-packaging] Processed: retitle 754791 to fusionforge-plugin-sysauthldap: fails to install: mv: cannot stat '/etc/gforge/httpd.conf.d/plugin-sysauthldap-secrets.inc.generated': No such file or directory ... References: <1415039180-3148-bts-anbe@debian.org> Message-ID: Processing commands for control at bugs.debian.org: > retitle 754791 fusionforge-plugin-sysauthldap: fails to install: mv: cannot stat '/etc/gforge/httpd.conf.d/plugin-sysauthldap-secrets.inc.generated': No such file or directory Bug #754791 [fusionforge-plugin-sysauthldap] fusionforge-plugin-sysauthldap: fails to install: mv: cannot stat '/etc/gforge/httpd.conf.d/plugin-sysauthldap- Changed Bug title to 'fusionforge-plugin-sysauthldap: fails to install: mv: cannot stat '/etc/gforge/httpd.conf.d/plugin-sysauthldap-secrets.inc.generated': No such file or directory' from 'fusionforge-plugin-sysauthldap: fails to install: mv: cannot stat '/etc/gforge/httpd.conf.d/plugin-sysauthldap-' > found 766187 git-daemon-run/1:2.1.1-1 Bug #766187 [runit] runit: Fails to install runit after fresh install of jessie beta2 The source git-daemon-run and version 1:2.1.1-1 do not appear to match any binary packages Marked as found in versions git-daemon-run/1:2.1.1-1. > affects 767690 + simple-tpm-pk11 Bug #767690 [trousers] trousers: fails to install: subprocess installed post-installation script returned error exit status 2 Added indication that 767690 affects simple-tpm-pk11 > affects 766308 + libguestfs0 Bug #766308 [mdadm] Fails to purge: /var/lib/dpkg/info/mdadm.postrm: 9: /usr/share/debconf/confmodule: DEBIAN_HAS_FRONTEND: parameter not set Added indication that 766308 affects libguestfs0 > affects 766362 + libvirt-bin Bug #766362 [libvirt-daemon-system] libvirt-daemon-system: fails to install: Can't locate File/Path.pm in @INC Added indication that 766362 affects libvirt-bin > found 660350 resolvconf/1.76 Bug #660350 [resolvconf] resolvconf "does not preserve comments (and whitespaces)" Marked as found in versions resolvconf/1.76. > found 765066 2.0.16-2 Bug #765066 {Done: Andreas Tille } [hhsuite] hhsuite 2.0.16-2 conflicts with hhsuite-data 2.0.16-1 Marked as found in versions hhsuite/2.0.16-2. > thanks Stopping processing here. Please contact me if you need assistance. -- 660350: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=660350 754791: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=754791 765066: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=765066 766187: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=766187 766308: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=766308 766362: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=766362 767690: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=767690 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From eunyoungkim at google.com Mon Nov 3 18:29:14 2014 From: eunyoungkim at google.com (Eunyoung Kim) Date: Mon, 03 Nov 2014 10:29:14 -0800 Subject: [Debian-med-packaging] ImageJ ports on samsam99.mtv.corp.google.com Message-ID: <20141103182914.4750D100B84@samsam99.mtv.corp.google.com> Port locks on samsam99.mtv.corp.google.com reached 141 From eunyoungkim at google.com Mon Nov 3 18:52:18 2014 From: eunyoungkim at google.com (Eunyoung Kim) Date: Mon, 03 Nov 2014 10:52:18 -0800 Subject: [Debian-med-packaging] ImageJ ports on samsam99.mtv.corp.google.com Message-ID: <20141103185218.866F2100B84@samsam99.mtv.corp.google.com> Port locks on samsam99.mtv.corp.google.com reached 155 From olivier.sallou at irisa.fr Tue Nov 4 08:21:47 2014 From: olivier.sallou at irisa.fr (Olivier Sallou) Date: Tue, 04 Nov 2014 09:21:47 +0100 Subject: [Debian-med-packaging] Bug#765285: removed on failed archs Message-ID: <54588C9B.3000800@irisa.fr> Waiting upstream fix on aotmic operations, a RM request has been sent to remove binaries from failing archs: #766961: RM: mapsembler2 [mips mipsel powerpc sparc] -- RoM; FTBFS -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -------------- next part -------------- An HTML attachment was scrubbed... URL: From andreas at an3as.eu Tue Nov 4 08:28:10 2014 From: andreas at an3as.eu (Andreas Tille) Date: Tue, 4 Nov 2014 09:28:10 +0100 Subject: [Debian-med-packaging] Bug#765285: removed on failed archs In-Reply-To: <54588C9B.3000800@irisa.fr> References: <54588C9B.3000800@irisa.fr> Message-ID: <20141104082810.GA4835@an3as.eu> Hi Olivier, On Tue, Nov 04, 2014 at 09:21:47AM +0100, Olivier Sallou wrote: > Waiting upstream fix on aotmic operations, a RM request has been sent to > remove binaries from failing archs: > > #766961: RM: mapsembler2 [mips mipsel powerpc sparc] -- RoM; FTBFS What about mapsembler2/amd64 unsatisfiable Depends: libhdf5-7 [1] Looks suspicious to me as well. Kind regards Andreas. [1] https://qa.debian.org/excuses.php?package=mapsembler2 -- http://fam-tille.de From olivier.sallou at irisa.fr Tue Nov 4 13:13:20 2014 From: olivier.sallou at irisa.fr (Olivier Sallou) Date: Tue, 04 Nov 2014 14:13:20 +0100 Subject: [Debian-med-packaging] Bug#765285: lower severity to important Message-ID: <5458D0F0.2070302@irisa.fr> package: mapsembler2 severity 765285 important thanks FTBS archs have been removed by FTP masters (#766961). -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -------------- next part -------------- An HTML attachment was scrubbed... URL: From redazione at musicletter.it Tue Nov 4 14:59:58 2014 From: redazione at musicletter.it (Musicletter.it) Date: Tue, 4 Nov 2014 15:59:58 +0100 Subject: [Debian-med-packaging] La festa: 10 anni di Musicletter.it (2005-2015) Message-ID: <0f7025473bf9076ea64d6714069a8836@www.musicletter.it> An HTML attachment was scrubbed... URL: From victorydoncan at gmail.com Tue Nov 4 15:42:08 2014 From: victorydoncan at gmail.com (victory doncan) Date: Tue, 4 Nov 2014 17:42:08 +0200 Subject: [Debian-med-packaging] can we be friend Message-ID: can we be friend (victorydoncan at gmail.com) My name is Victory I am a simple and decent girl I'm interested in you for a good friendship please contact me with my email address ( victorydoncan at gmail.com) for better introduction and for my photos and confidential discussion. -------------- next part -------------- An HTML attachment was scrubbed... URL: From noreply at release.debian.org Tue Nov 4 16:39:16 2014 From: noreply at release.debian.org (Debian testing watch) Date: Tue, 04 Nov 2014 16:39:16 +0000 Subject: [Debian-med-packaging] debian-med 1.99 MIGRATED to testing Message-ID: FYI: The status of the debian-med source package in Debian's testing distribution has changed. Previous version: 1.13.2 Current version: 1.99 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Tue Nov 4 16:39:17 2014 From: noreply at release.debian.org (Debian testing watch) Date: Tue, 04 Nov 2014 16:39:17 +0000 Subject: [Debian-med-packaging] edfbrowser 1.54-2 MIGRATED to testing Message-ID: FYI: The status of the edfbrowser source package in Debian's testing distribution has changed. Previous version: 1.53-1 Current version: 1.54-2 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Tue Nov 4 16:39:17 2014 From: noreply at release.debian.org (Debian testing watch) Date: Tue, 04 Nov 2014 16:39:17 +0000 Subject: [Debian-med-packaging] hhsuite 2.0.16-3 MIGRATED to testing Message-ID: FYI: The status of the hhsuite source package in Debian's testing distribution has changed. Previous version: 2.0.16-2 Current version: 2.0.16-3 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Tue Nov 4 16:39:17 2014 From: noreply at release.debian.org (Debian testing watch) Date: Tue, 04 Nov 2014 16:39:17 +0000 Subject: [Debian-med-packaging] imagej 1.49i+dfsg-1 MIGRATED to testing Message-ID: FYI: The status of the imagej source package in Debian's testing distribution has changed. 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From noreply at release.debian.org Tue Nov 4 16:39:17 2014 From: noreply at release.debian.org (Debian testing watch) Date: Tue, 04 Nov 2014 16:39:17 +0000 Subject: [Debian-med-packaging] fastaq 1.5.0-1 MIGRATED to testing Message-ID: FYI: The status of the fastaq source package in Debian's testing distribution has changed. Previous version: (not in testing) Current version: 1.5.0-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Tue Nov 4 16:39:20 2014 From: noreply at release.debian.org (Debian testing watch) Date: Tue, 04 Nov 2014 16:39:20 +0000 Subject: [Debian-med-packaging] r-bioc-limma 3.22.1+dfsg-1 MIGRATED to testing Message-ID: FYI: The status of the r-bioc-limma source package in Debian's testing distribution has changed. Previous version: 3.20.9+dfsg-1 Current version: 3.22.1+dfsg-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Tue Nov 4 16:39:20 2014 From: noreply at release.debian.org (Debian testing watch) Date: Tue, 04 Nov 2014 16:39:20 +0000 Subject: [Debian-med-packaging] r-bioc-edger 3.8.2+dfsg-1 MIGRATED to testing Message-ID: FYI: The status of the r-bioc-edger source package in Debian's testing distribution has changed. Previous version: 3.6.8+dfsg-1 Current version: 3.8.2+dfsg-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Tue Nov 4 16:39:20 2014 From: noreply at release.debian.org (Debian testing watch) Date: Tue, 04 Nov 2014 16:39:20 +0000 Subject: [Debian-med-packaging] r-cran-matrixstats 0.10.3-1 MIGRATED to testing Message-ID: FYI: The status of the r-cran-matrixstats source package in Debian's testing distribution has changed. Previous version: 0.10.0-1 Current version: 0.10.3-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From ftpmaster at ftp-master.debian.org Tue Nov 4 19:47:38 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 04 Nov 2014 19:47:38 +0000 Subject: [Debian-med-packaging] Processing of orthanc_0.8.5+dfsg-1_amd64.changes Message-ID: orthanc_0.8.5+dfsg-1_amd64.changes uploaded successfully to localhost along with the files: orthanc_0.8.5+dfsg-1.dsc orthanc_0.8.5+dfsg.orig.tar.xz orthanc_0.8.5+dfsg-1.debian.tar.xz orthanc_0.8.5+dfsg-1_amd64.deb liborthancclient0.8_0.8.5+dfsg-1_amd64.deb liborthancclient-dev_0.8.5+dfsg-1_amd64.deb liborthancclient-doc_0.8.5+dfsg-1_all.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Tue Nov 4 19:49:48 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 04 Nov 2014 19:49:48 +0000 Subject: [Debian-med-packaging] orthanc_0.8.5+dfsg-1_amd64.changes ACCEPTED into experimental Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 04 Nov 2014 16:47:54 +0100 Source: orthanc Binary: orthanc liborthancclient0.8 liborthancclient-dev liborthancclient-doc Architecture: source amd64 all Version: 0.8.5+dfsg-1 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sebastien Jodogne Description: liborthancclient-dev - Orthanc Client development files liborthancclient-doc - Orthanc Client documentation liborthancclient0.8 - Orthanc Client runtime library orthanc - RESTful DICOM server for healthcare and medical research Changes: orthanc (0.8.5+dfsg-1) experimental; urgency=medium . [ Sebastien Jodogne ] * New upstream version . [ Andreas Tille ] * d/watch: repacksuffix=+dfsg Checksums-Sha1: dfa76d3e05d7d577d66930de6e85d0fb101f270a 2629 orthanc_0.8.5+dfsg-1.dsc 1d8e04c8d7ee1b49c5e64fe2a9f79da89ed12579 425168 orthanc_0.8.5+dfsg.orig.tar.xz 99907f2b2d18d38282f0285410a560ab9cb8acbd 1729940 orthanc_0.8.5+dfsg-1.debian.tar.xz 92697abc49759effc0ebeb34baced5ec4c4f6726 604856 orthanc_0.8.5+dfsg-1_amd64.deb d17c31d0316007de1107d33ad5d8c1b5e4b1aa59 147374 liborthancclient0.8_0.8.5+dfsg-1_amd64.deb 3a0bdf315fb34261f215999673b7356cab7f42d3 31578 liborthancclient-dev_0.8.5+dfsg-1_amd64.deb 820bb88d86f38bf49ab63791351a7e06d2f89a55 102686 liborthancclient-doc_0.8.5+dfsg-1_all.deb Checksums-Sha256: 8a013f04cae1ad8e138a590ce19c8a68be371f55830a3c4b1f14b347bc88c177 2629 orthanc_0.8.5+dfsg-1.dsc 6b069fcf99af574980eb591b2af6b64d8c4ec9ab71aaea2e6402ca5392e4744b 425168 orthanc_0.8.5+dfsg.orig.tar.xz aba5aaa403ad20b32bc0a035ca1acf4ee21725ab6dffb06787437019735f1a71 1729940 orthanc_0.8.5+dfsg-1.debian.tar.xz 64339e940b7e42b3bbb095095a2aa1fa8556ef82256f92b7784d76fd161a702b 604856 orthanc_0.8.5+dfsg-1_amd64.deb 59d9e1c66b6da60b86cf938bab7bc8f0ee363b75eee293554a17e32df5f2b7a1 147374 liborthancclient0.8_0.8.5+dfsg-1_amd64.deb 91b0eacfcc64fa6f92ce64a2f8b1082867f8137e646d4c773a93aa652a81a417 31578 liborthancclient-dev_0.8.5+dfsg-1_amd64.deb 059574966a5d9f4ac22d9a11737fcfac464dbcecbd255994b297b88a35870e6e 102686 liborthancclient-doc_0.8.5+dfsg-1_all.deb Files: cc62a6a53101caeeab2ebc8f31b587c2 2629 science optional orthanc_0.8.5+dfsg-1.dsc 33c87a64affbb9ef74da501ccc085832 425168 science optional orthanc_0.8.5+dfsg.orig.tar.xz 0e922df3bf2014df8b14ca0192c63d26 1729940 science optional orthanc_0.8.5+dfsg-1.debian.tar.xz 243b0514aa870353bd541e64e3dfb6eb 604856 science optional orthanc_0.8.5+dfsg-1_amd64.deb f7036549a27239ae5867f74e7c709ddd 147374 libs optional liborthancclient0.8_0.8.5+dfsg-1_amd64.deb 8c4c6e950e466df9643c714d777595b2 31578 libdevel optional liborthancclient-dev_0.8.5+dfsg-1_amd64.deb c61746c842ae62c9b183b5c27cca0916 102686 doc optional liborthancclient-doc_0.8.5+dfsg-1_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCgAGBQJUWSymAAoJEFeKBJTRxkbRvKAP/2nu8kTxgdcvD5ltDJh56FAn e5TY2IBpwg8mqsWSwRI6/4rK5AqEIoZ8lTmD3xPidwcsfmfy/5k5LtY2xdnciLN/ 8Uqi3oZxgCVZGjDLqym/iNOPpQz1s8+Z2G3al3M+bPhZZolQwWxfjqtcxjLDsPsF MSykKyIs/JWdrgorQGwUDpyTSsSyrNoQD5r+4ciwu0TrANFhUPDDEzTITm40kSjW sUNGM4B/6OAYMuz5SD3Y9iZ/dUKZM1hIyns2W4Flu0rCB9F0y1lGBHigcX9foo03 szcbc3naLvvwGsG34WZq3+CJ7uB5meMe/xJ0AIm87WvVlurJe77Xu59DhsMSTE9L dj0TdNycJ6r/E/ciO3h46WpVzomgekwuvjr+iwlf+ej77o8O/hx0/ejh5Iy4pnZN cDOixainTVAgBpfR4DUh9I38LicTGoD2UEBMpi8GmLzpUakSYpuASkH62Uu/L5rl oSKQzYah3z9LSWQFnHevwvDE0yss8gLUBBwNa9Cya9BXpFIatjdDZfdYlNBecdCm uSGcVrevNhfOT1W6g0XpNEHygGLGE1YyXjVRz64j7Vpdq5+WmmZodl/NgcBPm1Eo G+syqrkVVNqP21st8qZpkJFX0vOlLg/9qyOcs+psStDnRYJrEBdulTWGKUHwahpF FaTr2r796AZUXPNxe+Y1 =+Crg -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From anbe at debian.org Wed Nov 5 03:00:21 2014 From: anbe at debian.org (Andreas Beckmann) Date: Wed, 05 Nov 2014 04:00:21 +0100 Subject: [Debian-med-packaging] Bug#768114: hhsuite-doc: fails to upgrade from 'wheezy' - trying to overwrite /usr/share/doc-base/hhsuite Message-ID: <20141105030021.7485.16052.reportbug@zam581.zam.kfa-juelich.de> Package: hhsuite-doc Version: 2.0.16-3 Severity: serious User: debian-qa at lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'wheezy'. It installed fine in 'wheezy', then the upgrade to 'jessie' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at http://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces >From the attached log (scroll to the bottom...): Selecting previously unselected package hhsuite-doc. Unpacking hhsuite-doc (from .../hhsuite-doc_2.0.16-3_all.deb) ... dpkg: error processing /var/cache/apt/archives/hhsuite-doc_2.0.16-3_all.deb (--unpack): trying to overwrite '/usr/share/doc-base/hhsuite', which is also in package hhsuite 2.0.15-1 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/hhsuite-doc_2.0.16-3_all.deb cheers, Andreas -------------- next part -------------- A non-text attachment was scrubbed... Name: hhsuite=2.0.15-1_hhsuite-doc=2.0.16-3.log.gz Type: application/gzip Size: 5937 bytes Desc: not available URL: From ftpmaster at ftp-master.debian.org Wed Nov 5 06:54:35 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 05 Nov 2014 06:54:35 +0000 Subject: [Debian-med-packaging] Processing of hhsuite_2.0.16-4_amd64.changes Message-ID: hhsuite_2.0.16-4_amd64.changes uploaded successfully to localhost along with the files: hhsuite_2.0.16-4.dsc hhsuite_2.0.16-4.debian.tar.xz hhsuite_2.0.16-4_amd64.deb hhsuite-doc_2.0.16-4_all.deb hhsuite-data_2.0.16-4_all.deb hhsuite-dbg_2.0.16-4_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Wed Nov 5 07:04:21 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 05 Nov 2014 07:04:21 +0000 Subject: [Debian-med-packaging] hhsuite_2.0.16-4_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 05 Nov 2014 07:21:05 +0100 Source: hhsuite Binary: hhsuite hhsuite-doc hhsuite-data hhsuite-dbg Architecture: source amd64 all Version: 2.0.16-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: hhsuite - sensitive protein sequence searching based on HMM-HMM alignment hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment ( hhsuite-dbg - sensitive protein sequence searching based on HMM-HMM alignment ( hhsuite-doc - documentation for HHsuite for HMM-HMM comparisons Closes: 768114 Changes: hhsuite (2.0.16-4) unstable; urgency=medium . * Add missing Breaks statement for hhsuite-doc Closes: #768114 Checksums-Sha1: 5da74a5c113dada57eebc891401083bb5e3a5f4c 2200 hhsuite_2.0.16-4.dsc d6b86ac762a306f0547b4d52d9fd16e0f2fcdc4a 9904 hhsuite_2.0.16-4.debian.tar.xz 0949d5ab29c54c56fcae935b5a7024933883c7fc 739836 hhsuite_2.0.16-4_amd64.deb 69a25211b24076d1bf13197ab4b793e2f8e822e9 329560 hhsuite-doc_2.0.16-4_all.deb a1616c75b1bea5c80393345940dca743ac9e8902 2159382 hhsuite-data_2.0.16-4_all.deb ed0cc9b8bd5b774d2b3db9c7d75df3814c21e7cd 3529018 hhsuite-dbg_2.0.16-4_amd64.deb Checksums-Sha256: 5c832573cd65c2ad82a37ff386fef996000fbe892b0647836ace457291f89e23 2200 hhsuite_2.0.16-4.dsc a3a5be5c558a59229c7a82c054bf2831ca94552c66d0ad836c97596011636ced 9904 hhsuite_2.0.16-4.debian.tar.xz 025c290849a1cbb775cdf266717adaef01e272f1a3b3cb2392fdef6ca759d5d8 739836 hhsuite_2.0.16-4_amd64.deb 443471a52411457f99895a42a97a666c025cf664037689128954c92bdd72d350 329560 hhsuite-doc_2.0.16-4_all.deb 28b79c5b755323c84dea6750c77a2ef1d1fce6ab9403f4ee1e53c4e404b56760 2159382 hhsuite-data_2.0.16-4_all.deb 56b58a1dea561821b9853129dc1e49beca64ea0ffa8a6f292c98b74ccee25cd7 3529018 hhsuite-dbg_2.0.16-4_amd64.deb Files: 44e48ac06c7b171f8368d455059ada0c 2200 science optional hhsuite_2.0.16-4.dsc f8d02a5414d89d1c135169d12ac04546 9904 science optional hhsuite_2.0.16-4.debian.tar.xz aa6a895c3a2341d31fdfb39270786e15 739836 science optional hhsuite_2.0.16-4_amd64.deb a050b9e62d20632ff04c4e2d1a961649 329560 doc optional hhsuite-doc_2.0.16-4_all.deb 929ca35627e2188d6e89c093d80f9c38 2159382 science optional hhsuite-data_2.0.16-4_all.deb a5f00fcb394808a6d429e817df5002b5 3529018 debug extra hhsuite-dbg_2.0.16-4_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJUWcLnAAoJEFeKBJTRxkbRPHcP/RGBgyJs63xibGq5Jowzfz1y UKLqlXWDlZXRKrzmuo2V6VB61nxM/Xjm8aILUa07pIsW3uCdWdZ2TKXTY+Pq9Cpv O3HUZH5X+TQvZD04vEVzyHriRbSRM48tju4L2DMHAwj/aLTIdEGxBIkZuUhqW58R Sn32Njd4sLmnnDYzlJQ4dmAPctKboYM8emPYGSnsSJMJJDShMHqsbwr6OOOgBkCi /jUEeoi63v4KC7P3VFEl/54mYw2pQPoaXy15sDtOWIdXbXo3LF1wzSXSZAvvl4Kd 8ogZzqHwHEveOi1h/4ChCfWl5cZ5Ky/yjqisSmFom4U2c/nUhmk52FINaMBqmLSQ k1k/YI2wUudKZd1ag3kx9kf8twFJS564oHKXbjKkFFyp/7gjgNCvoA/r0cD66S3a LWf4LJgdLEewEUGpDoqycSYnCpR1t+IAwh6bB7bGTnUMAFsF1D1BTWPvjbf3uXGM PZxifTRpITG5QvV+IWmYvX7mjkF0TsBkuaXmJk7BYDjAt2UUt4NXsClpxG9sDoro W8g9441w1n2M2w1bDXAB2Zs8cbCZ3tCbGkqcXp+fx3cxltAIWjoPfnKAo6pQGQNn 9nRvTuDdszb1BD1zhvgp+htax47/C+etmqrOaDNrj5E+iYZwqpYoawUISsbDT5qO 1r6BuGf3xQlgGVn3s/lZ =q1zc -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From owner at bugs.debian.org Wed Nov 5 07:06:09 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Wed, 05 Nov 2014 07:06:09 +0000 Subject: [Debian-med-packaging] Bug#768114: marked as done (hhsuite-doc: fails to upgrade from 'wheezy' - trying to overwrite /usr/share/doc-base/hhsuite) References: <20141105030021.7485.16052.reportbug@zam581.zam.kfa-juelich.de> Message-ID: Your message dated Wed, 05 Nov 2014 07:04:21 +0000 with message-id and subject line Bug#768114: fixed in hhsuite 2.0.16-4 has caused the Debian Bug report #768114, regarding hhsuite-doc: fails to upgrade from 'wheezy' - trying to overwrite /usr/share/doc-base/hhsuite to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 768114: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=768114 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Andreas Beckmann Subject: hhsuite-doc: fails to upgrade from 'wheezy' - trying to overwrite /usr/share/doc-base/hhsuite Date: Wed, 05 Nov 2014 04:00:21 +0100 Size: 11175 URL: -------------- next part -------------- An embedded message was scrubbed... From: Andreas Tille Subject: Bug#768114: fixed in hhsuite 2.0.16-4 Date: Wed, 05 Nov 2014 07:04:21 +0000 Size: 6137 URL: From tille at debian.org Wed Nov 5 07:06:44 2014 From: tille at debian.org (Andreas Tille) Date: Wed, 05 Nov 2014 08:06:44 +0100 Subject: [Debian-med-packaging] Bug#768125: unblock: hhsuite/2.0.16-4 Message-ID: <20141105070644.2922.1529.reportbug@mail.an3as.eu> Package: release.debian.org Severity: normal User: release.debian.org at packages.debian.org Usertags: unblock Please unblock package hhsuite Add missing Breaks statement for hhsuite-doc Closes: #768114 Debdiff is attached. Thanks for your work for the Debian release Andreas. unblock hhsuite/2.0.16-4 -- System Information: Debian Release: 7.7 APT prefers stable APT policy: (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.2.0-4-amd64 (SMP w/1 CPU core) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -------------- next part -------------- A non-text attachment was scrubbed... Name: hhsuite_2.0.16-3_2.0.16-4.debdiff Type: text/x-diff Size: 1074 bytes Desc: not available URL: From noreply at release.debian.org Wed Nov 5 16:39:17 2014 From: noreply at release.debian.org (Debian testing watch) Date: Wed, 05 Nov 2014 16:39:17 +0000 Subject: [Debian-med-packaging] bowtie2 2.2.4-1 MIGRATED to testing Message-ID: FYI: The status of the bowtie2 source package in Debian's testing distribution has changed. Previous version: 2.2.3-1 Current version: 2.2.4-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Wed Nov 5 16:39:19 2014 From: noreply at release.debian.org (Debian testing watch) Date: Wed, 05 Nov 2014 16:39:19 +0000 Subject: [Debian-med-packaging] mrbayes 3.2.3+dfsg-1 MIGRATED to testing Message-ID: FYI: The status of the mrbayes source package in Debian's testing distribution has changed. Previous version: 3.2.2+dfsg-1 Current version: 3.2.3+dfsg-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Wed Nov 5 16:39:20 2014 From: noreply at release.debian.org (Debian testing watch) Date: Wed, 05 Nov 2014 16:39:20 +0000 Subject: [Debian-med-packaging] python-hl7 0.3.2-1 MIGRATED to testing Message-ID: FYI: The status of the python-hl7 source package in Debian's testing distribution has changed. Previous version: 0.2.2-1 Current version: 0.3.2-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Wed Nov 5 16:39:20 2014 From: noreply at release.debian.org (Debian testing watch) Date: Wed, 05 Nov 2014 16:39:20 +0000 Subject: [Debian-med-packaging] relion 1.3+dfsg-2 MIGRATED to testing Message-ID: FYI: The status of the relion source package in Debian's testing distribution has changed. Previous version: (not in testing) Current version: 1.3+dfsg-2 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Wed Nov 5 16:39:20 2014 From: noreply at release.debian.org (Debian testing watch) Date: Wed, 05 Nov 2014 16:39:20 +0000 Subject: [Debian-med-packaging] r-cran-checkmate 1.5.0-1 MIGRATED to testing Message-ID: FYI: The status of the r-cran-checkmate source package in Debian's testing distribution has changed. Previous version: 1.4-1 Current version: 1.5.0-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From rec.directv at focusbs.com Wed Nov 5 18:10:04 2014 From: rec.directv at focusbs.com (Google) Date: Wed, 5 Nov 2014 16:10:04 -0200 (ARST) Subject: [Debian-med-packaging] Powered By Google Message-ID: <690731433.788411415211004907.JavaMail.javamailuser@localhost> Dear Google User, You have been selected as a winner for using Google services. Find attached email with more details. Congratulations, Matt Brittin. CEO Google UK. ?2014 Google Terms & Privacy -------------- next part -------------- A non-text attachment was scrubbed... Name: Google Inc..jpg Type: image/jpeg Size: 842305 bytes Desc: not available URL: From anbe at debian.org Thu Nov 6 08:47:18 2014 From: anbe at debian.org (Andreas Beckmann) Date: Thu, 06 Nov 2014 09:47:18 +0100 Subject: [Debian-med-packaging] Bug#768279: r-cran-epi: unhandled symlink to directory conversion: /usr/lib/R/site-library/Epi/doc Message-ID: <20141106084718.13115.43869.reportbug@zam581.zam.kfa-juelich.de> Package: r-cran-epi Version: 1.1.67-2 Severity: serious User: debian-qa at lists.debian.org Usertags: piuparts Hi, an upgrade test with piuparts revealed that your package installs files over existing symlinks and possibly overwrites files owned by other packages. This usually means an old version of the package shipped a symlink but that was later replaced by a real (and non-empty) directory. This kind of overwriting another package's files cannot be detected by dpkg. This was observed on the following upgrade paths: wheezy -> jessie For /usr/share/doc/PACKAGE this may not be problematic as long as both packages are installed, ship byte-for-byte identical files and are upgraded in lockstep. But once one of the involved packages gets removed, the other one will lose its documentation files, too, including the copyright file, which is a violation of Policy 12.5: http://www.debian.org/doc/debian-policy/ch-docs.html#s-copyrightfile For other overwritten locations anything interesting may happen. Note that dpkg intentionally does not replace directories with symlinks and vice versa, you need the maintainer scripts to do this. See in particular the end of point 4 in http://www.debian.org/doc/debian-policy/ch-maintainerscripts.html#s-unpackphase It is recommended to use the dpkg-maintscript-helper commands 'dir_to_symlink' and 'symlink_to_dir' (available since dpkg 1.17.2) to perform the conversion, ideally using d/$PACKAGE.mainstscript. See dpkg-maintscript-helper(1) and dh_installdeb(1) for details. >From the attached log (usually somewhere in the middle...): 1m15.9s INFO: dirname part contains a symlink: /usr/lib/R/site-library/Epi/doc/Follow-up.R (r-cran-epi) != /usr/share/doc/r-cran-epi/Follow-up.R (?) /usr/lib/R/site-library/Epi/doc/Follow-up.pdf (r-cran-epi) != /usr/share/doc/r-cran-epi/Follow-up.pdf (?) /usr/lib/R/site-library/Epi/doc/Follow-up.rnw (r-cran-epi) != /usr/share/doc/r-cran-epi/Follow-up.rnw (?) /usr/lib/R/site-library/Epi/doc/index.html (r-cran-epi) != /usr/share/doc/r-cran-epi/index.html (?) /usr/lib/R/site-library/Epi/doc/sim-Lexis.R (r-cran-epi) != /usr/share/doc/r-cran-epi/sim-Lexis.R (?) /usr/lib/R/site-library/Epi/doc/sim-Lexis.pdf (r-cran-epi) != /usr/share/doc/r-cran-epi/sim-Lexis.pdf (?) /usr/lib/R/site-library/Epi/doc/sim-Lexis.rnw (r-cran-epi) != /usr/share/doc/r-cran-epi/sim-Lexis.rnw (?) cheers, Andreas -------------- next part -------------- A non-text attachment was scrubbed... Name: r-cran-epi_1.1.67-2.log.gz Type: application/gzip Size: 29104 bytes Desc: not available URL: From cdo at samgum.ru Thu Nov 6 10:56:59 2014 From: cdo at samgum.ru (cdo at samgum.ru) Date: Thu, 06 Nov 2014 10:56:59 +0000 Subject: [Debian-med-packaging] Package Alert! Message-ID: <20141106115724.8912654EEF@mail.samgum.ru> Urgent Delivery Alert! This is a reminder that Your packet is already on the transit point (England).It has been onhold awaiting pickup since October 30th,2014. You are expected to call or email us with a confirmation of the exact recipient address. Recipient Postal Details required are stated below; FULL NAME: ADDRESS : TELEPHONE NUMBER : From our database,it shows your package is coming in with a high priority delivery (highly classified package),so you should attend to this case promptly.You have to Confirm if you wish to come to London for pickup of your package or if you want us to deliver to you in your location. For more info,call us on: +447466447906 or send email only to (jenseni1 at aim.com), Note this is a highly valuable delivery and so,you must attend to all messages promptly. Looking forward to a prompt response from you. Ivan Jensen (Delivery Agent) Tel: +447466447906 Email:jenseni1 at aim.com -------------- next part -------------- An HTML attachment was scrubbed... URL: From noreply at release.debian.org Thu Nov 6 16:39:12 2014 From: noreply at release.debian.org (Debian testing watch) Date: Thu, 06 Nov 2014 16:39:12 +0000 Subject: [Debian-med-packaging] gmap 2014-10-22-1 MIGRATED to testing Message-ID: FYI: The status of the gmap source package in Debian's testing distribution has changed. Previous version: 2014-10-09-1 Current version: 2014-10-22-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From noreply at release.debian.org Thu Nov 6 16:39:14 2014 From: noreply at release.debian.org (Debian testing watch) Date: Thu, 06 Nov 2014 16:39:14 +0000 Subject: [Debian-med-packaging] tophat 2.0.13+dfsg-1 MIGRATED to testing Message-ID: FYI: The status of the tophat source package in Debian's testing distribution has changed. Previous version: 2.0.12+dfsg-3 Current version: 2.0.13+dfsg-1 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. 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Les frais de livraisons s'?l?vent ? 7,20 ? par commande livrable en France m?tropolitaine. Les frais de livraisons s'?l?vent ? 15,90 ? par commande livrable dans les Dom Tom. Les frais de livraisons s'?l?vent ? 15,90 ? par commande livrable dans les pays de la C.E.E. 7 JOURS POUR RETOURNER 7 JOURS POUR ?TRE REMBOURS? Vous disposez de 7 jours pour nous retourner l'article qui ne vous aurait pas satisfait Chemise Web vous rembourse dans un d?lais de 7 jours. Vous pouvez obtenir un N? de retour sur simple demande. Il vous suffit de vous connecter sur le site dans votre compte, puis cliquez sur demande de retour ou ?change. Un N? de retour vous sera attribu? en ligne. Retournez l'article dans son emballage d'origine accompagn? de la facture. 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Chaque point de fid?lit? vous rapporte une r?duction de 1% sur vos achats hors frais de port* jusqu'? 300 ? d'achat, soit 15 % de remise. Exemple : pour 70? d'achats, vous cumulez 3,5 points de fid?lit?. * ? noter : ? l'int?rieur d'une tranche de 10 ?, la r?gle de l'arrondi s'applique. Exemple : pour 104 ?, vous obtenez 5 points de fid?lit? (arrondis ? 100 ? d'achat). L'?mission du bon de r?duction se fait avec d?cimale apr?s la virgule par tranche de 0,5. Le plafond de remise est fix? ? 15% (soit ?quivalent ? 300 ? d'achat) COMMENT CA MARCHE ? > Vous achetez sur Chemise Web. > Vos points fid?lit? se transforment en un pourcentage de remise dans la limite de 15% de r?duction. > Vous avez atteint la limite des 300 ? d'achat ? Un email avec un code promo correspondant au montant de votre bon de r?duction vous sera automatiquement envoy? par email > Vous avez effectu? un achat sup?rieur ? 300 ? ou votre cumul de points fid?lit? d?passe les 15% de remise ? 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URL: From ftpmaster at ftp-master.debian.org Fri Nov 7 06:24:53 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 07 Nov 2014 06:24:53 +0000 Subject: [Debian-med-packaging] Processing of hhsuite_2.0.16-5_amd64.changes Message-ID: hhsuite_2.0.16-5_amd64.changes uploaded successfully to localhost along with the files: hhsuite_2.0.16-5.dsc hhsuite_2.0.16-5.debian.tar.xz hhsuite_2.0.16-5_amd64.deb hhsuite-doc_2.0.16-5_all.deb hhsuite-data_2.0.16-5_all.deb hhsuite-dbg_2.0.16-5_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Fri Nov 7 06:34:11 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 07 Nov 2014 06:34:11 +0000 Subject: [Debian-med-packaging] hhsuite_2.0.16-5_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 07 Nov 2014 07:08:34 +0100 Source: hhsuite Binary: hhsuite hhsuite-doc hhsuite-data hhsuite-dbg Architecture: source amd64 all Version: 2.0.16-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: hhsuite - sensitive protein sequence searching based on HMM-HMM alignment hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment ( hhsuite-dbg - sensitive protein sequence searching based on HMM-HMM alignment ( hhsuite-doc - documentation for HHsuite for HMM-HMM comparisons Changes: hhsuite (2.0.16-5) unstable; urgency=medium . * Add Replaces: hhsuite which was missing as well Checksums-Sha1: c9135525c50d5d14840e633ab94450ab0fc47d8d 2200 hhsuite_2.0.16-5.dsc 68767292c734568f54c6e51adecdd6267a7bd159 9944 hhsuite_2.0.16-5.debian.tar.xz 556377735da5c75f43afcc1311bd18b5dcd2112e 739766 hhsuite_2.0.16-5_amd64.deb 680ee109d7c021cdb5f2f789e58074e11860a152 329600 hhsuite-doc_2.0.16-5_all.deb e36308e7925efc234bf7d84aa28ca67541ff8205 2162508 hhsuite-data_2.0.16-5_all.deb cae1376f6e7b053fbee82698bdf753f476f39ef1 3526150 hhsuite-dbg_2.0.16-5_amd64.deb Checksums-Sha256: bec865553cd2cb433ae010b995d7821e9590e89b1ce03bbd93c2dad55905ae16 2200 hhsuite_2.0.16-5.dsc 1a5a6e6c736b1dd0ce301609dd3b568b0ae8183199a6e95114ec7e3383f02824 9944 hhsuite_2.0.16-5.debian.tar.xz 1a4f48af01dc915fa8ba99007755c42e6dd9e8776cf7122e8abead4677de5800 739766 hhsuite_2.0.16-5_amd64.deb 2e308159094a0884cd820c6d8f3ab6c52ac425d3e6ac31122000d60a4d39105a 329600 hhsuite-doc_2.0.16-5_all.deb 47642bb0386bdcef781066b562fdb4fe3c344d3d5d52add1cfb8a1e031004643 2162508 hhsuite-data_2.0.16-5_all.deb 58283cc3b20b9540921a8ad1cf006fa0cdaa5296d3f78eb235232434e2bd4435 3526150 hhsuite-dbg_2.0.16-5_amd64.deb Files: b5e55771c631b6e9b6f1f7c13f70b21b 2200 science optional hhsuite_2.0.16-5.dsc dce905fe16b9312ecbeaf67ca1637e34 9944 science optional hhsuite_2.0.16-5.debian.tar.xz 57322f34bb1633f5252ac146bcc43219 739766 science optional hhsuite_2.0.16-5_amd64.deb ebca8e5fd1dbc155d145ec82f58b2322 329600 doc optional hhsuite-doc_2.0.16-5_all.deb 5bce22e3c84b1a5f5783572f03f87bba 2162508 science optional hhsuite-data_2.0.16-5_all.deb 1927a4214b7bedcbaa818f4e8f04f290 3526150 debug extra hhsuite-dbg_2.0.16-5_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJUXGMcAAoJEFeKBJTRxkbRQcQP/jp94GUTmzYqF5vW79ygkZVw wB98YkLdY+ZPz8DiL7LDt4njWgPmoE3j0cO+SK9g35nQ5huF+a0r2wOzyTx3KPlh NidJBGQ5HP9uPv0K5rf+vIIJoxkSG/0cnP0OjaLsemk2kwNH6tCq5ut/O9ZHcgRq WHyDmbik0uQnHVXP8FGs0DlrTmjnkXNZ1lbjogvAbCl3TD3xHAph0eD+Y7i54kqD Y3TJ5CkG//C6DtbS6UY4vQLhD+E7iH3lqwKUyPFgqxEkc5OcP44bMFCe6uxCzHMF Anpk/ikia5ldtETi22/j909myoM1Zaa4WRh9qz+9w9xm8idHWnh5WNh2TNu80Q3K ftrw6rIXsALhBJy9mZL8+YlUYYx0IBfvBf0D7yWeMEl0QWlCHIGecYKIFxg5d6kV dvy6ZDC1Oj4ex/zGvoSpUpWQ9voFS6kxn+QXpz31NJokuezGx1RUho6YIT+S48Ev 7ogcWNX2kaErp8b7d6D1RKiPpDTxzpfEbboHnWYC9ckUFVgy/ydTHEe6GLhLPu4p uXx4JCjeTKFA/OBw5ST4BrKjurlzaPV9Jw/tCl8fhG8s4mpBOAGG/BYUeqYQs9YO e5fmPoRSdCsWs54BpMgqCWwE72rW0ELzfQ9zEh9mMJPSPmf2VJ9RBAJ9sjns19rd SpN898m8puZ0+gMVxHOr =6F4i -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From malat at debian.org Fri Nov 7 07:57:36 2014 From: malat at debian.org (Mathieu Malaterre) Date: Fri, 7 Nov 2014 08:57:36 +0100 Subject: [Debian-med-packaging] Bug#768404: charls is not multiarch ready Message-ID: Package: libcharls1 Version: 1.0-5 Severity: important Although the layout of the package is correct, as per: https://wiki.debian.org/Multiarch/Implementation#dh.281.29_and_autotools It is missing the last steps: [...] Once you have built the package and verified that the shared library package contains only the expected files, and that your -dev package still works, mark this shared library package Multi-Arch: same in debian/control. Mark the common package(which is "all") Multi-Arch: foreign in debian/control, if it may be needed by the shared library package. [...] From malat at debian.org Fri Nov 7 08:44:21 2014 From: malat at debian.org (Mathieu Malaterre) Date: Fri, 7 Nov 2014 09:44:21 +0100 Subject: [Debian-med-packaging] Bug#768405: socket++ is not multiarch ready Message-ID: Package: libsocket++1 Version: 1.12.13-7 Severity: important Although the layout of the package is correct, as per: https://wiki.debian.org/Multiarch/Implementation#dh.281.29_and_autotools It is missing the last steps: [...] Once you have built the package and verified that the shared library package contains only the expected files, and that your -dev package still works, mark this shared library package Multi-Arch: same in debian/control. Mark the common package(which is "all") Multi-Arch: foreign in debian/control, if it may be needed by the shared library package. [...] From ftpmaster at ftp-master.debian.org Fri Nov 7 09:03:24 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 07 Nov 2014 09:03:24 +0000 Subject: [Debian-med-packaging] Processing of charls_1.0-6_amd64.changes Message-ID: charls_1.0-6_amd64.changes uploaded successfully to ftp-master.debian.org along with the files: charls_1.0-6.dsc charls_1.0-6.debian.tar.xz libcharls-dev_1.0-6_amd64.deb libcharls1_1.0-6_amd64.deb Greetings, Your Debian queue daemon (running on host coccia.debian.org) From ftpmaster at ftp-master.debian.org Fri Nov 7 09:05:33 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 07 Nov 2014 09:05:33 +0000 Subject: [Debian-med-packaging] Processing of charls_1.0-6_amd64.changes Message-ID: charls_1.0-6_amd64.changes uploaded successfully to localhost along with the files: charls_1.0-6.dsc charls_1.0-6.debian.tar.xz libcharls-dev_1.0-6_amd64.deb libcharls1_1.0-6_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Fri Nov 7 09:18:29 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 07 Nov 2014 09:18:29 +0000 Subject: [Debian-med-packaging] Processing of socket++_1.12.13-8_amd64.changes Message-ID: socket++_1.12.13-8_amd64.changes uploaded successfully to ftp-master.debian.org along with the files: socket++_1.12.13-8.dsc socket++_1.12.13-8.debian.tar.xz libsocket++1_1.12.13-8_amd64.deb libsocket++-dev_1.12.13-8_amd64.deb Greetings, Your Debian queue daemon (running on host coccia.debian.org) From ftpmaster at ftp-master.debian.org Fri Nov 7 09:19:23 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 07 Nov 2014 09:19:23 +0000 Subject: [Debian-med-packaging] charls_1.0-6_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Fri, 07 Nov 2014 09:20:43 +0100 Source: charls Binary: libcharls-dev libcharls1 Architecture: source amd64 Version: 1.0-6 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Mathieu Malaterre Description: libcharls-dev - Implementation of the JPEG-LS standard (development libraries) libcharls1 - Implementation of the JPEG-LS standard Closes: 768404 Changes: charls (1.0-6) unstable; urgency=low . * Really make the package multiarch capable. Closes: #768404 * Bump Std-Vers to 3.9.6, no changes needed. Checksums-Sha1: 6c29adb185f629e6a3937c553f3b1863d7865f7b 1987 charls_1.0-6.dsc f18841e54240ce35805b7c213ae2a048bfe66905 5308 charls_1.0-6.debian.tar.xz cf9cd649278ad6c76546dd49e50a97bc4e08b16d 18688 libcharls-dev_1.0-6_amd64.deb b2e8c3c685640c875075f7240fc345635849d934 49974 libcharls1_1.0-6_amd64.deb Checksums-Sha256: fc39ac277d1a6be6ec1d7a33de47283e24c6ca1669f850475ad65bc359b05065 1987 charls_1.0-6.dsc f94bec0b645090f759f37fa1f205e00718939a6e537fa06391ff26e5868c45f1 5308 charls_1.0-6.debian.tar.xz 6ad92f7cad9c4b9bd00ef72800da547f5fda6eaeb059a41c765460ccdaa893a3 18688 libcharls-dev_1.0-6_amd64.deb 5c4ec8b851d6f9765e87b809c4dbf7b954a284d71a4c2fdabf9ddc7901b29f11 49974 libcharls1_1.0-6_amd64.deb Files: dc3ff5d77501ca7169f375a1f6a9b09e 1987 libs optional charls_1.0-6.dsc 73315ac4828e68d415b79012485fcaa2 5308 libs optional charls_1.0-6.debian.tar.xz 7d2d5cee9df7c8c10d23d6b492d314b3 18688 libdevel optional libcharls-dev_1.0-6_amd64.deb 8a4497b40c212e69ce8a65c58495572e 49974 libs optional libcharls1_1.0-6_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) iQIcBAEBAgAGBQJUXILeAAoJEAFx4YKK4JNFvr0P/1BYNjTn6MSjptg6jL3aCTTq EXbkQe4YDM9Lo0vzaFXqvrwTImP8t4IUcOykTwiOjgC1Olu0Ec8YRN74LrsI08q6 zRC/6ucgwaJDZsT52B+xVd3Z6MnjTBra33EukhviDkiJBRaKPEmop1TcClCVFIhu Bzi4QBSYcNlj1HNKNoRFPA5/w5zMLuoDuUJdofQ6L3BsFjT/GL+sYgixrvXfK0gA hBl8EZ1KJzLxypnu01saH508Ta2NBt0GtwX1BADdD6GGe4N3Eq8alOBsNIceN07D mWEhZXtWrUCq+K814RekSWqiliOSyNiC3fwrLZeZEo9k79BlQBkuuT1+fy33g2oU uP67B3hIbBjZr9VH1aUhQliLaXYHbtXAb4CT9jsaMlNDGlnPHJ1TlL54ndz2GtLF qX5pr5JMWjgryWuHZcRBWMMbVu03dcfHx79BxZNixjqPoou87e7WwzB5YICaTCge KohooOXv87+w4jx1UZvFao+evjJz4PcmdKf/Bisv/VwsQhu/9cQkpuH4ZfupsndD 6ZznaSxPFXXxJK4GV93tAdCmG8LknTvT+dNkGA0Il1O2n1fgjkexryXkOw8jt/qX EsAaTcHfJLA2DU6vJ9r8U15x2m9acCJOdgE82B2QK64x22aQvT5lba2Op9zZVWjp DVvpvEmoTRNAnkswH+fz =MYoA -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From ftpmaster at ftp-master.debian.org Fri Nov 7 09:20:39 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 07 Nov 2014 09:20:39 +0000 Subject: [Debian-med-packaging] Processing of socket++_1.12.13-8_amd64.changes Message-ID: socket++_1.12.13-8_amd64.changes uploaded successfully to localhost along with the files: socket++_1.12.13-8.dsc socket++_1.12.13-8.debian.tar.xz libsocket++1_1.12.13-8_amd64.deb libsocket++-dev_1.12.13-8_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From owner at bugs.debian.org Fri Nov 7 09:21:15 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Fri, 07 Nov 2014 09:21:15 +0000 Subject: [Debian-med-packaging] Bug#768404: marked as done (charls is not multiarch ready) References: Message-ID: Your message dated Fri, 07 Nov 2014 09:19:23 +0000 with message-id and subject line Bug#768404: fixed in charls 1.0-6 has caused the Debian Bug report #768404, regarding charls is not multiarch ready to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 768404: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=768404 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Mathieu Malaterre Subject: charls is not multiarch ready Date: Fri, 7 Nov 2014 08:57:36 +0100 Size: 2894 URL: -------------- next part -------------- An embedded message was scrubbed... From: Mathieu Malaterre Subject: Bug#768404: fixed in charls 1.0-6 Date: Fri, 07 Nov 2014 09:19:23 +0000 Size: 5438 URL: From ftpmaster at ftp-master.debian.org Fri Nov 7 09:51:58 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 07 Nov 2014 09:51:58 +0000 Subject: [Debian-med-packaging] socket++_1.12.13-8_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Fri, 07 Nov 2014 09:48:56 +0100 Source: socket++ Binary: libsocket++1 libsocket++-dev Architecture: source amd64 Version: 1.12.13-8 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Mathieu Malaterre Description: libsocket++-dev - lightweight convenience library to handle low level BSD sockets i libsocket++1 - lightweight convenience library to handle low level BSD sockets i Closes: 768405 Changes: socket++ (1.12.13-8) unstable; urgency=low . * Really make the package multiarch capable. Closes: #768405 * Bump Std-Vers to 3.9.6, no changes needed. 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From owner at bugs.debian.org Fri Nov 7 09:54:17 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Fri, 07 Nov 2014 09:54:17 +0000 Subject: [Debian-med-packaging] Bug#768405: marked as done (socket++ is not multiarch ready) References: Message-ID: Your message dated Fri, 07 Nov 2014 09:51:58 +0000 with message-id and subject line Bug#768405: fixed in socket++ 1.12.13-8 has caused the Debian Bug report #768405, regarding socket++ is not multiarch ready to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 768405: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=768405 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Mathieu Malaterre Subject: socket++ is not multiarch ready Date: Fri, 7 Nov 2014 09:44:21 +0100 Size: 2903 URL: -------------- next part -------------- An embedded message was scrubbed... From: Mathieu Malaterre Subject: Bug#768405: fixed in socket++ 1.12.13-8 Date: Fri, 07 Nov 2014 09:51:58 +0000 Size: 5563 URL: From marcano_jana at asdk12.org Fri Nov 7 11:54:26 2014 From: marcano_jana at asdk12.org (marcano_jana) Date: Fri, 7 Nov 2014 11:54:26 +0000 Subject: [Debian-med-packaging] Attn Message-ID: <9F784783A6A1C5429CF1BCD0EBD7AF725827D48A@ITEXCH03.asdk12.org> A Donation has been made to you,Email: gloriamac001 at outlook.com for more details From wakefieldwatson at yahoo.ca Sat Nov 8 10:23:23 2014 From: wakefieldwatson at yahoo.ca (HelpDesk) Date: Sat, 08 Nov 2014 11:23:23 +0100 Subject: [Debian-med-packaging] Please Help Me Message-ID: <20141108102323.aa85ba58@mail.darkov.cz> Dear Beloved, My name is Watson Wakefield, a native of Britain; I am diagnosed with Esophageal Cancer that was discovered very late due to my laxity in Caring for my health. It has defiled all form of medicine and right now, I have only about a few months to live according to medical experts. I have not particularly lived my life so well, as I never really cared for anyone not even myself but my business. Though I am very rich, I was never generous, I was always hostile to people and only focus on my business as that was the only thing I cared for. But now I regret all this as I now know that there is more to life than just wanting to have or make all the money in the world. I believe when God gives me a second chance to come to this world I would live my life a different way from how I have lived it. Now that I know my time is near, I have willed and given most of my properties and assets to my immediate and extended family members and as well as a few close friends. I have decided to give alms to charity organizations, as I want this to be one of the last good deeds I do on earth. So far, I have distributed money to some charity organizations in Africa, U.A.E, London, Ireland and Asia. Now that my health has deteriorated so badly, I cannot do this myself any more. I once asked members of my family to close one of my accounts and donate the money, which I have there to charity Organization in Bulgaria; they refused and kept the money to themselves. Hence, I do not trust them anymore, as they seem not to be contended with what I have left for them. The last of my money which is the huge cash deposit that I have with a financial institute abroad .I will want you to help me collect this deposit and dispatched it to charity organizations. I am writing this from my laptop computer in on sick bed where I wait for my time to come. I pray that God uses you to support me. Looking forward to hearing from you, God Bless You. Watson Wakefield Upozorneni: Tato zprava je urcena vylucne prijemci a obsahuje informace, ktere jsou duverne. Pokud nejste osobou totoznou s prijemcem, upozornujeme, ze zverejnovani, rozsirovani anebo zhotovovani kopii teto zpravy je zakazane. Pokud Vam byla zprava omylem a nebo nedopatrenim dorucena, prosime Vas, abyste nas na to ihned telefonicky upozornili a zaroven nam dorucili zpravu na nasi adresu. Lazne Darkov, a.s. -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: not available Type: image/jpg Size: 73136 bytes Desc: not available URL: From etc-sales at vip.163.com Sat Nov 8 18:50:40 2014 From: etc-sales at vip.163.com (Custom mugs) Date: Sun, 9 Nov 2014 02:50:40 +0800 Subject: [Debian-med-packaging] Imprint Gift Message-ID: debian-med-packaging at lists.alioth.debian.org Dear We supply gift wordwide Hope we can help you on the company gift/Personalized gift: mugs/stubby holders/USB/Pens/Keyrings/T shirt etc We send the gift directly to your company, we save your cost & time Welcome your enquiry -------------- next part -------------- An HTML attachment was scrubbed... URL: From lucas at lucas-nussbaum.net Sun Nov 9 07:07:04 2014 From: lucas at lucas-nussbaum.net (Lucas Nussbaum) Date: Sun, 9 Nov 2014 08:07:04 +0100 Subject: [Debian-med-packaging] Bug#768710: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting Message-ID: <20141109070704.GA16900@xanadu.blop.info> Source: biojava3-live Version: 3.1.0+dfsg-1 Severity: serious Tags: jessie sid User: debian-qa at lists.debian.org Usertags: qa-ftbfs-20141108 qa-ftbfs Justification: FTBFS in jessie on amd64 Hi, During a rebuild of all packages in jessie (in a jessie chroot, not a sid chroot), your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/?BUILDDIR?/biojava3-live-3.1.0+dfsg' > cd biojava3-forester && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-forester/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-forester/classes > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-forester/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 332 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-forester/classes > [javac] Note: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java uses or overrides a deprecated API. > [javac] Note: Recompile with -Xlint:deprecation for details. > [javac] Note: Some input files use unchecked or unsafe operations. > [javac] Note: Recompile with -Xlint:unchecked for details. > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-forester/src/main/resources does not exist. > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-forester.jar > > BUILD SUCCESSFUL > Total time: 12 seconds > cd biojava3-core && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-core/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-core/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-core/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 140 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-core/classes > [copy] Copying 1 file to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-core/classes > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-core.jar > > BUILD SUCCESSFUL > Total time: 5 seconds > cd biojava3-phylo && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-phylo/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-phylo/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-phylo/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 10 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-phylo/classes > [copy] Copying 1 file to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-phylo/classes > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-phylo.jar > > BUILD SUCCESSFUL > Total time: 2 seconds > cd biojava3-alignment && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-alignment/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-alignment/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-alignment/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 66 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-alignment/classes > [copy] Copying 20 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-alignment/classes > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-alignment.jar > > BUILD SUCCESSFUL > Total time: 4 seconds > cd biojava3-aa-prop && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-aa-prop/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-aa-prop/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 31 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/xml/package-info.class > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/profeat/convertor/package-info.class > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/package-info.class > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/profeat/package-info.class > [copy] Copying 10 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-aa-prop.jar > > BUILD SUCCESSFUL > Total time: 3 seconds > cd biojava3-genome && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-genome/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-genome/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-genome/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 27 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-genome/classes > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-genome/src/main/resources does not exist. > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-genome.jar > > BUILD SUCCESSFUL > Total time: 3 seconds > cd biojava3-sequencing && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-sequencing/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-sequencing/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-sequencing/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 19 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-sequencing/classes > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-sequencing/classes/org/biojava3/sequencing/io/fastq/package-info.class > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-sequencing/src/main/resources does not exist. > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-sequencing.jar > > BUILD SUCCESSFUL > Total time: 2 seconds > cd biojava3-structure && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 342 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure/classes > [javac] Note: Some input files use or override a deprecated API. > [javac] Note: Recompile with -Xlint:deprecation for details. > [javac] Note: Some input files use unchecked or unsafe operations. > [javac] Note: Recompile with -Xlint:unchecked for details. > [copy] Copying 63 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure/classes > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-structure.jar > > BUILD SUCCESSFUL > Total time: 10 seconds > cd biojava3-structure-gui && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure-gui/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure-gui/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure-gui/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 109 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure-gui/classes > [javac] Note: Some input files use unchecked or unsafe operations. > [javac] Note: Recompile with -Xlint:unchecked for details. > [copy] Copying 48 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure-gui/classes > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-structure-gui.jar > > BUILD SUCCESSFUL > Total time: 6 seconds > cd biojava3-modfinder && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-modfinder/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-modfinder/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-modfinder/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 21 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-modfinder/classes > [copy] Copying 1 file to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-modfinder/classes > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-modfinder.jar > > BUILD SUCCESSFUL > Total time: 2 seconds > cd biojava3-protein-disorder && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-protein-disorder/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-protein-disorder/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-protein-disorder/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 13 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-protein-disorder/classes > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-protein-disorder/classes/org/biojava3/data/sequence/package-info.class > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-protein-disorder/classes/org/biojava3/ronn/package-info.class > [copy] Copying 10 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-protein-disorder/classes > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-protein-disorder.jar > > BUILD SUCCESSFUL > Total time: 2 seconds > cd biojava3-ws && ant jar > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-ws/build.xml > > compile: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-ws/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-ws/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 20 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-ws/classes > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-ws/src/main/resources does not exist. > > jar: > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-ws.jar > > BUILD SUCCESSFUL > Total time: 2 seconds > # make doc > rm -rf biojavadoc > mkdir biojavadoc > cp -r biojava3-*/src biojavadoc/ > sed -e 's/BJLIB/biojava/g' debian/build.xml > biojavadoc/build.xml > cd biojavadoc && ant javadocs > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/build.xml > > javadocs: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/javadoc > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/doc/biojava > [javadoc] Generating Javadoc > [javadoc] Javadoc execution > [javadoc] Loading source files for package org.biojava.bio.structure... > [javadoc] Loading source files for package org.biojava.bio.structure.align... > [javadoc] Loading source files for package org.biojava.bio.structure.align.ce... > [javadoc] Loading source files for package org.biojava.bio.structure.align.client... > [javadoc] Loading source files for package org.biojava.bio.structure.align.events... > [javadoc] Loading source files for package org.biojava.bio.structure.align.fatcat... > [javadoc] Loading source files for package org.biojava.bio.structure.align.fatcat.calc... > [javadoc] Loading source files for package org.biojava.bio.structure.align.gui... > [javadoc] Loading source files for package org.biojava.bio.structure.align.gui.aligpanel... > [javadoc] Loading source files for package org.biojava.bio.structure.align.gui.autosuggest... > [javadoc] Loading source files for package org.biojava.bio.structure.align.gui.jmol... > [javadoc] Loading source files for package org.biojava.bio.structure.align.helper... > [javadoc] Loading source files for package org.biojava.bio.structure.align.model... > [javadoc] Loading source files for package org.biojava.bio.structure.align.pairwise... > [javadoc] Loading source files for package org.biojava.bio.structure.align.seq... > [javadoc] Loading source files for package org.biojava.bio.structure.align.util... > [javadoc] Loading source files for package org.biojava.bio.structure.align.webstart... > [javadoc] Loading source files for package org.biojava.bio.structure.align.xml... > [javadoc] Loading source files for package org.biojava.bio.structure.asa... > [javadoc] Loading source files for package org.biojava.bio.structure.cath... > [javadoc] Loading source files for package org.biojava.bio.structure.domain... > [javadoc] Loading source files for package org.biojava.bio.structure.domain.pdp... > [javadoc] Loading source files for package org.biojava.bio.structure.gui... > [javadoc] Loading source files for package org.biojava.bio.structure.gui.events... > [javadoc] Loading source files for package org.biojava.bio.structure.gui.util... > [javadoc] Loading source files for package org.biojava.bio.structure.gui.util.color... > [javadoc] Loading source files for package org.biojava.bio.structure.io... > [javadoc] Loading source files for package org.biojava.bio.structure.io.mmcif... > [javadoc] Loading source files for package org.biojava.bio.structure.io.mmcif.chem... > [javadoc] Loading source files for package org.biojava.bio.structure.io.mmcif.model... > [javadoc] Loading source files for package org.biojava.bio.structure.io.sifts... > [javadoc] Loading source files for package org.biojava.bio.structure.io.util... > [javadoc] Loading source files for package org.biojava.bio.structure.jama... > [javadoc] Loading source files for package org.biojava.bio.structure.math... > [javadoc] Loading source files for package org.biojava.bio.structure.quaternary... > [javadoc] Loading source files for package org.biojava.bio.structure.quaternary.io... > [javadoc] Loading source files for package org.biojava.bio.structure.rcsb... > [javadoc] Loading source files for package org.biojava.bio.structure.scop... > [javadoc] Loading source files for package org.biojava.bio.structure.scop.server... > [javadoc] Loading source files for package org.biojava.bio.structure.secstruc... > [javadoc] Loading source files for package org.biojava.bio.structure.server... > [javadoc] Loading source files for package org.biojava3.aaproperties... > [javadoc] Loading source files for package org.biojava3.aaproperties.profeat... > [javadoc] Loading source files for package org.biojava3.aaproperties.profeat.convertor... > [javadoc] Loading source files for package org.biojava3.aaproperties.xml... > [javadoc] Loading source files for package org.biojava3.alignment... > [javadoc] Loading source files for package org.biojava3.alignment.aaindex... > [javadoc] Loading source files for package org.biojava3.alignment.io... > [javadoc] Loading source files for package org.biojava3.alignment.routines... > [javadoc] Loading source files for package org.biojava3.alignment.template... > [javadoc] Loading source files for package org.biojava3.core.exceptions... > [javadoc] Loading source files for package org.biojava3.core.sequence... > [javadoc] Loading source files for package org.biojava3.core.sequence.compound... > [javadoc] Loading source files for package org.biojava3.core.sequence.edits... > [javadoc] Loading source files for package org.biojava3.core.sequence.features... > [javadoc] Loading source files for package org.biojava3.core.sequence.io... > [javadoc] Loading source files for package org.biojava3.core.sequence.io.template... > [javadoc] Loading source files for package org.biojava3.core.sequence.io.util... > [javadoc] Loading source files for package org.biojava3.core.sequence.loader... > [javadoc] Loading source files for package org.biojava3.core.sequence.location... > [javadoc] Loading source files for package org.biojava3.core.sequence.location.template... > [javadoc] Loading source files for package org.biojava3.core.sequence.storage... > [javadoc] Loading source files for package org.biojava3.core.sequence.template... > [javadoc] Loading source files for package org.biojava3.core.sequence.transcription... > [javadoc] Loading source files for package org.biojava3.core.sequence.views... > [javadoc] Loading source files for package org.biojava3.core.util... > [javadoc] Loading source files for package org.biojava3.data.sequence... > [javadoc] Loading source files for package org.biojava3.genome... > [javadoc] Loading source files for package org.biojava3.genome.homology... > [javadoc] Loading source files for package org.biojava3.genome.parsers.cytoband... > [javadoc] Loading source files for package org.biojava3.genome.parsers.geneid... > [javadoc] Loading source files for package org.biojava3.genome.parsers.genename... > [javadoc] Loading source files for package org.biojava3.genome.parsers.gff... > [javadoc] Loading source files for package org.biojava3.genome.query... > [javadoc] Loading source files for package org.biojava3.genome.uniprot... > [javadoc] Loading source files for package org.biojava3.genome.util... > [javadoc] Loading source files for package org.biojava3.ontology... > [javadoc] Loading source files for package org.biojava3.ontology.io... > [javadoc] Loading source files for package org.biojava3.ontology.obo... > [javadoc] Loading source files for package org.biojava3.ontology.utils... > [javadoc] Loading source files for package org.biojava3.phylo... > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > [javadoc] * @author Kalle N???slund (docs) > [javadoc] ^ > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > [javadoc] * @author Kalle N???slund (docs) > [javadoc] ^ > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > [javadoc] * @author Kalle N???slund (docs) > [javadoc] ^ > [javadoc] Loading source files for package org.biojava3.protmod... > [javadoc] Loading source files for package org.biojava3.protmod.io... > [javadoc] Loading source files for package org.biojava3.protmod.structure... > [javadoc] Loading source files for package org.biojava3.ronn... > [javadoc] Loading source files for package org.biojava3.sequencing.io.fastq... > [javadoc] Loading source files for package org.biojava3.structure... > [javadoc] Loading source files for package org.biojava3.structure.gui... > [javadoc] Loading source files for package org.biojava3.structure.validation... > [javadoc] Loading source files for package org.biojava3.survival.cox... > [javadoc] Loading source files for package org.biojava3.survival.cox.comparators... > [javadoc] Loading source files for package org.biojava3.survival.cox.matrix... > [javadoc] Loading source files for package org.biojava3.survival.cox.stats... > [javadoc] Loading source files for package org.biojava3.survival.data... > [javadoc] Loading source files for package org.biojava3.survival.kaplanmeier.figure... > [javadoc] Loading source files for package org.biojava3.survival.kaplanmeier.metadata... > [javadoc] Loading source files for package org.biojava3.ws.alignment... > [javadoc] Loading source files for package org.biojava3.ws.alignment.qblast... > [javadoc] Loading source files for package org.biojava3.ws.hmmer... > [javadoc] Loading source files for package org.forester.analysis... > [javadoc] Loading source files for package org.forester.application... > [javadoc] Loading source files for package org.forester.archaeopteryx... > [javadoc] Loading source files for package org.forester.archaeopteryx.phylogeny.data... > [javadoc] Loading source files for package org.forester.archaeopteryx.tools... > [javadoc] Loading source files for package org.forester.archaeopteryx.webservices... > [javadoc] Loading source files for package org.forester.datastructures... > [javadoc] Loading source files for package org.forester.development... > [javadoc] Loading source files for package org.forester.evoinference... > [javadoc] Loading source files for package org.forester.evoinference.distance... > [javadoc] Loading source files for package org.forester.evoinference.matrix.character... > [javadoc] Loading source files for package org.forester.evoinference.matrix.distance... > [javadoc] Loading source files for package org.forester.evoinference.parsimony... > [javadoc] Loading source files for package org.forester.evoinference.tools... > [javadoc] Loading source files for package org.forester.go... > [javadoc] Loading source files for package org.forester.go.etc... > [javadoc] Loading source files for package org.forester.io.parsers... > [javadoc] Loading source files for package org.forester.io.parsers.nexus... > [javadoc] Loading source files for package org.forester.io.parsers.nhx... > [javadoc] Loading source files for package org.forester.io.parsers.phyloxml... > [javadoc] Loading source files for package org.forester.io.parsers.phyloxml.data... > [javadoc] Loading source files for package org.forester.io.parsers.tol... > [javadoc] Loading source files for package org.forester.io.parsers.util... > [javadoc] Loading source files for package org.forester.io.writers... > [javadoc] Loading source files for package org.forester.msa... > [javadoc] Loading source files for package org.forester.pccx... > [javadoc] Loading source files for package org.forester.phylogeny... > [javadoc] Loading source files for package org.forester.phylogeny.data... > [javadoc] Loading source files for package org.forester.phylogeny.factories... > [javadoc] Loading source files for package org.forester.phylogeny.iterators... > [javadoc] Loading source files for package org.forester.protein... > [javadoc] Loading source files for package org.forester.sdi... > [javadoc] Loading source files for package org.forester.sequence... > [javadoc] Loading source files for package org.forester.species... > [javadoc] Loading source files for package org.forester.surfacing... > [javadoc] Loading source files for package org.forester.test... > [javadoc] Loading source files for package org.forester.test.examples... > [javadoc] Loading source files for package org.forester.tools... > [javadoc] Loading source files for package org.forester.util... > [javadoc] Loading source files for package org.forester.ws.hmmer... > [javadoc] Loading source files for package org.forester.ws.seqdb... > [javadoc] Loading source files for package org.forester.ws.uniprot... > [javadoc] Loading source files for package org.forester.ws.wabi... > [javadoc] 3 errors > > BUILD SUCCESSFUL > Total time: 4 seconds > rm -rf biojavadoc > make[1]: Leaving directory '/?BUILDDIR?/biojava3-live-3.1.0+dfsg' > jh_build > debian/rules override_dh_auto_test > make[1]: Entering directory '/?BUILDDIR?/biojava3-live-3.1.0+dfsg' > cd biojava3-core && ant test > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-core/build.xml > > compile-test: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-core/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-core/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 17 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-core/classes > [copy] Copying 8 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-core/classes > [copy] Copying 140 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-core/classes > > test: > [junit] Running org.biojava3.core.sequence.DNATest > [junit] Testsuite: org.biojava3.core.sequence.DNATest > [junit] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.353 sec > [junit] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.353 sec > [junit] > [junit] Testcase: sequenceEquality took 0.013 sec > [junit] Testcase: subSequence took 0.004 sec > [junit] Testcase: singleCompoundSequence took 0.002 sec > [junit] Testcase: translateToRna took 0.037 sec > [junit] Testcase: kmerNonOverlap took 0.002 sec > [junit] Testcase: twoBit took 0 sec > [junit] Testcase: composition took 0.001 sec > [junit] Testcase: fourBit took 0.004 sec > [junit] Testcase: complement took 0.001 sec > [junit] Testcase: kmerOverlapExceedingSequenceLength took 0.001 sec > [junit] Testcase: at took 0 sec > [junit] Testcase: gc took 0 sec > [junit] Testcase: basesEqual took 0 sec > [junit] Testcase: bogusSequence took 0 sec > [junit] Testcase: kmerOverlap took 0 sec > [junit] Testcase: reverseComplement took 0.001 sec > [junit] Testcase: reverse took 0.001 sec > [junit] Testcase: respectCase took 0 sec > [junit] Testcase: basesEquivalent took 0 sec > [junit] Testcase: badTwoBit took 0 sec > [junit] Running org.biojava3.core.sequence.EditSequenceTest > [junit] Testsuite: org.biojava3.core.sequence.EditSequenceTest > [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec > [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec > [junit] > [junit] Testcase: badSubstitute took 0.015 sec > [junit] Testcase: delete took 0.004 sec > [junit] Testcase: insert took 0 sec > [junit] Testcase: substitute took 0 sec > [junit] Running org.biojava3.core.sequence.JoiningSequenceReaderTest > [junit] Testsuite: org.biojava3.core.sequence.JoiningSequenceReaderTest > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 sec > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 sec > [junit] > [junit] Testcase: empty took 0.014 sec > [junit] Testcase: canScan took 0 sec > [junit] Running org.biojava3.core.sequence.MultipleSequenceAlignmentTest > [junit] Testsuite: org.biojava3.core.sequence.MultipleSequenceAlignmentTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec > [junit] > [junit] Testcase: testGetCompoundsAt took 0.017 sec > [junit] Running org.biojava3.core.sequence.SequenceViewTest > [junit] Testsuite: org.biojava3.core.sequence.SequenceViewTest > [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec > [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec > [junit] > [junit] Testcase: testLastIndexOf took 0.016 sec > [junit] Testcase: testGetCompoundAt took 0 sec > [junit] Testcase: testInverse took 0 sec > [junit] Running org.biojava3.core.sequence.TranslationTest > [junit] Testsuite: org.biojava3.core.sequence.TranslationTest > [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.533 sec > [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.533 sec > [junit] > [junit] Testcase: translateN took 0.045 sec > [junit] Testcase: basicTranslation took 0.002 sec > [junit] Testcase: translateBrca2 took 0.356 sec > [junit] Testcase: getUniversal took 0.001 sec > [junit] Testcase: translateInternalStops took 0.016 sec > [junit] Testcase: multiFrameTranslation took 0.004 sec > [junit] Testcase: translateInitMet took 0 sec > [junit] Testcase: lowerCases took 0 sec > [junit] Testcase: testHashCollision took 0.006 sec > [junit] Testcase: translateBrca2ExonOne took 0 sec > [junit] Running org.biojava3.core.sequence.compound.AmbiguityDNACompoundTest > [junit] Testsuite: org.biojava3.core.sequence.compound.AmbiguityDNACompoundTest > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.035 sec > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.035 sec > [junit] > [junit] Testcase: testAmbiguity took 0.002 sec > [junit] Testcase: testBasicAmbiguity took 0 sec > [junit] Running org.biojava3.core.sequence.io.CasePreservingProteinSequenceCreatorTest > [junit] Testsuite: org.biojava3.core.sequence.io.CasePreservingProteinSequenceCreatorTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec > [junit] > [junit] Testcase: testConstructor took 0.012 sec > [junit] Running org.biojava3.core.sequence.io.FastaReaderTest > [junit] Testsuite: org.biojava3.core.sequence.io.FastaReaderTest > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.239 sec > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.239 sec > [junit] ------------- Standard Output --------------- > [junit] process > [junit] process(int) > [junit] ------------- ---------------- --------------- > [junit] > [junit] Testcase: testProcess took 0.174 sec > [junit] Testcase: processIntTest took 0.042 sec > [junit] Running org.biojava3.core.sequence.io.FastaWriterTest > [junit] Testsuite: org.biojava3.core.sequence.io.FastaWriterTest > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec > [junit] > [junit] Testcase: writeBasicFasta took 0.02 sec > [junit] Testcase: writeFastaEqualToLineLength took 0 sec > [junit] Running org.biojava3.core.sequence.io.GenbankCookbookTest > [junit] Testsuite: org.biojava3.core.sequence.io.GenbankCookbookTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.176 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.176 sec > [junit] ------------- Standard Output --------------- > [junit] AAGATGCTCCGTGGAAGGGAGCCGAGCGGTGGGCAGAGGCTGAGTCCCCGATAACGAGCGCCTCACATTTCCGTGGCATTCCCATTTGCTAGTGCGCTGCTGCGGCCGCACGCCTGATTGATATATGACTGCAATGGCACTTTTCCATTTGACATTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCCCTCTCTCTCTCCCTCTCTCTCTCTCCCTGTGTCGCTTAAACAACAGTCCTAACTTTTGTGTGTTGCAAATATAAAAGGCAAGCCATGTGACAGAGGGACAGAAGAACAAAAGCATTTGGAAGTAACAGGACCTCTTTCTAGCTCTCAGAAAAGTCTGAGAAGAAAGGAGCCCTGCGTTCCCCTAAGCTGTGCAGCAGATACTGTGATGATGGATTGCAAGTGCAAAGAGTAAGACAAAACTCCAGCACATAAAGGACAATGACAACCAGAAAGCTTCAGCCCGATCCTGCCCTTTCCTTGAACGGGACTGGATCCTAGGAGGTGAAGCCATTTCCAATTTTTTGTCCTCTGCCTCCCTCTGCTGTTCTTCTAGAGAAGTTTTTCCTTACAACAATGAGAAAACATGTACTAGCTGCATCCTTTTCTATGCTCTCCCTGCTGGTGATAATGGGAGATACAGACAGTAAAACGGACAGCTCATTCATAATGGACTCGGACCCTCGACGCTGCATGAGGCACCACTATGTGGATTCTATCAGTCACCCATTGTACAAGTGTAGCTCAAAGATGGTGCTCCTGGCCAGGTGCGAGGGGCACTGCAGCCAGGCGTCACGCTCCGAGCCTTTGGTGTCGTTCAGCACTGTCCTCAAGCAACCCTTCCGTTCCTCCTGTCACTGCTGCCGGCCCCAGACTTCCAAGCTGAAGGCACTGCGGCTGCGATGCTCAGGGGGCATGCGACTCACTGCCACCTACCGGTACATCCTCTCCTGTCACTGCGAGGAATGCAATTCCTGAGGCCCGCTGCTGTGTGTGGCTTCTGGATGGGACAACTGTAGAGGCAGTTCGACCAGCCAGGGAAAGACTGGCAAGAAAAGAGTTAAGGCAAAAAAGGATGCAACAATTCTCCCGGGACTCTGCATATTCTAGTAATAAAGACTCTACATGCTTGTTGACAGAGAGAGATACTCTGGGAACTTCTTTGCAGTTCCCATCTCCTTTCTCTGGTACAATTTCTTTTGGTTCATTTTCAGATTCAGGCATTTTCCCCCTTGGCTCTCAATGCTGTTTGGGTTTCCAACAATTCAGCATTAGTGGGAAAAAGTGGGCCCTCATACACAAGCGTGTCAGGCTGTCAGTGTTTGGTGCACGCTGGGGAAGAATTTACTTTGGAAAGTAGAAAAGCCCAGCTTTTCCTGGGACATCTTCTGTTATTGTTGATGTTTTTTTTTACCTTGTCATTTTGGTCTAAGGTTGCCATTGCTGCTAAAGGTTACCGATTTCAAAGTCCAGATACCAAGCATGTGGATATGTTTAGCTACGTTTACTCACAGCCAGCGAACTGACATTAAAATAACTAACAAACAGATTCTTTTATGTGATGCTGGAACTCTTGACAGCTATAATTATTATTCAGAAATGACTTTTTGAAAGTAAAAGCAGCATAAAGAATTTGTCACAGGAAGGCTGTCTCAGATAAATTATGGTAAAATTTTGTAAGGGAGCAGACTTTTAAAGACTTGCACAAATACGGATCCTGCACTGACTCTGGAAAAGGCATATATGTACTAGTGGCATGGAGAATGCACCATACTCATGCATGCAAATTAGACAACCAAGTATGAATCTATTTGTGGGTGTGCTATAGCTTTAGCCGTGTCACGGGCATCATTCTCTAATATCCACTTGTCCATGTGAAACATGTTGCCAAAATGGTGGCCTGGCTTGTCTTCTGAACGTTTGGTTCAAATGTGTTTTGGTCCTGGAGGCTCAAATTTTGAGTTATTCCCACGTTTTGAAATAAAAAGAGTATATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA > [junit] MRKHVLAASFSMLSLLVIMGDTDSKTDSSFIMDSDPRRCMRHHYVDSISHPLYKCSSKMVLLARCEGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATYRYILSCHCEECNS > [junit] {NM_000266=AAGATGCTCCGTGGAAGGGAGCCGAGCGGTGGGCAGAGGCTGAGTCCCCGATAACGAGCGCCTCACATTTCCGTGGCATTCCCATTTGCTAGTGCGCTGCTGCGGCCGCACGCCTGATTGATATATGACTGCAATGGCACTTTTCCATTTGACATTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCCCTCTCTCTCTCCCTCTCTCTCTCTCCCTGTGTCGCTTAAACAACAGTCCTAACTTTTGTGTGTTGCAAATATAAAAGGCAAGCCATGTGACAGAGGGACAGAAGAACAAAAGCATTTGGAAGTAACAGGACCTCTTTCTAGCTCTCAGAAAAGTCTGAGAAGAAAGGAGCCCTGCGTTCCCCTAAGCTGTGCAGCAGATACTGTGATGATGGATTGCAAGTGCAAAGAGTAAGACAAAACTCCAGCACATAAAGGACAATGACAACCAGAAAGCTTCAGCCCGATCCTGCCCTTTCCTTGAACGGGACTGGATCCTAGGAGGTGAAGCCATTTCCAATTTTTTGTCCTCTGCCTCCCTCTGCTGTTCTTCTAGAGAAGTTTTTCCTTACAACAATGAGAAAACATGTACTAGCTGCATCCTTTTCTATGCTCTCCCTGCTGGTGATAATGGGAGATACAGACAGTAAAACGGACAGCTCATTCATAATGGACTCGGACCCTCGACGCTGCATGAGGCACCACTATGTGGATTCTATCAGTCACCCATTGTACAAGTGTAGCTCAAAGATGGTGCTCCTGGCCAGGTGCGAGGGGCACTGCAGCCAGGCGTCACGCTCCGAGCCTTTGGTGTCGTTCAGCACTGTCCTCAAGCAACCCTTCCGTTCCTCCTGTCACTGCTGCCGGCCCCAGACTTCCAAGCTGAAGGCACTGCGGCTGCGATGCTCAGGGGGCATGCGACTCACTGCCACCTACCGGTACATCCTCTCCTGTCACTGCGAGGAATGCAATTCCTGAGGCCCGCTGCTGTGTGTGGCTTCTGGATGGGACAACTGTAGAGGCAGTTCGACCAGCCAGGGAAAGACTGGCAAGAAAAGAGTTAAGGCAAAAAAGGATGCAACAATTCTCCCGGGACTCTGCATATTCTAGTAATAAAGACTCTACATGCTTGTTGACAGAGAGAGATACTCTGGGAACTTCTTTGCAGTTCCCATCTCCTTTCTCTGGTACAATTTCTTTTGGTTCATTTTCAGATTCAGGCATTTTCCCCCTTGGCTCTCAATGCTGTTTGGGTTTCCAACAATTCAGCATTAGTGGGAAAAAGTGGGCCCTCATACACAAGCGTGTCAGGCTGTCAGTGTTTGGTGCACGCTGGGGAAGAATTTACTTTGGAAAGTAGAAAAGCCCAGCTTTTCCTGGGACATCTTCTGTTATTGTTGATGTTTTTTTTTACCTTGTCATTTTGGTCTAAGGTTGCCATTGCTGCTAAAGGTTACCGATTTCAAAGTCCAGATACCAAGCATGTGGATATGTTTAGCTACGTTTACTCACAGCCAGCGAACTGACATTAAAATAACTAACAAACAGATTCTTTTATGTGATGCTGGAACTCTTGACAGCTATAATTATTATTCAGAAATGACTTTTTGAAAGTAAAAGCAGCATAAAGAATTTGTCACAGGAAGGCTGTCTCAGATAAATTATGGTAAAATTTTGTAAGGGAGCAGACTTTTAAAGACTTGCACAAATACGGATCCTGCACTGACTCTGGAAAAGGCATATATGTACTAGTGGCATGGAGAATGCACCATACTCATGCATGCAAATTAGACAACCAAGTATGAATCTATTTGTGGGTGTGCTATAGCTTTAGCCGTGTCACGGGCATCATTCTCTAATATCCACTTGTCCATGTGAAACATGTTGCCAAAATGGTGGCCTGGCTTGTCTTCTGAACGTTTGGTTCAAATGTGTTTTGGTCCTGGAGGCTCAAATTTTGAGTTATTCCCACGTTTTGAAATAAAAAGAGTATATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA} > [junit] {NP_000257=MRKHVLAASFSMLSLLVIMGDTDSKTDSSFIMDSDPRRCMRHHYVDSISHPLYKCSSKMVLLARCEGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATYRYILSCHCEECNS} > [junit] ------------- ---------------- --------------- > [junit] > [junit] Testcase: testProcess took 0.154 sec > [junit] Running org.biojava3.core.sequence.io.GenbankReaderTest > [junit] Testsuite: org.biojava3.core.sequence.io.GenbankReaderTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.134 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.134 sec > [junit] ------------- Standard Output --------------- > [junit] process protein > [junit] process DNA > [junit] ------------- ---------------- --------------- > [junit] > [junit] Testcase: testProcess took 0.112 sec > [junit] Running org.biojava3.core.sequence.io.GenbankWriterTest > [junit] Testsuite: org.biojava3.core.sequence.io.GenbankWriterTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.163 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.163 sec > [junit] ------------- Standard Output --------------- > [junit] DIVISION:UNK linear > [junit] ------------- ---------------- --------------- > [junit] > [junit] Testcase: testProcess took 0.157 sec > [junit] Running org.biojava3.core.sequence.io.GenericFastaHeaderParserTest > [junit] Testsuite: org.biojava3.core.sequence.io.GenericFastaHeaderParserTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec > [junit] ------------- Standard Output --------------- > [junit] parseHeader > [junit] ------------- ---------------- --------------- > [junit] > [junit] Testcase: testParseHeader took 0.013 sec > [junit] Running org.biojava3.core.sequence.location.LocationParserTest > [junit] Testsuite: org.biojava3.core.sequence.location.LocationParserTest > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec > [junit] > [junit] Testcase: moreComplex took 0.009 sec > [junit] Testcase: basicLocationTests took 0.002 sec > [junit] Running org.biojava3.core.sequence.location.LocationTest > [junit] Testsuite: org.biojava3.core.sequence.location.LocationTest > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 sec > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 sec > [junit] > [junit] Testcase: testWithStrandSwitch took 0.02 sec > [junit] Testcase: modulateCircular took 0.001 sec > [junit] Testcase: testStrandFlip took 0 sec > [junit] Testcase: testBasicCircularLocation took 0.001 sec > [junit] Testcase: badLocations took 0.001 sec > [junit] Testcase: completePasses took 0 sec > [junit] Testcase: testSubLocations took 0.002 sec > > BUILD SUCCESSFUL > Total time: 10 seconds > cd biojava3-alignment && ant test > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-alignment/build.xml > > compile-test: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-alignment/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-alignment/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 24 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-alignment/classes > [copy] Copying 9 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-alignment/classes > [copy] Copying 66 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-alignment/classes > > test: > [junit] Running org.biojava3.alignment.FractionalIdentityScorerTest > [junit] Testsuite: org.biojava3.alignment.FractionalIdentityScorerTest > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.066 sec > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.066 sec > [junit] > [junit] Testcase: testGetQuery took 0.026 sec > [junit] Testcase: testGetScore took 0.019 sec > [junit] Testcase: testFractionalIdentityScorerPairwiseSequenceAlignerOfSC took 0 sec > [junit] Testcase: testGetMinScore took 0 sec > [junit] Testcase: testFractionalIdentityScorerSequencePairOfSC took 0 sec > [junit] Testcase: testGetTarget took 0 sec > [junit] Testcase: testGetMaxScore took 0.001 sec > [junit] Running org.biojava3.alignment.FractionalSimilarityScorerTest > [junit] Testsuite: org.biojava3.alignment.FractionalSimilarityScorerTest > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 sec > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 sec > [junit] > [junit] Testcase: testGetQuery took 0.026 sec > [junit] Testcase: testGetScore took 0.019 sec > [junit] Testcase: testFractionalSimilarityScorerSequencePairOfSC took 0.001 sec > [junit] Testcase: testGetMinScore took 0.001 sec > [junit] Testcase: testFractionalSimilarityScorerPairwiseSequenceAlignerOfSC took 0 sec > [junit] Testcase: testGetTarget took 0 sec > [junit] Testcase: testGetMaxScore took 0.002 sec > [junit] Running org.biojava3.alignment.GuideTreeTest > [junit] Testsuite: org.biojava3.alignment.GuideTreeTest > [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.134 sec > [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.134 sec > [junit] > [junit] Testcase: testGuideTree took 0.078 sec > [junit] Testcase: testToString took 0.003 sec > [junit] Testcase: testGetScoreMatrix took 0.004 sec > [junit] Testcase: testGetRoot took 0.018 sec > [junit] Testcase: testGetSequences took 0.003 sec > [junit] Testcase: testGetDistanceMatrix took 0.003 sec > [junit] Testcase: testGetAllPairsScores took 0.004 sec > [junit] Testcase: testIterator took 0.003 sec > [junit] Running org.biojava3.alignment.LocalAlignmentTest > [junit] Testsuite: org.biojava3.alignment.LocalAlignmentTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.082 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.082 sec > [junit] > [junit] Testcase: shouldAllowZeroLengthMatches took 0.066 sec > [junit] Running org.biojava3.alignment.NeedlemanWunschTest > [junit] Testsuite: org.biojava3.alignment.NeedlemanWunschTest > [junit] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.127 sec > [junit] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.127 sec > [junit] > [junit] Testcase: testGetSubstitutionMatrix took 0.025 sec > [junit] Testcase: testGetGapPenalty took 0 sec > [junit] Testcase: testGetComputationTime took 0.019 sec > [junit] Testcase: should_align_middle_anchor took 0.029 sec > [junit] Testcase: testGetQuery took 0.001 sec > [junit] Testcase: testGetScore took 0.001 sec > [junit] Testcase: testNeedlemanWunsch took 0.001 sec > [junit] Testcase: should_align_all_anchored took 0.001 sec > [junit] Testcase: testGetScoreMatrix took 0.001 sec > [junit] Testcase: testGetPair took 0.001 sec > [junit] Testcase: should_align_multiple_anchors took 0.001 sec > [junit] Testcase: testAnchoredDNAAlignment took 0.003 sec > [junit] Testcase: testGetProfile took 0.001 sec > [junit] Testcase: testGetMinScore took 0 sec > [junit] Testcase: should_align_ending_anchor took 0.001 sec > [junit] Testcase: testIsStoringScoreMatrix took 0.001 sec > [junit] Testcase: testGetScoreMatrixAsString took 0.015 sec > [junit] Testcase: should_align_starting_anchor took 0.001 sec > [junit] Testcase: anchors_should_not_change_score took 0 sec > [junit] Testcase: testGetTarget took 0 sec > [junit] Testcase: testGetMaxScore took 0.001 sec > [junit] Running org.biojava3.alignment.SimpleAlignedSequenceTest > [junit] Testsuite: org.biojava3.alignment.SimpleAlignedSequenceTest > [junit] Tests run: 33, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.06 sec > [junit] Tests run: 33, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.06 sec > [junit] > [junit] Testcase: testGetIndexOf took 0.012 sec > [junit] Testcase: testGetSequenceIndexAtOutOfBounds took 0.001 sec > [junit] Testcase: testGetSequenceIndexAtOutOfBounds2 took 0.001 sec > [junit] Testcase: testGetSequenceIndexAtOutOfBounds3 took 0 sec > [junit] Testcase: testGetSequenceIndexAtOutOfBounds4 took 0.001 sec > [junit] Testcase: testGetNumGaps took 0 sec > [junit] Testcase: testGetStart took 0 sec > [junit] Testcase: testGetSequenceIndexAt took 0 sec > [junit] Testcase: testGetAccession took 0 sec > [junit] Testcase: testToString took 0.001 sec > [junit] Testcase: testSimpleAlignedSequenceLong took 0 sec > [junit] Testcase: testCountCompounds took 0.001 sec > [junit] Testcase: testGetAlignmentIndexAt took 0 sec > [junit] Testcase: testGetAlignmentIndexAtOutOfBounds took 0.001 sec > [junit] Testcase: testGetAlignmentIndexAtOutOfBounds2 took 0 sec > [junit] Testcase: testGetAlignmentIndexAtOutOfBounds3 took 0.001 sec > [junit] Testcase: testGetAlignmentIndexAtOutOfBounds4 took 0 sec > [junit] Testcase: testGetSubSequence took 0 sec > [junit] SKIPPED > [junit] Testcase: testGetAsList took 0.001 sec > [junit] Testcase: testGetOriginalSequence took 0 sec > [junit] Testcase: testGetCompoundAt took 0.001 sec > [junit] Testcase: testGetLength took 0 sec > [junit] Testcase: testIsCircular took 0 sec > [junit] Testcase: testGetEnd took 0 sec > [junit] Testcase: testSimpleAlignedSequenceLocal took 0 sec > [junit] Testcase: testSimpleAlignedSequenceShort took 0 sec > [junit] Testcase: testGetOverlapCount took 0 sec > [junit] Testcase: testGetCompoundSet took 0 sec > [junit] Testcase: testGetLocationInAlignment took 0.001 sec > [junit] Testcase: testIterator took 0.001 sec > [junit] Testcase: testGetSequenceAsString took 0 sec > [junit] Testcase: testGetLastIndexOf took 0 sec > [junit] Testcase: testGetSequenceAsStringIntegerIntegerStrand took 0.002 sec > [junit] Running org.biojava3.alignment.SimpleGapPenaltyTest > [junit] Testsuite: org.biojava3.alignment.SimpleGapPenaltyTest > [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 sec > [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 sec > [junit] > [junit] Testcase: testOpenPenalty took 0.003 sec > [junit] Testcase: testType took 0 sec > [junit] Testcase: testExtensionPenalty took 0 sec > [junit] Testcase: testSimpleGapPenaltyShortShort took 0 sec > [junit] Testcase: testSimpleGapPenalty took 0 sec > [junit] Running org.biojava3.alignment.SimpleProfilePairTest > [junit] Testsuite: org.biojava3.alignment.SimpleProfilePairTest > [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.071 sec > [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.071 sec > [junit] > [junit] Testcase: testGetQuery took 0.049 sec > [junit] Testcase: testGetTarget took 0.001 sec > [junit] Testcase: testSimpleProfilePair took 0.004 sec > [junit] Running org.biojava3.alignment.SimpleProfileProfileAlignerTest > [junit] Testsuite: org.biojava3.alignment.SimpleProfileProfileAlignerTest > [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.145 sec > [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.145 sec > [junit] > [junit] Testcase: testGetSubstitutionMatrix took 0.048 sec > [junit] Testcase: testGetGapPenalty took 0.005 sec > [junit] Testcase: testGetComputationTime took 0.006 sec > [junit] Testcase: testGetQuery took 0.004 sec > [junit] Testcase: testGetScore took 0.006 sec > [junit] Testcase: testGetScoreMatrix took 0.004 sec > [junit] Testcase: testGetPair took 0.005 sec > [junit] Testcase: testGetProfile took 0.003 sec > [junit] Testcase: testGetMinScore took 0.002 sec > [junit] Testcase: testIsStoringScoreMatrix took 0.002 sec > [junit] Testcase: testGetScoreMatrixAsString took 0.028 sec > [junit] Testcase: testSimpleProfileProfileAlignerProfileOfSCProfileOfSCGapPenaltySubstitutionMatrixOfC took 0.003 sec > [junit] Testcase: testSimpleProfileProfileAligner took 0.003 sec > [junit] Testcase: testGetTarget took 0.002 sec > [junit] Testcase: testGetMaxScore took 0.002 sec > [junit] Running org.biojava3.alignment.SimpleProfileTest > [junit] Testsuite: org.biojava3.alignment.SimpleProfileTest > [junit] Tests run: 54, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.149 sec > [junit] Tests run: 54, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.149 sec > [junit] > [junit] Testcase: testGetIndexOf took 0.032 sec > [junit] Testcase: testGetCompoundAtSIntOutOfBounds took 0 sec > [junit] Testcase: testGetAlignedSequenceInt took 0.001 sec > [junit] Testcase: testToStringInt took 0.011 sec > [junit] Testcase: testToString took 0.001 sec > [junit] Testcase: testToStringFormatted took 0.037 sec > [junit] Testcase: testSimpleProfile took 0 sec > [junit] Testcase: testGetSize took 0 sec > [junit] Testcase: testGetAlignedSequenceS took 0 sec > [junit] Testcase: testGetAlignedSequences took 0 sec > [junit] Testcase: testGetOriginalSequences took 0 sec > [junit] Testcase: testGetSubProfile took 0 sec > [junit] SKIPPED > [junit] Testcase: testGetCompoundAtSInt took 0.001 sec > [junit] Testcase: testGetAlignedSequencesSArray took 0.001 sec > [junit] Testcase: testGetIndicesAt took 0.002 sec > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds took 0 sec > [junit] Testcase: testGetAlignedSequencesIntArray took 0.002 sec > [junit] Testcase: testGetCompoundAtIntInt took 0.001 sec > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds took 0 sec > [junit] Testcase: testGetLength took 0 sec > [junit] Testcase: testGetCompoundsAtOutOfBounds took 0 sec > [junit] Testcase: testIsCircular took 0 sec > [junit] Testcase: testGetCompoundsAtOutOfBounds2 took 0.001 sec > [junit] Testcase: testGetCompoundsAtOutOfBounds3 took 0 sec > [junit] Testcase: testGetCompoundsAtOutOfBounds4 took 0 sec > [junit] Testcase: testGetCompoundsAtOutOfBounds5 took 0.001 sec > [junit] Testcase: testGetCompoundsAtOutOfBounds6 took 0 sec > [junit] Testcase: testGetIndicesAtOutOfBounds2 took 0 sec > [junit] Testcase: testGetIndicesAtOutOfBounds3 took 0.001 sec > [junit] Testcase: testGetIndicesAtOutOfBounds4 took 0 sec > [junit] Testcase: testGetIndicesAtOutOfBounds5 took 0 sec > [junit] Testcase: testGetIndicesAtOutOfBounds6 took 0.001 sec > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds2 took 0 sec > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds3 took 0 sec > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds4 took 0 sec > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds5 took 0 sec > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds6 took 0.001 sec > [junit] Testcase: testGetCompoundSet took 0 sec > [junit] Testcase: testGetCompoundsAt took 0 sec > [junit] Testcase: testGetCompoundAtSIntOutOfBounds2 took 0.001 sec > [junit] Testcase: testGetCompoundAtSIntOutOfBounds3 took 0 sec > [junit] Testcase: testGetCompoundAtSIntOutOfBounds4 took 0 sec > [junit] Testcase: testGetCompoundAtSIntOutOfBounds5 took 0.001 sec > [junit] Testcase: testIterator took 0.001 sec > [junit] Testcase: testGetLastIndexOf took 0.002 sec > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds2 took 0 sec > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds3 took 0 sec > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds4 took 0 sec > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds5 took 0 sec > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds6 took 0 sec > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds7 took 0 sec > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds8 took 0 sec > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds9 took 0.001 sec > [junit] Testcase: testGetIndicesAtOutOfBounds took 0 sec > [junit] Running org.biojava3.alignment.SimpleSequencePairTest > [junit] Testsuite: org.biojava3.alignment.SimpleSequencePairTest > [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.072 sec > [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.072 sec > [junit] > [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds took 0.031 sec > [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds2 took 0 sec > [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds3 took 0.001 sec > [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds4 took 0 sec > [junit] Testcase: testGetQuery took 0 sec > [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds took 0.001 sec > [junit] Testcase: testGetIndexInTargetAt took 0 sec > [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds2 took 0 sec > [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds3 took 0.001 sec > [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds4 took 0 sec > [junit] Testcase: testGetCompoundInQueryAtOutOfBounds took 0.001 sec > [junit] Testcase: testGetIndexInQueryAtOutOfBounds took 0 sec > [junit] Testcase: testGetCompoundInQueryAt took 0.001 sec > [junit] Testcase: testGetIndexInQueryAtOutOfBounds2 took 0 sec > [junit] Testcase: testGetIndexInQueryAtOutOfBounds3 took 0.001 sec > [junit] Testcase: testGetIndexInQueryAtOutOfBounds4 took 0.001 sec > [junit] Testcase: testGetIndexInQueryForTargetAt took 0 sec > [junit] Testcase: testGetIndexInTargetAtOutOfBounds took 0 sec > [junit] Testcase: testGetNumIdenticals took 0 sec > [junit] Testcase: testGetIndexInTargetForQueryAt took 0 sec > [junit] Testcase: testGetIndexInTargetAtOutOfBounds2 took 0 sec > [junit] Testcase: testGetIndexInTargetAtOutOfBounds3 took 0 sec > [junit] Testcase: testGetIndexInTargetAtOutOfBounds4 took 0 sec > [junit] Testcase: testGetCompoundInTargetAt took 0 sec > [junit] Testcase: testGetIndexInQueryAt took 0.001 sec > [junit] Testcase: testGetCompoundInQueryAtOutOfBounds2 took 0 sec > [junit] Testcase: testGetCompoundInQueryAtOutOfBounds3 took 0.001 sec > [junit] Testcase: testGetCompoundInQueryAtOutOfBounds4 took 0 sec > [junit] Testcase: testGetTarget took 0 sec > [junit] Testcase: testGetCompoundInTargetAtOutOfBounds took 0 sec > [junit] Testcase: testGetNumSimilars took 0.002 sec > [junit] Testcase: testGetCompoundInTargetAtOutOfBounds2 took 0 sec > [junit] Testcase: testGetCompoundInTargetAtOutOfBounds3 took 0.001 sec > [junit] Testcase: testGetCompoundInTargetAtOutOfBounds4 took 0 sec > [junit] Running org.biojava3.alignment.SimpleSubstitutionMatrixTest > [junit] Testsuite: org.biojava3.alignment.SimpleSubstitutionMatrixTest > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.07 sec > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.07 sec > [junit] > [junit] Testcase: testSimpleSubstitutionMatrixNotFound took 0.006 sec > [junit] Testcase: testSetDescription took 0.013 sec > [junit] Testcase: testToString took 0.008 sec > [junit] Testcase: testCaseEquivalence took 0.001 sec > [junit] Testcase: testSimpleSubstitutionMatrix took 0.008 sec > [junit] Testcase: testSimpleSubstitutionMatrixWrong took 0 sec > [junit] SKIPPED > [junit] Testcase: testSimpleSubstitutionMatrixCompoundSetOfCStringString took 0.002 sec > [junit] Testcase: testSetName took 0.007 sec > [junit] Testcase: testSimpleSubstitutionMatrixCompoundSetOfCShortShort took 0.003 sec > [junit] Running org.biojava3.alignment.SmithWatermanTest > [junit] Testsuite: org.biojava3.alignment.SmithWatermanTest > [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.118 sec > [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.118 sec > [junit] > [junit] Testcase: testGetSubstitutionMatrix took 0.026 sec > [junit] Testcase: testGetGapPenalty took 0 sec > [junit] Testcase: testGetComputationTime took 0.018 sec > [junit] Testcase: testGetQuery took 0.001 sec > [junit] Testcase: testGetScore took 0.002 sec > [junit] Testcase: testGetScoreMatrix took 0.002 sec > [junit] Testcase: testGetPair took 0.004 sec > [junit] Testcase: testSmithWaterman took 0.001 sec > [junit] Testcase: testGetProfile took 0.002 sec > [junit] Testcase: testGetMinScore took 0.001 sec > [junit] Testcase: testIsStoringScoreMatrix took 0 sec > [junit] Testcase: testGetScoreMatrixAsString took 0.036 sec > [junit] Testcase: testSetStoringScoreMatrix took 0 sec > [junit] Testcase: testGetTarget took 0 sec > [junit] Testcase: testGetMaxScore took 0.001 sec > [junit] Running org.biojava3.alignment.routines.AlignerHelperTest > [junit] Testsuite: org.biojava3.alignment.routines.AlignerHelperTest > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec > [junit] > [junit] Testcase: getSubproblems_should_not_allow_repeated_anchors took 0.003 sec > [junit] Testcase: getCuts_should_return_spaced_cuts_when_query_interval_larger_than_cut_size took 0.002 sec > [junit] Testcase: getSubproblems_should_return_score_indicies_of_alignment_subproblems took 0 sec > [junit] Testcase: getSubproblems_should_allow_adjacent_anchors took 0 sec > [junit] Testcase: getCuts_should_return_all_positions_when_cuts_exceeds_query_size took 0 sec > [junit] Testcase: getSubproblems_should_allow_zero_anchors took 0 sec > [junit] Testcase: getCuts_should_not_return_start_position_for_starting_anchor took 0 sec > [junit] Testcase: getSubproblems_should_allow_start_and_end_anchors took 0 sec > [junit] Testcase: getSubproblems_should_not_allow_unalignable_anchors took 0 sec > [junit] Running org.biojava3.alignment.routines.GuanUberbacherTest > [junit] Testsuite: org.biojava3.alignment.routines.GuanUberbacherTest > [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 sec > [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 sec > [junit] > [junit] Testcase: testGetComputationTime took 0.043 sec > [junit] Testcase: testGuanUberbacher took 0 sec > [junit] Testcase: testGetScore took 0.001 sec > [junit] Testcase: testGetPair took 0.004 sec > [junit] Testcase: testGetProfile took 0.001 sec > [junit] Testcase: testGetMinScore took 0.001 sec > [junit] Testcase: should_align_shorter_target took 0.025 sec > [junit] Testcase: should_align_multiple_cuts took 0 sec > [junit] Testcase: testGetMaxScore took 0 sec > [junit] Testcase: should_align_shorter_query took 0.001 sec > > BUILD SUCCESSFUL > Total time: 9 seconds > cd biojava3-aa-prop && ant test > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-aa-prop/build.xml > > compile-test: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-aa-prop/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-aa-prop/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 9 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-aa-prop/classes > [javac] Note: Some input files use or override a deprecated API. > [javac] Note: Recompile with -Xlint:deprecation for details. > [copy] Copying 12 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-aa-prop/classes > [copy] Copying 31 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-aa-prop/classes > > test: > > BUILD SUCCESSFUL > Total time: 2 seconds > # Skip, missing dependency > #cd biojava3-genome && ant test > cd biojava3-phylo && ant test > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-phylo/build.xml > > compile-test: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-phylo/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-phylo/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 1 source file to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-phylo/classes > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-phylo/src/test/resources does not exist. > [copy] Copying 10 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-phylo/classes > > test: > [junit] Running org.biojava3.phylo.AppTest > [junit] Testsuite: org.biojava3.phylo.AppTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec > [junit] > [junit] Testcase: testApp took 0.001 sec > > BUILD SUCCESSFUL > Total time: 2 seconds > # Native errors may cause issue on NFS...; skipping > #cd biojava3-sequencing && ant test > #cd biojava3-modfinder && ant test > cd biojava3-protein-disorder && ant test > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-protein-disorder/build.xml > > compile-test: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-protein-disorder/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-protein-disorder/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 3 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-protein-disorder/classes > [copy] Copying 1 file to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-protein-disorder/classes > [copy] Copying 14 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-protein-disorder/classes > > test: > [junit] Running org.biojava3.ronn.JronnTest > [junit] Testsuite: org.biojava3.ronn.JronnTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.032 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.032 sec > [junit] > [junit] Testcase: verifyRanges took 2.017 sec > [junit] Running org.biojava3.ronn.NonstandardProteinCompoundTest > [junit] Testsuite: org.biojava3.ronn.NonstandardProteinCompoundTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.02 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.02 sec > [junit] > [junit] Testcase: test took 6.002 sec > > BUILD SUCCESSFUL > Total time: 10 seconds > # Requires remote access and tmp directory write access > #cd biojava3-structure && ant test > cd biojava3-structure-gui && ant test > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure-gui/build.xml > > compile-test: > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-structure-gui/classes > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure-gui/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > [javac] Compiling 6 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-structure-gui/classes > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure-gui/src/test/resources does not exist. > [copy] Copying 115 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-structure-gui/classes > > test: > [junit] Running org.biojava.structure.gui.JmolViewerImplTest > [junit] Testsuite: org.biojava.structure.gui.JmolViewerImplTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec > [junit] > [junit] Testcase: testMe took 0.001 sec > [junit] Running org.biojava.structure.gui.RenderStyleTest > [junit] Testsuite: org.biojava.structure.gui.RenderStyleTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec > [junit] > [junit] Testcase: testSomeMethod took 0.001 sec > [junit] Running org.biojava.structure.gui.StructureViewerTest > [junit] Testsuite: org.biojava.structure.gui.StructureViewerTest > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec > [junit] > [junit] Testcase: testGetColor took 0.003 sec > [junit] Testcase: testSetStructure took 0 sec > [junit] Testcase: testClear took 0 sec > [junit] Testcase: testGetSelection took 0.003 sec > [junit] Testcase: testRepaint took 0 sec > [junit] Testcase: testSetSelection took 0 sec > [junit] Testcase: testSetZoom took 0 sec > [junit] Testcase: testSetColor took 0.001 sec > [junit] Testcase: testSetStyle took 0 sec > [junit] Running org.biojava.structure.gui.ViewerTest > [junit] Testsuite: org.biojava.structure.gui.ViewerTest > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec > [junit] > [junit] Testcase: testStructureLoad took 0.001 sec > > BUILD SUCCESSFUL > Total time: 3 seconds > #No test in biojava-ws available > #cd biojava3-ws && ant test > make[1]: Leaving directory '/?BUILDDIR?/biojava3-live-3.1.0+dfsg' > fakeroot debian/rules binary > dh binary --with javahelper > dh_testroot > dh_prep > dh_auto_install > dh_install > dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting > make: *** [binary] Error 2 The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/11/08/biojava3-live_3.1.0+dfsg-1_jessie.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. From lucas at lucas-nussbaum.net Sun Nov 9 07:22:57 2014 From: lucas at lucas-nussbaum.net (Lucas Nussbaum) Date: Sun, 9 Nov 2014 08:22:57 +0100 Subject: [Debian-med-packaging] Bug#768730: python-mne: FTBFS in jessie: Tests failures Message-ID: <20141109072257.GA18692@xanadu.blop.info> Source: python-mne Version: 0.8.4+dfsg-1 Severity: serious Tags: jessie sid User: debian-qa at lists.debian.org Usertags: qa-ftbfs-20141108 qa-ftbfs Justification: FTBFS in jessie on amd64 Hi, During a rebuild of all packages in jessie (in a jessie chroot, not a sid chroot), your package failed to build on amd64. Relevant part (hopefully): > mne.viz.epochs 222 66 97 51 63% 76, 80, 98, 103, 106, 157, 235-261, 270, 272, 274-277, 280-288, 293-315, 356, 367, 373 > mne.viz.evoked 120 36 75 28 67% 59-63, 91, 96-97, 104-105, 111-116, 134-137, 146, 166-167, 279-296 > mne.viz.ica 210 66 82 38 64% 22-39, 76, 131, 134-136, 146, 187-188, 190, 198-199, 250-251, 302, 312, 315, 324, 376-387, 392, 417-445, 469 > mne.viz.misc 239 118 124 68 49% 64, 102, 156-242, 268-338, 364-390, 461 > mne.viz.raw 354 31 148 36 87% 69, 101-103, 134, 140-141, 157, 171-172, 245-246, 261-262, 353-357, 377, 385, 387-394, 405-406, 541, 557, 594 > mne.viz.topo 273 100 141 63 61% 80, 84-85, 163-184, 193, 222, 224, 226, 295-298, 302, 311-312, 326-327, 337, 352, 375-397, 441-458, 520-544, 606-627, 640, 644, 647, 655, 657, 659, 709, 711, 713-714 > mne.viz.topomap 461 201 205 128 51% 33-34, 43-45, 49, 56, 59-61, 72-100, 146-204, 237, 242-245, 294, 299, 375-377, 379, 395, 398-399, 416, 425, 429-434, 474, 477-481, 484-491, 538, 633, 645, 655-660, 773, 793-794, 802-803, 810, 921-1035 > mne.viz.utils 164 52 69 35 63% 77, 79, 81, 83, 103, 108-116, 127, 161-200, 211-213, 220-224, 231-232, 253, 282-283, 294-295, 337, 344, 360-361 > ------------------------------------------------------------------------------- > TOTAL 26999 10372 10389 5291 58% > ---------------------------------------------------------------------- > Ran 376 tests in 495.111s > > FAILED (SKIP=109, errors=3) > make[1]: *** [override_dh_auto_test] Error 1 > debian/rules:18: recipe for target 'override_dh_auto_test' failed The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/11/08/python-mne_0.8.4+dfsg-1_jessie.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. From lucas at lucas-nussbaum.net Sun Nov 9 07:43:19 2014 From: lucas at lucas-nussbaum.net (Lucas Nussbaum) Date: Sun, 9 Nov 2014 08:43:19 +0100 Subject: [Debian-med-packaging] Bug#768760: libbio-graphics-perl: FTBFS in jessie: unsatisfiable build-dependency: libgd-gd2-perl (>= 2.3) (versioned dep on a virtual pkg?) Message-ID: <20141109074319.GA20887@xanadu.blop.info> Source: libbio-graphics-perl Version: 2.39-1 Severity: serious Tags: jessie sid User: debian-qa at lists.debian.org Usertags: qa-ftbfs-20141108 qa-ftbfs Justification: FTBFS in jessie on amd64 Hi, During a rebuild of all packages in jessie (in a jessie chroot, not a sid chroot), your package failed to build on amd64. Relevant part (hopefully): > ???????????????????????????????????????????????????????????????????????????????? > ? Install libbio-graphics-perl build dependencies (apt-based resolver) ? > ???????????????????????????????????????????????????????????????????????????????? > > Installing build dependencies > Reading package lists... > Building dependency tree... > Reading state information... > Some packages could not be installed. This may mean that you have > requested an impossible situation or if you are using the unstable > distribution that some required packages have not yet been created > or been moved out of Incoming. > The following information may help to resolve the situation: > > The following packages have unmet dependencies: > sbuild-build-depends-libbio-graphics-perl-dummy : Depends: libgd-gd2-perl (>= 2.3) > E: Unable to correct problems, you have held broken packages. > apt-get failed. The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/11/08/libbio-graphics-perl_2.39-1_jessie.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. From lucas at lucas-nussbaum.net Sun Nov 9 07:26:56 2014 From: lucas at lucas-nussbaum.net (Lucas Nussbaum) Date: Sun, 9 Nov 2014 08:26:56 +0100 Subject: [Debian-med-packaging] Bug#768769: plastimatch: FTBFS in jessie: Tests failures Message-ID: <20141109072656.GA19263@xanadu.blop.info> Source: plastimatch Version: 1.5.16+dfsg-1 Severity: serious Tags: jessie sid User: debian-qa at lists.debian.org Usertags: qa-ftbfs-20141108 qa-ftbfs Justification: FTBFS in jessie on amd64 Hi, During a rebuild of all packages in jessie (in a jessie chroot, not a sid chroot), your package failed to build on amd64. Relevant part (hopefully): > Start 286: plm-sift-a-check-1 > Start 287: plm-sift-a-check-2 > 351/352 Test #286: plm-sift-a-check-1 .................... Passed 0.02 sec > 352/352 Test #287: plm-sift-a-check-2 .................... Passed 0.02 sec > > 99% tests passed, 3 tests failed out of 352 > > Total Test time (real) = 41.57 sec > > The following tests FAILED: > 297 - plm-union (Failed) > 298 - plm-union-stats (Failed) > 299 - plm-union-check (Failed) > Errors while running CTest > make[2]: *** [test] Error 8 > Makefile:140: recipe for target 'test' failed The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/11/08/plastimatch_1.5.16+dfsg-1_jessie.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. From andreas at an3as.eu Sun Nov 9 08:28:38 2014 From: andreas at an3as.eu (Andreas Tille) Date: Sun, 9 Nov 2014 09:28:38 +0100 Subject: [Debian-med-packaging] Bug#768730: [lucas@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures] Message-ID: <20141109082838.GB18517@an3as.eu> Hi Alexandre, can you please have a look into this? Please not that the freeze rules do not allow fixing this in a new upstream version but we rather need to find a minimal patch. If you do not have a better idea skipping the affected tests to solve this issue. Kind regards Andreas. ----- Forwarded message from Lucas Nussbaum ----- Date: Sun, 9 Nov 2014 08:22:57 +0100 From: Lucas Nussbaum To: submit at bugs.debian.org Subject: Bug#768730: python-mne: FTBFS in jessie: Tests failures X-Debian-PR-Message: report 768730 X-Debian-PR-Package: src:python-mne X-Debian-PR-Keywords: jessie sid X-Debian-PR-Source: python-mne Source: python-mne Version: 0.8.4+dfsg-1 Severity: serious Tags: jessie sid User: debian-qa at lists.debian.org Usertags: qa-ftbfs-20141108 qa-ftbfs Justification: FTBFS in jessie on amd64 Hi, During a rebuild of all packages in jessie (in a jessie chroot, not a sid chroot), your package failed to build on amd64. Relevant part (hopefully): > mne.viz.epochs 222 66 97 51 63% 76, 80, 98, 103, 106, 157, 235-261, 270, 272, 274-277, 280-288, 293-315, 356, 367, 373 > mne.viz.evoked 120 36 75 28 67% 59-63, 91, 96-97, 104-105, 111-116, 134-137, 146, 166-167, 279-296 > mne.viz.ica 210 66 82 38 64% 22-39, 76, 131, 134-136, 146, 187-188, 190, 198-199, 250-251, 302, 312, 315, 324, 376-387, 392, 417-445, 469 > mne.viz.misc 239 118 124 68 49% 64, 102, 156-242, 268-338, 364-390, 461 > mne.viz.raw 354 31 148 36 87% 69, 101-103, 134, 140-141, 157, 171-172, 245-246, 261-262, 353-357, 377, 385, 387-394, 405-406, 541, 557, 594 > mne.viz.topo 273 100 141 63 61% 80, 84-85, 163-184, 193, 222, 224, 226, 295-298, 302, 311-312, 326-327, 337, 352, 375-397, 441-458, 520-544, 606-627, 640, 644, 647, 655, 657, 659, 709, 711, 713-714 > mne.viz.topomap 461 201 205 128 51% 33-34, 43-45, 49, 56, 59-61, 72-100, 146-204, 237, 242-245, 294, 299, 375-377, 379, 395, 398-399, 416, 425, 429-434, 474, 477-481, 484-491, 538, 633, 645, 655-660, 773, 793-794, 802-803, 810, 921-1035 > mne.viz.utils 164 52 69 35 63% 77, 79, 81, 83, 103, 108-116, 127, 161-200, 211-213, 220-224, 231-232, 253, 282-283, 294-295, 337, 344, 360-361 > ------------------------------------------------------------------------------- > TOTAL 26999 10372 10389 5291 58% > ---------------------------------------------------------------------- > Ran 376 tests in 495.111s > > FAILED (SKIP=109, errors=3) > make[1]: *** [override_dh_auto_test] Error 1 > debian/rules:18: recipe for target 'override_dh_auto_test' failed The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/11/08/python-mne_0.8.4+dfsg-1_jessie.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. _______________________________________________ Debian-med-packaging mailing list Debian-med-packaging at lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging ----- End forwarded message ----- -- http://fam-tille.de From ftpmaster at ftp-master.debian.org Sun Nov 9 09:09:17 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Sun, 09 Nov 2014 09:09:17 +0000 Subject: [Debian-med-packaging] Processing of libbio-graphics-perl_2.39-2_amd64.changes Message-ID: libbio-graphics-perl_2.39-2_amd64.changes uploaded successfully to localhost along with the files: libbio-graphics-perl_2.39-2.dsc libbio-graphics-perl_2.39-2.debian.tar.xz libbio-graphics-perl_2.39-2_all.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Sun Nov 9 09:19:28 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Sun, 09 Nov 2014 09:19:28 +0000 Subject: [Debian-med-packaging] libbio-graphics-perl_2.39-2_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 09 Nov 2014 09:48:22 +0100 Source: libbio-graphics-perl Binary: libbio-graphics-perl Architecture: source all Version: 2.39-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Closes: 768760 Changes: libbio-graphics-perl (2.39-2) unstable; urgency=medium . * Build depends libgd-perl rather than the removed libgd-gd2-perl package Closes: #768760 Checksums-Sha1: 6cc59e4b74def053c1a654e5aa678de0046a0d4e 2193 libbio-graphics-perl_2.39-2.dsc a5b30cea80bf6b93f948111b6f7ad4d93c49f538 7824 libbio-graphics-perl_2.39-2.debian.tar.xz 4c99e89efca6ffc33e010475c60b188de2173785 605646 libbio-graphics-perl_2.39-2_all.deb Checksums-Sha256: cc208b90ebb21c963f7d93026868087986f646fba8f604922adb548d53f578ed 2193 libbio-graphics-perl_2.39-2.dsc a5e06693939f29f568a0f1373e70cc464bd780a14824bdc019b98137b12e4a3f 7824 libbio-graphics-perl_2.39-2.debian.tar.xz a9c9ba044f53a1fd2b931a4ad4f93a5861651e1d1948b30c965d8604ec5c5e6a 605646 libbio-graphics-perl_2.39-2_all.deb Files: d505e75d66049145976ed091aeb6ade4 2193 perl optional libbio-graphics-perl_2.39-2.dsc 8577c1d2f29b45c0b4b1b83879fb60da 7824 perl optional libbio-graphics-perl_2.39-2.debian.tar.xz 30481823ff79a27084bb9b7518a6a7bc 605646 perl optional libbio-graphics-perl_2.39-2_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJUXy5TAAoJEFeKBJTRxkbRMxwP+gP58pLPKeh8SsuhllSQmEfj +D5evHPr/r4dv7xsNwqQz9qUF5z4sp09a+1f5AgwLExl6XyEPOePCqkMLyQ5aOaB Mk7en465xDL5tXRYDHZkU2I/mQ3K/IflCTdYnT8h17fKwqU37zj97vYus1YE1GHl PGXNTlmnLrjO2P1Cctv5zFvSE5Iv6BMoWQ9yl3xlG7JpEmRy0RC/8WzFUEd3ji0+ Uql5oonkG3L6U8vbIHXxdR0X9oJLbVqPb++5+0p9rIxDYxYmzuKJAhsAntfFVAPT tIP+m54lrztUBrn4yHUMHx4eAwFknhZW4D2eG7nji4IIofcy62TxBvK/4rLxLDr3 18sM7/krlyItIeZdGSLSblXYgxQ+1bpHA6MqcoGnSk/4IXwnvSI4UGGFLHjvtvjH r0pyexSNqY9UhsW1Jlc5WLB5LgTLmSxF1iMBXTqUhj/jzjHGDGOcGWpx0hJ/JJu+ bAkvixHdWVowOSFVeEiQT+cXNvTrk7bOb6S9uIyP+dB0d8j1GnJrvZz9wdteZXXV ggfQYhP6z55e2pXhqBCcSJfcpjPQvyc+Loiwfbx2RbjnijM+BzGuOquKiWULrgMn I5wMtycZHSL1Jvcy8UJOE7Umve6eSqbUAu+kl7ijI6h8KsdIr5vHJM4hdVDgtioU UBenfaC7It3GsQvWHzfn =BM46 -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From owner at bugs.debian.org Sun Nov 9 09:21:09 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Sun, 09 Nov 2014 09:21:09 +0000 Subject: [Debian-med-packaging] Bug#768760: marked as done (libbio-graphics-perl: FTBFS in jessie: unsatisfiable build-dependency: libgd-gd2-perl (>= 2.3) (versioned dep on a virtual pkg?)) References: <20141109074319.GA20887@xanadu.blop.info> Message-ID: Your message dated Sun, 09 Nov 2014 09:19:28 +0000 with message-id and subject line Bug#768760: fixed in libbio-graphics-perl 2.39-2 has caused the Debian Bug report #768760, regarding libbio-graphics-perl: FTBFS in jessie: unsatisfiable build-dependency: libgd-gd2-perl (>= 2.3) (versioned dep on a virtual pkg?) to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 768760: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=768760 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Lucas Nussbaum Subject: libbio-graphics-perl: FTBFS in jessie: unsatisfiable build-dependency: libgd-gd2-perl (>= 2.3) (versioned dep on a virtual pkg?) Date: Sun, 9 Nov 2014 08:43:19 +0100 Size: 3761 URL: -------------- next part -------------- An embedded message was scrubbed... From: Andreas Tille Subject: Bug#768760: fixed in libbio-graphics-perl 2.39-2 Date: Sun, 09 Nov 2014 09:19:28 +0000 Size: 5252 URL: From tille at debian.org Sun Nov 9 09:33:22 2014 From: tille at debian.org (Andreas Tille) Date: Sun, 09 Nov 2014 10:33:22 +0100 Subject: [Debian-med-packaging] Bug#768784: unblock: libbio-graphics-perl/2.39-2 Message-ID: <20141109093322.29898.8374.reportbug@mail.an3as.eu> Package: release.debian.org Severity: normal User: release.debian.org at packages.debian.org Usertags: unblock Please unblock package libbio-graphics-perl Build depends libgd-perl rather than the removed libgd-gd2-perl package Closes: #768760 Debdiff attached (it also contains a removal from Uploaders which was pending in Git and which seems to be apropriate to upload for reasons explained in Debian private.) unblock libbio-graphics-perl/2.39-2 -- System Information: Debian Release: 7.7 APT prefers stable APT policy: (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.2.0-4-amd64 (SMP w/1 CPU core) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -------------- next part -------------- A non-text attachment was scrubbed... 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URL: From carandraug+dev at gmail.com Sun Nov 9 20:50:31 2014 From: carandraug+dev at gmail.com (carandraug) Date: Sun, 09 Nov 2014 20:50:31 +0000 Subject: [Debian-med-packaging] Bug#768877: libgdcm2-dev: CMake reports that GDCM is not installed Message-ID: <20141109205031.6537.83056.reportbug@word> Package: libgdcm2-dev Version: 2.4.4-3 Severity: important Dear Maintainer, the GDCM project has a ProjectConfig.cmake file to be used by other projects. This was working fine on Wheezy (with gdcm 2.2 but seems to be broken in Jessie): In Wheezy: $ cmake --find-package -DNAME=GDCM -DLANGUAGE=CXX -DCOMPILER_ID=GNU -DMODE=COMPILE -I/usr/include/gdcm-2.2 While in Jessie: $ cmake --find-package -DNAME=GDCM -DLANGUAGE=CXX -DCOMPILER_ID=GNU -DMODE=COMPILE GDCM not found. CMake Error: Problem processing arguments. Aborting. This breaks build of other project that uses GDCM since it is required to get the include flags (cmake's m4 macro for autoconf is pretty much a wrapper to such system call). Carn? -- System Information: Debian Release: jessie/sid APT prefers testing-updates APT policy: (500, 'testing-updates'), (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 3.16-3-amd64 (SMP w/4 CPU cores) Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages libgdcm2-dev depends on: ii libgdcm2.4 2.4.4-3 libgdcm2-dev recommends no packages. libgdcm2-dev suggests no packages. -- no debconf information From velazquezgonzalo at express.com.ar Sun Nov 9 21:23:05 2014 From: velazquezgonzalo at express.com.ar (velazquezgonzalo) Date: Mon, 10 Nov 2014 02:53:05 +0530 Subject: [Debian-med-packaging] uwaga Message-ID: <4e47e7b674d81e49dbb960ef050e060f@express.com.ar> zosta?e? nagrodzony dziewi??set tysi?cy dolar?w przez Microsoft, wy?lij imi?, adres, numer -------------- next part -------------- An HTML attachment was scrubbed... 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URL: From alexandre.gramfort at m4x.org Mon Nov 10 10:07:23 2014 From: alexandre.gramfort at m4x.org (Alexandre Gramfort) Date: Mon, 10 Nov 2014 11:07:23 +0100 Subject: [Debian-med-packaging] Bug#768730: [lucas@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures] In-Reply-To: <20141109082838.GB18517@an3as.eu> References: <20141109082838.GB18517@an3as.eu> Message-ID: hi Andreas, > can you please have a look into this? Please not that the freeze rules > do not allow fixing this in a new upstream version but we rather need to > find a minimal patch. If you do not have a better idea skipping the > affected tests to solve this issue. we should skip the tests. How do I push a patch without making a new release? test_legendre_val test_legendre_table test_make_field_map_meg need to be skipped. Alex > Kind regards > > Andreas. > > ----- Forwarded message from Lucas Nussbaum ----- > > Date: Sun, 9 Nov 2014 08:22:57 +0100 > From: Lucas Nussbaum > To: submit at bugs.debian.org > Subject: Bug#768730: python-mne: FTBFS in jessie: Tests failures > X-Debian-PR-Message: report 768730 > X-Debian-PR-Package: src:python-mne > X-Debian-PR-Keywords: jessie sid > X-Debian-PR-Source: python-mne > > Source: python-mne > Version: 0.8.4+dfsg-1 > Severity: serious > Tags: jessie sid > User: debian-qa at lists.debian.org > Usertags: qa-ftbfs-20141108 qa-ftbfs > Justification: FTBFS in jessie on amd64 > > Hi, > > During a rebuild of all packages in jessie (in a jessie chroot, not a > sid chroot), your package failed to build on amd64. > > Relevant part (hopefully): >> mne.viz.epochs 222 66 97 51 63% 76, 80, 98, 103, 106, 157, 235-261, 270, 272, 274-277, 280-288, 293-315, 356, 367, 373 >> mne.viz.evoked 120 36 75 28 67% 59-63, 91, 96-97, 104-105, 111-116, 134-137, 146, 166-167, 279-296 >> mne.viz.ica 210 66 82 38 64% 22-39, 76, 131, 134-136, 146, 187-188, 190, 198-199, 250-251, 302, 312, 315, 324, 376-387, 392, 417-445, 469 >> mne.viz.misc 239 118 124 68 49% 64, 102, 156-242, 268-338, 364-390, 461 >> mne.viz.raw 354 31 148 36 87% 69, 101-103, 134, 140-141, 157, 171-172, 245-246, 261-262, 353-357, 377, 385, 387-394, 405-406, 541, 557, 594 >> mne.viz.topo 273 100 141 63 61% 80, 84-85, 163-184, 193, 222, 224, 226, 295-298, 302, 311-312, 326-327, 337, 352, 375-397, 441-458, 520-544, 606-627, 640, 644, 647, 655, 657, 659, 709, 711, 713-714 >> mne.viz.topomap 461 201 205 128 51% 33-34, 43-45, 49, 56, 59-61, 72-100, 146-204, 237, 242-245, 294, 299, 375-377, 379, 395, 398-399, 416, 425, 429-434, 474, 477-481, 484-491, 538, 633, 645, 655-660, 773, 793-794, 802-803, 810, 921-1035 >> mne.viz.utils 164 52 69 35 63% 77, 79, 81, 83, 103, 108-116, 127, 161-200, 211-213, 220-224, 231-232, 253, 282-283, 294-295, 337, 344, 360-361 >> ------------------------------------------------------------------------------- >> TOTAL 26999 10372 10389 5291 58% >> ---------------------------------------------------------------------- >> Ran 376 tests in 495.111s >> >> FAILED (SKIP=109, errors=3) >> make[1]: *** [override_dh_auto_test] Error 1 >> debian/rules:18: recipe for target 'override_dh_auto_test' failed > > The full build log is available from: > http://aws-logs.debian.net/ftbfs-logs/2014/11/08/python-mne_0.8.4+dfsg-1_jessie.log > > A list of current common problems and possible solutions is available at > http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! > > About the archive rebuild: The rebuild was done on EC2 VM instances from > Amazon Web Services, using a clean, minimal and up-to-date chroot. Every > failed build was retried once to eliminate random failures. > > _______________________________________________ > Debian-med-packaging mailing list > Debian-med-packaging at lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > > > ----- End forwarded message ----- > > -- > http://fam-tille.de From andreas at an3as.eu Mon Nov 10 13:30:59 2014 From: andreas at an3as.eu (Andreas Tille) Date: Mon, 10 Nov 2014 14:30:59 +0100 Subject: [Debian-med-packaging] [lucas@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures] In-Reply-To: References: <20141109082838.GB18517@an3as.eu> Message-ID: <20141110133059.GD22591@an3as.eu> On Mon, Nov 10, 2014 at 11:07:23AM +0100, Alexandre Gramfort wrote: > hi Andreas, > > > can you please have a look into this? Please not that the freeze rules > > do not allow fixing this in a new upstream version but we rather need to > > find a minimal patch. If you do not have a better idea skipping the > > affected tests to solve this issue. > > we should skip the tests. How do I push a patch without making a new > release? quilt new skip_failing_tests.patch quilt edit quilt refresh $EDITOR debian/patches/skip_failing_tests.patch # add DEP3 header according to # http://dep.debian.net/deps/dep3/ git add debian/patches git commit -a > test_legendre_val > test_legendre_table > test_make_field_map_meg > > need to be skipped. If these tests are single files you can edit these three files and delete their content. Hope this helps Andreas. -- http://fam-tille.de From andreas at an3as.eu Mon Nov 10 13:30:59 2014 From: andreas at an3as.eu (Andreas Tille) Date: Mon, 10 Nov 2014 14:30:59 +0100 Subject: [Debian-med-packaging] Bug#768730: [lucas@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures] In-Reply-To: References: <20141109082838.GB18517@an3as.eu> Message-ID: <20141110133059.GD22591@an3as.eu> On Mon, Nov 10, 2014 at 11:07:23AM +0100, Alexandre Gramfort wrote: > hi Andreas, > > > can you please have a look into this? Please not that the freeze rules > > do not allow fixing this in a new upstream version but we rather need to > > find a minimal patch. If you do not have a better idea skipping the > > affected tests to solve this issue. > > we should skip the tests. How do I push a patch without making a new > release? quilt new skip_failing_tests.patch quilt edit quilt refresh $EDITOR debian/patches/skip_failing_tests.patch # add DEP3 header according to # http://dep.debian.net/deps/dep3/ git add debian/patches git commit -a > test_legendre_val > test_legendre_table > test_make_field_map_meg > > need to be skipped. If these tests are single files you can edit these three files and delete their content. Hope this helps Andreas. -- http://fam-tille.de From admin at emcentral.info Mon Nov 10 13:16:38 2014 From: admin at emcentral.info (Your Avon Boutique) Date: Mon, 10 Nov 2014 07:16:38 -0600 Subject: [Debian-med-packaging] =?windows-1252?q?=22AVON=22_-_The_New_Men_?= =?windows-1252?q?and_Women=27s_Make-Up_Collection=2C_Avon_takes_Ma?= =?windows-1252?q?keup_to_a_whole_new_lever?= Message-ID: <35b5fe0c22de10a027ad70d100122478@emcentral.info> An HTML attachment was scrubbed... URL: From pascal.devuyst at gmail.com Mon Nov 10 13:39:41 2014 From: pascal.devuyst at gmail.com (Pascal De Vuyst) Date: Mon, 10 Nov 2014 14:39:41 +0100 Subject: [Debian-med-packaging] Bug#768969: mgltools-webservices: Typo in package description: "It" Message-ID: <20141110133941.23130.43577.reportbug@trusty> Package: mgltools-webservices Version: 1.5.7~rc1+cvs.20140424-1 Severity: minor User: ubuntu-devel at lists.ubuntu.com Usertags: origin-ubuntu vivid Dear Maintainer, This paragraph in the package description contains a small typo: The web services provide the means for inter-process communication of different parts of the autodocktools. It is used especially for the control of workflows addressing in silico screening. Begins with a plural and continues with a singular, should probably be: The web services provide the means for inter-process communication of different parts of the autodocktools. This package is used especially for the control of workflows addressing in silico screening. Thanks, Pascal From alexandre.gramfort at m4x.org Mon Nov 10 16:48:32 2014 From: alexandre.gramfort at m4x.org (Alexandre Gramfort) Date: Mon, 10 Nov 2014 17:48:32 +0100 Subject: [Debian-med-packaging] Bug#768730: Bug#768730: [lucas@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures] In-Reply-To: <20141110133059.GD22591@an3as.eu> References: <20141109082838.GB18517@an3as.eu> <20141110133059.GD22591@an3as.eu> Message-ID: hi, ok but the current master branch on debian.org is at version 0.8.6. I doubt I should make changes their for version 0.8.4 no? these 3 tests > test_legendre_val > test_legendre_table > test_make_field_map_meg should be deleted by the patch. Alex On Mon, Nov 10, 2014 at 2:30 PM, Andreas Tille wrote: > On Mon, Nov 10, 2014 at 11:07:23AM +0100, Alexandre Gramfort wrote: >> hi Andreas, >> >> > can you please have a look into this? Please not that the freeze rules >> > do not allow fixing this in a new upstream version but we rather need to >> > find a minimal patch. If you do not have a better idea skipping the >> > affected tests to solve this issue. >> >> we should skip the tests. How do I push a patch without making a new >> release? > > quilt new skip_failing_tests.patch > quilt edit > quilt refresh > $EDITOR debian/patches/skip_failing_tests.patch > # add DEP3 header according to > # http://dep.debian.net/deps/dep3/ > git add debian/patches > git commit -a > >> test_legendre_val >> test_legendre_table >> test_make_field_map_meg >> >> need to be skipped. > > If these tests are single files you can edit these three files and > delete their content. > > Hope this helps > > Andreas. > > -- > http://fam-tille.de > > _______________________________________________ > Debian-med-packaging mailing list > Debian-med-packaging at lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging From debian at onerussian.com Mon Nov 10 17:51:39 2014 From: debian at onerussian.com (Yaroslav Halchenko) Date: Mon, 10 Nov 2014 12:51:39 -0500 Subject: [Debian-med-packaging] Bug#768730: Bug#768730: [lucas@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures] In-Reply-To: References: <20141109082838.GB18517@an3as.eu> <20141110133059.GD22591@an3as.eu> Message-ID: <20141110175139.GC32588@onerussian.com> amount of changes from 0.8.4 to 0.8.6 seems to be miniscule and just a bug fix so we could demand unblock for this one $> git diff v0.8.4..v0.8.6 --stat MANIFEST.in | 5 +++++ doc/source/whats_new.rst | 2 +- mne/__init__.py | 2 +- mne/coreg.py | 3 ++- so I think it would be safe to push this patch on top of the 0.8.6 ... but why is it failing now that it wasn't failing before? may be they better be actually fixed? (sorry -- busy atm, can't look in detail) On Mon, 10 Nov 2014, Alexandre Gramfort wrote: > hi, > ok but the current master branch on debian.org is at version 0.8.6. > I doubt I should make changes their for version 0.8.4 no? > these 3 tests > > test_legendre_val > > test_legendre_table > > test_make_field_map_meg > should be deleted by the patch. > Alex > On Mon, Nov 10, 2014 at 2:30 PM, Andreas Tille wrote: > > On Mon, Nov 10, 2014 at 11:07:23AM +0100, Alexandre Gramfort wrote: > >> hi Andreas, > >> > can you please have a look into this? Please not that the freeze rules > >> > do not allow fixing this in a new upstream version but we rather need to > >> > find a minimal patch. If you do not have a better idea skipping the > >> > affected tests to solve this issue. > >> we should skip the tests. How do I push a patch without making a new > >> release? > > quilt new skip_failing_tests.patch > > quilt edit > > quilt refresh > > $EDITOR debian/patches/skip_failing_tests.patch > > # add DEP3 header according to > > # http://dep.debian.net/deps/dep3/ > > git add debian/patches > > git commit -a > >> test_legendre_val > >> test_legendre_table > >> test_make_field_map_meg > >> need to be skipped. > > If these tests are single files you can edit these three files and > > delete their content. > > Hope this helps > > Andreas. > > -- > > http://fam-tille.de > > _______________________________________________ > > Debian-med-packaging mailing list > > Debian-med-packaging at lists.alioth.debian.org > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Research Scientist, Psychological and Brain Sciences Dept. Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW: http://www.linkedin.com/in/yarik From gregsharp.geo at yahoo.com Mon Nov 10 20:01:48 2014 From: gregsharp.geo at yahoo.com (Gregory Sharp) Date: Mon, 10 Nov 2014 12:01:48 -0800 Subject: [Debian-med-packaging] Bug#768769: plastimatch: FTBFS in jessie: Tests failures In-Reply-To: <20141109072656.GA19263@xanadu.blop.info> References: <20141109072656.GA19263@xanadu.blop.info> Message-ID: <1415649708.67741.YahooMailNeo@web162104.mail.bf1.yahoo.com> Thank you for the report. This is a bug in upstream, where the regression test is missing a dependency. -- Greg Sharp gregsharp at geocities.com ----- Original Message ----- > From: Lucas Nussbaum > To: submit at bugs.debian.org > Cc: > Sent: Sunday, November 9, 2014 2:26 AM > Subject: Bug#768769: plastimatch: FTBFS in jessie: Tests failures > > Source: plastimatch > Version: 1.5.16+dfsg-1 > Severity: serious > Tags: jessie sid > User: debian-qa at lists.debian.org > Usertags: qa-ftbfs-20141108 qa-ftbfs > Justification: FTBFS in jessie on amd64 > > Hi, > > During a rebuild of all packages in jessie (in a jessie chroot, not a > sid chroot), your package failed to build on amd64. > > Relevant part (hopefully): >> Start 286: plm-sift-a-check-1 >> Start 287: plm-sift-a-check-2 >> 351/352 Test #286: plm-sift-a-check-1 .................... Passed 0.02 > sec >> 352/352 Test #287: plm-sift-a-check-2 .................... Passed 0.02 > sec >> >> 99% tests passed, 3 tests failed out of 352 >> >> Total Test time (real) = 41.57 sec >> >> The following tests FAILED: >> 297 - plm-union (Failed) >> 298 - plm-union-stats (Failed) >> 299 - plm-union-check (Failed) >> Errors while running CTest >> make[2]: *** [test] Error 8 >> Makefile:140: recipe for target 'test' failed > > The full build log is available from: > > http://aws-logs.debian.net/ftbfs-logs/2014/11/08/plastimatch_1.5.16+dfsg-1_jessie.log > > A list of current common problems and possible solutions is available at > http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! > > About the archive rebuild: The rebuild was done on EC2 VM instances from > Amazon Web Services, using a clean, minimal and up-to-date chroot. Every > failed build was retried once to eliminate random failures. > From gregsharp.geo at yahoo.com Mon Nov 10 20:01:48 2014 From: gregsharp.geo at yahoo.com (Gregory Sharp) Date: Mon, 10 Nov 2014 12:01:48 -0800 Subject: [Debian-med-packaging] Bug#768769: plastimatch: FTBFS in jessie: Tests failures In-Reply-To: <20141109072656.GA19263@xanadu.blop.info> References: <20141109072656.GA19263@xanadu.blop.info> Message-ID: <1415649708.67741.YahooMailNeo@web162104.mail.bf1.yahoo.com> Thank you for the report. This is a bug in upstream, where the regression test is missing a dependency. -- Greg Sharp gregsharp at geocities.com ----- Original Message ----- > From: Lucas Nussbaum > To: submit at bugs.debian.org > Cc: > Sent: Sunday, November 9, 2014 2:26 AM > Subject: Bug#768769: plastimatch: FTBFS in jessie: Tests failures > > Source: plastimatch > Version: 1.5.16+dfsg-1 > Severity: serious > Tags: jessie sid > User: debian-qa at lists.debian.org > Usertags: qa-ftbfs-20141108 qa-ftbfs > Justification: FTBFS in jessie on amd64 > > Hi, > > During a rebuild of all packages in jessie (in a jessie chroot, not a > sid chroot), your package failed to build on amd64. > > Relevant part (hopefully): >> Start 286: plm-sift-a-check-1 >> Start 287: plm-sift-a-check-2 >> 351/352 Test #286: plm-sift-a-check-1 .................... Passed 0.02 > sec >> 352/352 Test #287: plm-sift-a-check-2 .................... Passed 0.02 > sec >> >> 99% tests passed, 3 tests failed out of 352 >> >> Total Test time (real) = 41.57 sec >> >> The following tests FAILED: >> 297 - plm-union (Failed) >> 298 - plm-union-stats (Failed) >> 299 - plm-union-check (Failed) >> Errors while running CTest >> make[2]: *** [test] Error 8 >> Makefile:140: recipe for target 'test' failed > > The full build log is available from: > > http://aws-logs.debian.net/ftbfs-logs/2014/11/08/plastimatch_1.5.16+dfsg-1_jessie.log > > A list of current common problems and possible solutions is available at > http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! > > About the archive rebuild: The rebuild was done on EC2 VM instances from > Amazon Web Services, using a clean, minimal and up-to-date chroot. Every > failed build was retried once to eliminate random failures. > From andreas at an3as.eu Mon Nov 10 22:30:59 2014 From: andreas at an3as.eu (Andreas Tille) Date: Mon, 10 Nov 2014 23:30:59 +0100 Subject: [Debian-med-packaging] Bug#768730: Bug#768730: [lucas@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures] In-Reply-To: <20141110175139.GC32588@onerussian.com> References: <20141109082838.GB18517@an3as.eu> <20141110133059.GD22591@an3as.eu> <20141110175139.GC32588@onerussian.com> Message-ID: <20141110223059.GB13140@an3as.eu> On Mon, Nov 10, 2014 at 12:51:39PM -0500, Yaroslav Halchenko wrote: > amount of changes from 0.8.4 to 0.8.6 seems to be miniscule and just a > bug fix so we could demand unblock for this one I'll take the bet that this will fail. I personally would not try to stress test the patience of the release team. ;-) Kind regards Andreas. -- http://fam-tille.de From andreas at an3as.eu Mon Nov 10 22:29:39 2014 From: andreas at an3as.eu (Andreas Tille) Date: Mon, 10 Nov 2014 23:29:39 +0100 Subject: [Debian-med-packaging] Bug#768730: Bug#768730: [lucas@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures] In-Reply-To: References: <20141109082838.GB18517@an3as.eu> <20141110133059.GD22591@an3as.eu> Message-ID: <20141110222939.GA13140@an3as.eu> On Mon, Nov 10, 2014 at 05:48:32PM +0100, Alexandre Gramfort wrote: > hi, > > ok but the current master branch on debian.org is at version 0.8.6. > > I doubt I should make changes their for version 0.8.4 no? Just create a branch named jessie starting from 0.8.4. Unfortunately your sponsor has ignored the rules for freeze where you should upload to experimental and not to unstable. Please sort this out with your sponsor - he should know what to do. I'll be on vacation soon and have no time at all to fiddle around with this. > these 3 tests > > > test_legendre_val > > test_legendre_table > > test_make_field_map_meg > > should be deleted by the patch. So just do it. Kind regards Andreas. -- http://fam-tille.de From debian at onerussian.com Mon Nov 10 23:05:36 2014 From: debian at onerussian.com (Yaroslav Halchenko) Date: Mon, 10 Nov 2014 18:05:36 -0500 Subject: [Debian-med-packaging] Bug#768730: Bug#768730: [lucas@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures] In-Reply-To: <20141110223059.GB13140@an3as.eu> References: <20141109082838.GB18517@an3as.eu> <20141110133059.GD22591@an3as.eu> <20141110175139.GC32588@onerussian.com> <20141110223059.GB13140@an3as.eu> Message-ID: <20141110230536.GU32588@onerussian.com> On Mon, 10 Nov 2014, Andreas Tille wrote: > On Mon, Nov 10, 2014 at 12:51:39PM -0500, Yaroslav Halchenko wrote: > > amount of changes from 0.8.4 to 0.8.6 seems to be miniscule and just a > > bug fix so we could demand unblock for this one > I'll take the bet that this will fail. I personally would not try to > stress test the patience of the release team. ;-) well -- the changes are indeed miniscule (if I got it right) and just a bugfix anyways I guess -- I bet RT can swallow this one $> git diff v0.8.4..v0.8.6 diff --git a/MANIFEST.in b/MANIFEST.in index e2b071e..6e868f4 100644 --- a/MANIFEST.in +++ b/MANIFEST.in @@ -9,7 +9,12 @@ recursive-include mne/data *.sel recursive-include mne/data *.fif.gz recursive-include mne/layouts *.lout recursive-include mne/layouts *.lay +recursive-include mne/html *.js +recursive-include mne/html *.css recursive-exclude examples/MNE-sample-data * +recursive-exclude examples/MNE-testing-data * +recursive-exclude examples/MNE-spm-face * +recursive-exclude examples/MNE-somato-data * # recursive-include mne/fiff/tests/data * recursive-exclude mne/fiff/tests/data * recursive-exclude mne/fiff/bti/tests/data * diff --git a/doc/source/whats_new.rst b/doc/source/whats_new.rst index 0f31d17..23919c5 100644 --- a/doc/source/whats_new.rst +++ b/doc/source/whats_new.rst @@ -143,7 +143,7 @@ API - Deprecate Epochs.drop_picks in favor of a new method called drop_channels - - Deprecate `labels_from_parc` and `parc_from_labels` in favor of `read_annot` and `write_annot` + - Deprecate `labels_from_parc` and `parc_from_labels` in favor of `read_labels_from_annot` and `write_labels_to_annot` - The default of the new add_dist option of `setup_source_space` to add patch information will change from False to True in MNE-Python 0.9 diff --git a/mne/__init__.py b/mne/__init__.py index 0b90048..2ae0043 100644 --- a/mne/__init__.py +++ b/mne/__init__.py @@ -1,7 +1,7 @@ """MNE for MEG and EEG data analysis """ -__version__ = '0.8.4' +__version__ = '0.8.6' # have to import verbose first since it's needed by many things from .utils import (set_log_level, set_log_file, verbose, set_config, diff --git a/mne/coreg.py b/mne/coreg.py index ce634e1..2461380 100644 --- a/mne/coreg.py +++ b/mne/coreg.py @@ -1150,6 +1150,7 @@ def scale_source_space(subject_to, src_name, subject_from=None, scale=None, if add_dist: logger.info("Recomputing distances, this might take a while") - add_source_space_distances(sss, sss[0]['dist_limit'], n_jobs) + dist_limit = np.asscalar(sss[0]['dist_limit']) + add_source_space_distances(sss, dist_limit, n_jobs) write_source_spaces(dst, sss) -- Yaroslav O. Halchenko, Ph.D. http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org Research Scientist, Psychological and Brain Sciences Dept. Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419 WWW: http://www.linkedin.com/in/yarik From don at debian.org Tue Nov 11 00:15:07 2014 From: don at debian.org (Don Armstrong) Date: Mon, 10 Nov 2014 16:15:07 -0800 Subject: [Debian-med-packaging] Bug#769050: sra-toolkit should only install binaries, not symlinks to symlinks to binaries Message-ID: <20141111001507.GK4015@rzlab.ucr.edu> Package: src:sra-sdk Version: 2.3.5-2+dfsg-1 Severity: minor Since sra-toolkit isn't co-installable with another version, it should just install the binaries, and not symlinks which are two levels deep. -- Don Armstrong http://www.donarmstrong.com When bad men combine, the good must associate; else they will fall one by one, an unpitied sacrifice in a contemptible struggle. -- Edmund Burke "Thoughts on the Cause of Present Discontents" From plessy at debian.org Tue Nov 11 00:43:19 2014 From: plessy at debian.org (Charles Plessy) Date: Tue, 11 Nov 2014 09:43:19 +0900 Subject: [Debian-med-packaging] Bug#769050: Bug#769050: sra-toolkit should only install binaries, not symlinks to symlinks to binaries In-Reply-To: <20141111001507.GK4015@rzlab.ucr.edu> References: <20141111001507.GK4015@rzlab.ucr.edu> Message-ID: <20141111004319.GD5374@falafel.plessy.net> Le Mon, Nov 10, 2014 at 04:15:07PM -0800, Don Armstrong a ?crit : > Package: src:sra-sdk > Version: 2.3.5-2+dfsg-1 > Severity: minor > > Since sra-toolkit isn't co-installable with another version, it should > just install the binaries, and not symlinks which are two levels deep. Hi Don, I (or any other packager quicker than me) will investigate this for the next update of the package. Update to version 2.4.x has been delayed because the source tarball is not distributed on the NCBI's website. It is now on GitHub but there has been a gap. If you have time, and if it is till relevant to version 2.4.2-3, maybe you can also make your suggestion in Upstream's tracker ? https://github.com/ncbi/sra-tools Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan From andreas at fam-tille.de Tue Nov 11 06:16:55 2014 From: andreas at fam-tille.de (Andreas Tille) Date: Tue, 11 Nov 2014 07:16:55 +0100 Subject: [Debian-med-packaging] Bug#768730: Bug#768730: [lucas@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures] In-Reply-To: <20141110230536.GU32588@onerussian.com> References: <20141109082838.GB18517@an3as.eu> <20141110133059.GD22591@an3as.eu> <20141110175139.GC32588@onerussian.com> <20141110223059.GB13140@an3as.eu> <20141110230536.GU32588@onerussian.com> Message-ID: <20141111061655.GD13140@an3as.eu> On Mon, Nov 10, 2014 at 06:05:36PM -0500, Yaroslav Halchenko wrote: > > On Mon, 10 Nov 2014, Andreas Tille wrote: > > > On Mon, Nov 10, 2014 at 12:51:39PM -0500, Yaroslav Halchenko wrote: > > > amount of changes from 0.8.4 to 0.8.6 seems to be miniscule and just a > > > bug fix so we could demand unblock for this one > > > I'll take the bet that this will fail. I personally would not try to > > stress test the patience of the release team. ;-) > > well -- the changes are indeed miniscule (if I got it right) and just a > bugfix anyways I guess -- I bet RT can swallow this one To my experience over several releases it does not matter at all how small the upstream bugfixes might be. Freeze means only RC bugs will be fixed. Your only chance to get this through is if you file an RC bug which is fixed by the diff between 0.8.4 to 0.8.6 - but I doubt that this is rectified. The release team is following the rules very strictly so I think you will loose your bet. BTW, I would concentrate on the question why the tests that passed before are failing now. Kind regards Andreas. -- http://fam-tille.de From andreas at fam-tille.de Tue Nov 11 06:20:02 2014 From: andreas at fam-tille.de (Andreas Tille) Date: Tue, 11 Nov 2014 07:20:02 +0100 Subject: [Debian-med-packaging] Bug#768769: plastimatch: FTBFS in jessie: Tests failures In-Reply-To: <1415649708.67741.YahooMailNeo@web162104.mail.bf1.yahoo.com> References: <20141109072656.GA19263@xanadu.blop.info> <1415649708.67741.YahooMailNeo@web162104.mail.bf1.yahoo.com> Message-ID: <20141111062002.GE13140@an3as.eu> Hi Gregory, On Mon, Nov 10, 2014 at 12:01:48PM -0800, Gregory Sharp wrote: > This is a bug in upstream, where the regression test > is missing a dependency. I'm not sure what this really means but if it is a missing dependency do you want to express that we can fix this by just another Build-Depends and if yes which one? Are you able to commit a patch to SVN? Kind regards Andreas. -- http://fam-tille.de From ftpmaster at ftp-master.debian.org Tue Nov 11 06:24:56 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 11 Nov 2014 06:24:56 +0000 Subject: [Debian-med-packaging] Processing of probabel_0.4.4-1_amd64.changes Message-ID: probabel_0.4.4-1_amd64.changes uploaded successfully to localhost along with the files: probabel_0.4.4-1.dsc probabel_0.4.4.orig.tar.gz probabel_0.4.4-1.debian.tar.xz probabel_0.4.4-1_amd64.deb probabel-examples_0.4.4-1_all.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From andreas at an3as.eu Tue Nov 11 06:27:54 2014 From: andreas at an3as.eu (Andreas Tille) Date: Tue, 11 Nov 2014 07:27:54 +0100 Subject: [Debian-med-packaging] Bug#769050: sra-toolkit should only install binaries, not symlinks to symlinks to binaries In-Reply-To: <20141111004319.GD5374@falafel.plessy.net> References: <20141111001507.GK4015@rzlab.ucr.edu> <20141111004319.GD5374@falafel.plessy.net> Message-ID: <20141111062754.GF13140@an3as.eu> Hi Charles, On Tue, Nov 11, 2014 at 09:43:19AM +0900, Charles Plessy wrote: > It is now on GitHub but there has been a gap. Ths new upstream version needs ngs-sdk which I injected into git://git.debian.org/git/debian-med/ngs-sdk.git but the configure step needs some attention (= does not work in the packaging yet) Kind regards Andreas. -- http://fam-tille.de From ftpmaster at ftp-master.debian.org Tue Nov 11 06:34:00 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 11 Nov 2014 06:34:00 +0000 Subject: [Debian-med-packaging] probabel_0.4.4-1_amd64.changes ACCEPTED into experimental Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 07 Nov 2014 17:44:37 +0100 Source: probabel Binary: probabel probabel-examples Architecture: source amd64 all Version: 0.4.4-1 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: L.C. Karssen Description: probabel - Toolset for Genome-Wide Association Analysis probabel-examples - Example files for ProbABEL Changes: probabel (0.4.4-1) experimental; urgency=medium . [ L.C. Karssen ] * New upstream release containing two bug fixes. * Added override for ./configure options in d/rules to fix the compiler-flags-hidden warning in the Debian Package Tracker. . 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From charles-listes-med-packaging at plessy.org Tue Nov 11 07:50:20 2014 From: charles-listes-med-packaging at plessy.org (Charles Plessy) Date: Tue, 11 Nov 2014 16:50:20 +0900 Subject: [Debian-med-packaging] Bug#769050: sra-toolkit should only install binaries, not symlinks to symlinks to binaries In-Reply-To: <20141111062754.GF13140@an3as.eu> References: <20141111001507.GK4015@rzlab.ucr.edu> <20141111004319.GD5374@falafel.plessy.net> <20141111062754.GF13140@an3as.eu> Message-ID: <20141111075020.GH5374@falafel.plessy.net> Le Tue, Nov 11, 2014 at 07:27:54AM +0100, Andreas Tille a ?crit : > > Ths new upstream version needs ngs-sdk which I injected into > > git://git.debian.org/git/debian-med/ngs-sdk.git > > but the configure step needs some attention (= does not work in the > packaging yet) Thanks Andreas, I will try to work 1 hour on it on the 19th or the 20th if nobody is faster than me. (Trying to put tasks in my agenda to cope with reduced free time). Cheers, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan From ftpmaster at ftp-master.debian.org Tue Nov 11 15:18:34 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 11 Nov 2014 15:18:34 +0000 Subject: [Debian-med-packaging] Processing of r-cran-epi_1.1.67-3_amd64.changes Message-ID: r-cran-epi_1.1.67-3_amd64.changes uploaded successfully to localhost along with the files: r-cran-epi_1.1.67-3.dsc r-cran-epi_1.1.67-3.debian.tar.xz r-cran-epi_1.1.67-3_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From tille at debian.org Tue Nov 11 15:20:27 2014 From: tille at debian.org (Andreas Tille) Date: Tue, 11 Nov 2014 16:20:27 +0100 Subject: [Debian-med-packaging] Bug#769126: unblock: r-cran-epi/1.1.67-3 Message-ID: <20141111152027.3469.85144.reportbug@mail.an3as.eu> Package: release.debian.org Severity: normal User: release.debian.org at packages.debian.org Usertags: unblock Please unblock package r-cran-epi Use dpkg-maintscript-helper to handle symlink to directory conversion Closes: #768279 Debdiff is attached unblock r-cran-epi/1.1.67-3 -- System Information: Debian Release: 7.7 APT prefers stable APT policy: (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.2.0-4-amd64 (SMP w/1 CPU core) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -------------- next part -------------- A non-text attachment was scrubbed... Name: r-cran-epi_1.1.67-2_1.1.67-3.debdiff Type: text/x-diff Size: 935 bytes Desc: not available URL: From ftpmaster at ftp-master.debian.org Tue Nov 11 15:26:17 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 11 Nov 2014 15:26:17 +0000 Subject: [Debian-med-packaging] r-cran-epi_1.1.67-3_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 11 Nov 2014 15:40:12 +0100 Source: r-cran-epi Binary: r-cran-epi Architecture: source amd64 Version: 1.1.67-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: r-cran-epi - GNU R epidemiological analysis Closes: 768279 Changes: r-cran-epi (1.1.67-3) unstable; urgency=medium . * Use dpkg-maintscript-helper to handle symlink to directory conversion Closes: #768279 Checksums-Sha1: 5498a2321c9966ae04574a6a0fb175febc5cbe9b 2021 r-cran-epi_1.1.67-3.dsc 259efbb1f34c044bb9d08c84d72363b48734c617 3748 r-cran-epi_1.1.67-3.debian.tar.xz d31dc6d3d4d5b8bf6a0bd0ff9767534648cb6cc9 1689484 r-cran-epi_1.1.67-3_amd64.deb Checksums-Sha256: a0731d6b44bdb0d9c9a99f57de1477803d5edf7ce1d1281e4d2caf213d6d83bb 2021 r-cran-epi_1.1.67-3.dsc 7906ba69fd6a1791599c5d24735b49f18f5bb1192e96e01e842626f9ad847805 3748 r-cran-epi_1.1.67-3.debian.tar.xz adcf3a283b40b63133ca7f97c4bac648db03d15f00fbe582926bb7573b2b292d 1689484 r-cran-epi_1.1.67-3_amd64.deb Files: ba73ca6bc9cc9238561a976c7535de66 2021 gnu-r optional r-cran-epi_1.1.67-3.dsc f9f88ae49753a40ba4fa94355557f35d 3748 gnu-r optional r-cran-epi_1.1.67-3.debian.tar.xz 920a38da1864b1dce280d06d56d5f5ec 1689484 gnu-r optional r-cran-epi_1.1.67-3_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJUYigmAAoJEFeKBJTRxkbR9asP/RhG3K5qnAqnU+cncfC4WFtY UoZlrAc6LSj+RW4E8+lgAZe+QRVqK6QYx3mLgWqb8DBVD7rJIULqH/doPfTFJlm/ 6R8urRzdfhtGhcPsL1oDtO5Nf+TXs6Rslok6LxcNBiHCF3yIf29c91zQdePtUUX+ gDdHG3D8rc6HT9xiLGo0uHtrZuYbt48ayQPy9SmosXbuZ4DLxwPX6ceh8YbsTMD6 ARWhWC6Ucbz6FlYgm8tcsLJh3rs1awl93sT8tMUGwLHVfS62Yv/rTRH4LoFivTgt nQ02e6GfJg56OR+ZXTCFp2ua0E0IEzBIqChHkOgkWk/bWJYJq5oto1HvzvwfwK2e wSU9UCU0AMbq1KadnO8hMlStNvqPR3oEBCGtpKmksfU3BVeGtqrFSRS/6JxnkLzL oezVBT1uHJWhpNGm9wr17rgOx6cxhCGWJTfUFaku6nk3LB8QJtwV5VOG0R6Cjg0s hhBp9+tbSQPUJ/1WAGwP78JocTbCqqOO3hoBICL/IczSstSHYpji+6qKaEcUxA/L +eY9Jf22TuHBeaGDfujnoP4XdBfBTk3nqUYXyBimItdl19yY/vHKf/r9Pc/x4YEG s8YswrtXOg//izxfOqFC366nLnYG9Ql1gQLHu/J1jU9zoPL0mBoVolSDA8xe1W0d 73LioPzMInuZYZ8/osE3 =+qQg -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From owner at bugs.debian.org Tue Nov 11 15:27:13 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Tue, 11 Nov 2014 15:27:13 +0000 Subject: [Debian-med-packaging] Bug#768279: marked as done (r-cran-epi: unhandled symlink to directory conversion: /usr/lib/R/site-library/Epi/doc) References: <20141106084718.13115.43869.reportbug@zam581.zam.kfa-juelich.de> Message-ID: Your message dated Tue, 11 Nov 2014 15:26:17 +0000 with message-id and subject line Bug#768279: fixed in r-cran-epi 1.1.67-3 has caused the Debian Bug report #768279, regarding r-cran-epi: unhandled symlink to directory conversion: /usr/lib/R/site-library/Epi/doc to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 768279: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=768279 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Andreas Beckmann Subject: r-cran-epi: unhandled symlink to directory conversion: /usr/lib/R/site-library/Epi/doc Date: Thu, 06 Nov 2014 09:47:18 +0100 Size: 43874 URL: -------------- next part -------------- An embedded message was scrubbed... From: Andreas Tille Subject: Bug#768279: fixed in r-cran-epi 1.1.67-3 Date: Tue, 11 Nov 2014 15:26:17 +0000 Size: 5137 URL: From cjwatson at debian.org Tue Nov 11 16:37:55 2014 From: cjwatson at debian.org (Colin Watson) Date: Tue, 11 Nov 2014 16:37:55 +0000 Subject: [Debian-med-packaging] Bug#768769: plastimatch: FTBFS in jessie: Tests failures In-Reply-To: <20141111062002.GE13140@an3as.eu> References: <20141109072656.GA19263@xanadu.blop.info> <1415649708.67741.YahooMailNeo@web162104.mail.bf1.yahoo.com> <20141111062002.GE13140@an3as.eu> Message-ID: <20141111163755.GA5306@riva.ucam.org> On Tue, Nov 11, 2014 at 07:20:02AM +0100, Andreas Tille wrote: > On Mon, Nov 10, 2014 at 12:01:48PM -0800, Gregory Sharp wrote: > > This is a bug in upstream, where the regression test > > is missing a dependency. > > I'm not sure what this really means but if it is a missing dependency do > you want to express that we can fix this by just another Build-Depends > and if yes which one? Are you able to commit a patch to SVN? I think he means cmake dependencies for the tests in question; they're failing in parallel builds. Here's a patch that fixes things for me: * Add rect-10-roi-1 and rect-11-roi dependencies to plm-union test; add plm-convert-dicom-a dependency to plm-convert-cxt test (closes: #768769). diff -Nru plastimatch-1.5.16+dfsg/debian/patches/series plastimatch-1.5.16+dfsg/debian/patches/series --- plastimatch-1.5.16+dfsg/debian/patches/series 1970-01-01 01:00:00.000000000 +0100 +++ plastimatch-1.5.16+dfsg/debian/patches/series 2014-11-11 16:17:06.000000000 +0000 @@ -0,0 +1 @@ +test-depends.patch diff -Nru plastimatch-1.5.16+dfsg/debian/patches/test-depends.patch plastimatch-1.5.16+dfsg/debian/patches/test-depends.patch --- plastimatch-1.5.16+dfsg/debian/patches/test-depends.patch 1970-01-01 01:00:00.000000000 +0100 +++ plastimatch-1.5.16+dfsg/debian/patches/test-depends.patch 2014-11-11 16:18:50.000000000 +0000 @@ -0,0 +1,29 @@ +Description: Fix test dependencies to support parallel testing +Author: Colin Watson +Bug-Debian: https://bugs.debian.org/768769 +Forwarded: no +Last-Update: 2014-11-11 + +Index: b/Testing/CMakeLists.txt +=================================================================== +--- a/Testing/CMakeLists.txt ++++ b/Testing/CMakeLists.txt +@@ -1775,7 +1775,8 @@ + "1648003" + "1648003" + ) +-set_tests_properties (plm-convert-cxt PROPERTIES DEPENDS plm-convert-dicom-c) ++set_tests_properties (plm-convert-cxt PROPERTIES ++ DEPENDS "plm-convert-dicom-a;plm-convert-dicom-c") + set_tests_properties (plm-convert-cxt-stats PROPERTIES DEPENDS plm-convert-cxt) + set_tests_properties (plm-convert-cxt-check PROPERTIES + DEPENDS plm-convert-cxt-stats) +@@ -3290,7 +3291,7 @@ + "1271" + ) + set_tests_properties (plm-union +- PROPERTIES DEPENDS "rect-10-mask-1;rect-11-mask") ++ PROPERTIES DEPENDS "rect-10-mask-1;rect-10-roi-1;rect-11-mask;rect-11-roi") + set_tests_properties (plm-union-stats PROPERTIES DEPENDS plm-union) + set_tests_properties (plm-union-check PROPERTIES DEPENDS plm-union-stats) + Thanks, -- Colin Watson [cjwatson at debian.org] From owner at bugs.debian.org Tue Nov 11 18:15:16 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Tue, 11 Nov 2014 18:15:16 +0000 Subject: [Debian-med-packaging] Processed: tagging 768769 References: <1415729518-3882-bts-wrar@debian.org> Message-ID: Processing commands for control at bugs.debian.org: > tags 768769 + patch Bug #768769 [src:plastimatch] plastimatch: FTBFS in jessie: Tests failures Added tag(s) patch. > thanks Stopping processing here. Please contact me if you need assistance. -- 768769: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=768769 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From anbe at debian.org Tue Nov 11 19:47:40 2014 From: anbe at debian.org (Andreas Beckmann) Date: Tue, 11 Nov 2014 20:47:40 +0100 Subject: [Debian-med-packaging] Bug#769151: libdcmtk4-dev: fails to upgrade from 'sid' - trying to overwrite /usr/include/dcmtk/dcmwlm/wltypdef.h Message-ID: <20141111194740.23271.10289.reportbug@zam581.zam.kfa-juelich.de> Package: libdcmtk4-dev Version: 3.6.1~20140617-3 Severity: serious User: debian-qa at lists.debian.org Usertags: piuparts Hi, during a test with piuparts I noticed your package fails to upgrade from 'sid' to 'experimental'. It installed fine in 'sid', then the upgrade to 'experimental' fails because it tries to overwrite other packages files without declaring a Breaks+Replaces relation. See policy 7.6 at http://www.debian.org/doc/debian-policy/ch-relationships.html#s-replaces >From the attached log (scroll to the bottom...): Selecting previously unselected package libdcmtk4. Preparing to unpack .../libdcmtk4_3.6.1~20140617-3_amd64.deb ... Unpacking libdcmtk4 (3.6.1~20140617-3) ... Selecting previously unselected package libdcmtk4-dev. Preparing to unpack .../libdcmtk4-dev_3.6.1~20140617-3_amd64.deb ... Unpacking libdcmtk4-dev (3.6.1~20140617-3) ... dpkg: error processing archive /var/cache/apt/archives/libdcmtk4-dev_3.6.1~20140617-3_amd64.deb (--unpack): trying to overwrite '/usr/include/dcmtk/dcmwlm/wltypdef.h', which is also in package libdcmtk2-dev 3.6.0-15+b1 dpkg-deb: error: subprocess paste was killed by signal (Broken pipe) Errors were encountered while processing: /var/cache/apt/archives/libdcmtk4-dev_3.6.1~20140617-3_amd64.deb Did you consider renaming the -dev package to just libdcmtk-dev? This could simplify transitions ... cheers, Andreas -------------- next part -------------- A non-text attachment was scrubbed... Name: libdcmtk2-dev=3.6.0-15+b1_libdcmtk4-dev=3.6.1~20140617-3.log.gz Type: application/gzip Size: 12526 bytes Desc: not available URL: From ftpmaster at ftp-master.debian.org Wed Nov 12 06:31:35 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 12 Nov 2014 06:31:35 +0000 Subject: [Debian-med-packaging] Processing of r-cran-epi_1.1.67-4_amd64.changes Message-ID: r-cran-epi_1.1.67-4_amd64.changes uploaded successfully to localhost along with the files: r-cran-epi_1.1.67-4.dsc r-cran-epi_1.1.67-4.debian.tar.xz r-cran-epi_1.1.67-4_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From tille at debian.org Wed Nov 12 06:31:23 2014 From: tille at debian.org (Andreas Tille) Date: Wed, 12 Nov 2014 07:31:23 +0100 Subject: [Debian-med-packaging] Bug#769205: unblock: r-cran-epi/1.1.67-4 Message-ID: <20141112063123.23847.10630.reportbug@mail.an3as.eu> Package: release.debian.org Severity: normal User: release.debian.org at packages.debian.org Usertags: unblock Please unblock package r-cran-epi * Add Pre-Depends: dpkg (>= 1.17.2) which was missing from last upload and is needed to really close #768279 * Upload to testing-proposed-updates due to an upgraded r-base-core in unstable The attached debdiff is between 1.1.67-2 which is currently in testing and the latest upload to t-p-u to see the full set of changes in testing. Thanks for your work on the Debian release Andreas. unblock r-cran-epi/1.1.67-4 -- System Information: Debian Release: 7.7 APT prefers stable APT policy: (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.2.0-4-amd64 (SMP w/1 CPU core) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -------------- next part -------------- A non-text attachment was scrubbed... Name: r-cran-epi_1.1.67-2_1.1.67-4.debdiff Type: text/x-diff Size: 1755 bytes Desc: not available URL: From ftpmaster at ftp-master.debian.org Wed Nov 12 06:34:02 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 12 Nov 2014 06:34:02 +0000 Subject: [Debian-med-packaging] r-cran-epi_1.1.67-4_amd64.changes ACCEPTED into testing-proposed-updates Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 12 Nov 2014 06:59:06 +0100 Source: r-cran-epi Binary: r-cran-epi Architecture: source amd64 Version: 1.1.67-4 Distribution: testing-proposed-updates Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: r-cran-epi - GNU R epidemiological analysis Changes: r-cran-epi (1.1.67-4) testing-proposed-updates; urgency=medium . * Pre-Depends: dpkg (>= 1.17.2) * Upload to testing-proposed-updates due to an upgraded r-base-core in unstable Checksums-Sha1: cd7eef6dc8dc412faa9e0eb411f74c8ce945bf70 2021 r-cran-epi_1.1.67-4.dsc 42a323a661e2a8bf5ea2288b2b3beaf2c695458d 3816 r-cran-epi_1.1.67-4.debian.tar.xz 78678301adf6ebdf0453b072452dcf6a41da9e73 1689600 r-cran-epi_1.1.67-4_amd64.deb Checksums-Sha256: e9b3b1b9bbdebed87b68bc88ef178f289988ca3979246fd73080472d3eab8477 2021 r-cran-epi_1.1.67-4.dsc a5c3c2b989e86a84e144b3089545429e2924814e3fd89ae87235a3d682e777c3 3816 r-cran-epi_1.1.67-4.debian.tar.xz b89c5b6f27c9248117c156bf112a8341c0fdb7b83872d7c168fcf120d7c0e581 1689600 r-cran-epi_1.1.67-4_amd64.deb Files: 3ae77dc34325fa944bdddfe288837522 2021 gnu-r optional r-cran-epi_1.1.67-4.dsc c276664cc3413a46d91fd338b7736562 3816 gnu-r optional r-cran-epi_1.1.67-4.debian.tar.xz df4dd39b4cd64aaf848bfdbcdd2de866 1689600 gnu-r optional r-cran-epi_1.1.67-4_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJUYvmsAAoJEFeKBJTRxkbRyR0P/0lQJhKvNmIB9AI0QAuWFGg3 9uC6L4aLqGlrFksUv/kl3GcdgQovNYqLwBeGVsO9pvjJiEQJjVWLgE/0BuDzoWUr wz/HEBv5KjBxtIBMY+eLXU8kos2GkHOZUbj0mgMREa5GTSWsEQwZzTSYujey6QZU fN+xnAjpOURLvxp1uweZ5E2YreNTen/lYKI5UfmY1nSOJZ1XAvbww2g3KsdIDVns L9zQZNqTrFB/tJMSJ3AO/xdeI6NY3FQ0qoY/0WfvWgk07WP4IuS3AfiMJzuio50G O2DkyRTfo5Xc8IpnuGR+T6jaz7PyYJmYBNJxxI0WnZPph9T3ZC3eB31U2dmAlBrq 5lYub5t/EucvgxW9fbm6rtuXepKF95WbHzpq93HPi6gOtdj1JH7RrCWImJ/wZZfa bf4eiO32mLYdDr7cvhlNcLIIJKCfvyiGInZpb0EYwj65EjYyJMPdj3UWrm7U1ejY eWFJQr/bWQ2hMUSNnx82ExjybENu4c3je1Ag+7FT8aMQbDLweE4xmhIi9599M3XC 5N1fI6aOyPU3LtJ0hf0gfsr2Sppa3XCYyZslqoIP8Q9uG9gBHVrAP8bYeRa3tsAQ RVTtz1btBsZq2gFqt+X4AnCNOpiG+9HhYT0rA0YaGQrbHusvGno2uBlsoW2mndfh 01XM6MP1tpPczQAKi7B6 =5cMr -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From malat at debian.org Wed Nov 12 08:11:27 2014 From: malat at debian.org (Mathieu Malaterre) Date: Wed, 12 Nov 2014 09:11:27 +0100 Subject: [Debian-med-packaging] Bug#768877: libgdcm2-dev: CMake reports that GDCM is not installed In-Reply-To: <20141109205031.6537.83056.reportbug@word> References: <20141109205031.6537.83056.reportbug@word> Message-ID: Control: reassign -1 cmake 3.0.2-1 On Sun, Nov 9, 2014 at 9:50 PM, carandraug wrote: > $ cmake --find-package -DNAME=GDCM -DLANGUAGE=CXX -DCOMPILER_ID=GNU -DMODE=COMPILE > GDCM not found. > CMake Error: Problem processing arguments. Aborting. I do not believe the issue is within GDCM codebase: Steps: $ mkdir /tmp/p && cd /tmp/p $ sudo apt-get install libgdcm2-dev $ cat CMakeLists.txt cmake_minimum_required(VERSION 3.0) find_package(GDCM REQUIRED) message("found: ${GDCM_FOUND}") $ cmake . | grep found found: 1 My guess is that something recently broke in cmake. For reference: $ cmake --debug-output --trace --find-package -DNAME=GDCM -DLANGUAGE=CXX -DCOMPILER_ID=GNU -DMODE=COMPILE [...] /usr/share/cmake-3.0/Modules/CMakeCXXInformation.cmake(297): set(CMAKE_CXX_INFORMATION_LOADED 1 ) /usr/share/cmake-3.0/Modules/CMakeFindPackageMode.cmake(114): function(set_compile_flags_var _packageName ) /usr/share/cmake-3.0/Modules/CMakeFindPackageMode.cmake(155): function(set_link_flags_var _packageName ) /usr/share/cmake-3.0/Modules/CMakeFindPackageMode.cmake(178): find_package(${NAME} QUIET ) /usr/share/cmake-3.0/Modules/CMakeFindPackageMode.cmake(180): set(PACKAGE_FOUND FALSE ) /usr/share/cmake-3.0/Modules/CMakeFindPackageMode.cmake(182): string(TOUPPER ${NAME} UPPERCASE_NAME ) /usr/share/cmake-3.0/Modules/CMakeFindPackageMode.cmake(184): if(${NAME}_FOUND OR ${UPPERCASE_NAME}_FOUND ) /usr/share/cmake-3.0/Modules/CMakeFindPackageMode.cmake(199): set(PACKAGE_QUIET ${SILENT} ) GDCM not found. CMake Error: Problem processing arguments. Aborting. From owner at bugs.debian.org Wed Nov 12 08:15:11 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Wed, 12 Nov 2014 08:15:11 +0000 Subject: [Debian-med-packaging] Processed: Re: Bug#768877: libgdcm2-dev: CMake reports that GDCM is not installed References: <20141109205031.6537.83056.reportbug@word> Message-ID: Processing control commands: > reassign -1 cmake 3.0.2-1 Bug #768877 [libgdcm2-dev] libgdcm2-dev: CMake reports that GDCM is not installed Bug reassigned from package 'libgdcm2-dev' to 'cmake'. No longer marked as found in versions gdcm/2.4.4-3. Ignoring request to alter fixed versions of bug #768877 to the same values previously set Bug #768877 [cmake] libgdcm2-dev: CMake reports that GDCM is not installed Marked as found in versions cmake/3.0.2-1. -- 768877: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=768877 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From ftpmaster at ftp-master.debian.org Wed Nov 12 08:21:43 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 12 Nov 2014 08:21:43 +0000 Subject: [Debian-med-packaging] Processing of plastimatch_1.5.16+dfsg-2_amd64.changes Message-ID: plastimatch_1.5.16+dfsg-2_amd64.changes uploaded successfully to localhost along with the files: plastimatch_1.5.16+dfsg-2.dsc plastimatch_1.5.16+dfsg-2.debian.tar.xz plastimatch_1.5.16+dfsg-2_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From tille at debian.org Wed Nov 12 09:00:18 2014 From: tille at debian.org (Andreas Tille) Date: Wed, 12 Nov 2014 10:00:18 +0100 Subject: [Debian-med-packaging] Bug#769226: unblock: plastimatch/1.5.16+dfsg-2 Message-ID: <20141112090018.27798.67922.reportbug@mail.an3as.eu> Package: release.debian.org Severity: normal User: release.debian.org at packages.debian.org Usertags: unblock Please unblock package plastimatch Add needed cmake dependencies to enable parallel builds Closes: #768769 debdiff attached unblock plastimatch/1.5.16+dfsg-2 -- System Information: Debian Release: 7.7 APT prefers stable APT policy: (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.2.0-4-amd64 (SMP w/1 CPU core) Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash -------------- next part -------------- A non-text attachment was scrubbed... Name: plastimatch_1.5.16+dfsg-1_1.5.16+dfsg-2.debdiff Type: text/x-diff Size: 2386 bytes Desc: not available URL: From ftpmaster at ftp-master.debian.org Wed Nov 12 09:21:04 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Wed, 12 Nov 2014 09:21:04 +0000 Subject: [Debian-med-packaging] plastimatch_1.5.16+dfsg-2_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 12 Nov 2014 08:24:38 +0100 Source: plastimatch Binary: plastimatch Architecture: source amd64 Version: 1.5.16+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: plastimatch - medical image reconstruction and registration Closes: 768769 Changes: plastimatch (1.5.16+dfsg-2) unstable; urgency=medium . * Add needed cmake dependencies to enable parallel builds (thanks to Colin Watson for the patch) Closes: #768769 Checksums-Sha1: 921525e709dcf57f2bf8844962298830c083a945 2301 plastimatch_1.5.16+dfsg-2.dsc 70df4762dd24707d4c3ab1fd0a46d338a0012192 7888 plastimatch_1.5.16+dfsg-2.debian.tar.xz bc9fd9c6e008e56004dbf61ddaaf39a6f4c1d2f1 6628120 plastimatch_1.5.16+dfsg-2_amd64.deb Checksums-Sha256: c76394df0afc2f4e5df210e219f0d82701b55c80ff33c16b55ed50b16f8863d3 2301 plastimatch_1.5.16+dfsg-2.dsc 5ebead64bb640d8e08918da1f711a0851d1606d37f4dee2b1391656d432990ba 7888 plastimatch_1.5.16+dfsg-2.debian.tar.xz 9d0cc6c5fa8ccbac6c37d40602f5874b6f678d4067569a4e2c5cc8eaaac7d4b2 6628120 plastimatch_1.5.16+dfsg-2_amd64.deb Files: e2736e279ba7e0629a3283844466a86e 2301 science optional plastimatch_1.5.16+dfsg-2.dsc fe676855a5722891cc4d90812abebcd0 7888 science optional plastimatch_1.5.16+dfsg-2.debian.tar.xz b6663af9f0fc0241b88a85f1cca022ae 6628120 science optional plastimatch_1.5.16+dfsg-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJUYxJAAAoJEFeKBJTRxkbRR2kP/RX3f9UXNBCk/QfT77D9Mz5J 9OUpzbxYo07/hZROUpvkWkZ/1e9zLhG9cS6vT42du2RbcC+kTRNR3lrs1Lc+TS34 vNrBaNP1c1bO14QqIt/9FBwgxyM2oLTkRdoMMmaxUq69GsBBzt7uSol5yU0CsJMl +vlndQ7GztGWQVxgBDYl99Upq7whUb8qnRnaf8bNdy+bO8iWcn0bcJ4qtUnt8d51 x0/5PmUmMyoIBgUg0UAejdyBwKcBmM1jkrE4WgmtiTKo4Q5rEUNUHwewtHHPW2Dj rwGUUEC4BmoEzB+fC7lLtEKt18SE8AOcSscTU6I9kUyiE7qyluwDTNf3DIu7hzJ9 VW2JySK60EaukBiw9EkHpEB59qm0n9F6IcOIPwTCdzmm9a/59UjdJvtoSBK2w661 HEWuA+Fc7xgURqedDhLi+3RXQfYr75/DycMA5GfprybttJJUmjl+N7SmztvcCBlS bvTFzS1jTS99nQ4YpU40npST+rDQl3detBEAh86IW1ba3+9TJYtzAwa1GXBnH4gR QJY8RGr8kxMmE6/QOz+5NXnySjzjkIbhbp3FTeXbaIzxH8WHYKlmo28HeA2qAn5E HxUfbHsLRgqjt6NmWGvByPxP44NuNpVe7b91zVhzYAVATwTSWxNIpJLi9akTRXyG v2LrwXf7WZXeQfszIDfs =Sgeg -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From owner at bugs.debian.org Wed Nov 12 09:21:49 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Wed, 12 Nov 2014 09:21:49 +0000 Subject: [Debian-med-packaging] Bug#768769: marked as done (plastimatch: FTBFS in jessie: Tests failures) References: <20141109072656.GA19263@xanadu.blop.info> Message-ID: Your message dated Wed, 12 Nov 2014 09:21:04 +0000 with message-id and subject line Bug#768769: fixed in plastimatch 1.5.16+dfsg-2 has caused the Debian Bug report #768769, regarding plastimatch: FTBFS in jessie: Tests failures to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 768769: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=768769 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Lucas Nussbaum Subject: plastimatch: FTBFS in jessie: Tests failures Date: Sun, 9 Nov 2014 08:26:56 +0100 Size: 2993 URL: -------------- next part -------------- An embedded message was scrubbed... From: Andreas Tille Subject: Bug#768769: fixed in plastimatch 1.5.16+dfsg-2 Date: Wed, 12 Nov 2014 09:21:04 +0000 Size: 5276 URL: From officeawardukboard101 at gmail.com Wed Nov 12 10:10:03 2014 From: officeawardukboard101 at gmail.com (From UK /2014/2015 Promotions Online Award) Date: Wed, 12 Nov 2014 10:10:03 +0000 (UTC) Subject: [Debian-med-packaging] Re Kindly Peruse the Attached Letter and Follow the instruction Therein!!!Contact Claim Agent Message-ID: <1182754084.105214.1415787003851.JavaMail.yahoo@jws10919.mail.sg3.yahoo.com> -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: UK- SA AWARD ONLINE ATTACHMENT!!!.doc Type: application/msword Size: 114176 bytes Desc: not available URL: From owner at bugs.debian.org Wed Nov 12 10:39:05 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Wed, 12 Nov 2014 10:39:05 +0000 Subject: [Debian-med-packaging] Processed: lower severity References: Message-ID: Processing commands for control at bugs.debian.org: > package: src:mapsembler2 Limiting to bugs with field 'package' containing at least one of 'src:mapsembler2' Limit currently set to 'package':'src:mapsembler2' > severity 765285 important Bug #765285 [src:mapsembler2] mapsembler2: FTBFS on non-x86: xmmintrin.h: No such file or directory Severity set to 'important' from 'serious' > thanks Stopping processing here. Please contact me if you need assistance. -- 765285: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=765285 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From gustiar at kuburayakab.go.id Wed Nov 12 01:25:39 2014 From: gustiar at kuburayakab.go.id (Ong Eng) Date: Wed, 12 Nov 2014 08:25:39 +0700 (WIT) Subject: [Debian-med-packaging] Business Overture. Message-ID: <374228143.21451.1415755539296.JavaMail.root@kuburayakab.go.id> I have proposition to help invest and buy equipments in your country:Email:ongenghuat005 at gmail.com From noreply at release.debian.org Wed Nov 12 16:39:20 2014 From: noreply at release.debian.org (Debian testing watch) Date: Wed, 12 Nov 2014 16:39:20 +0000 Subject: [Debian-med-packaging] hhsuite 2.0.16-5 MIGRATED to testing Message-ID: FYI: The status of the hhsuite source package in Debian's testing distribution has changed. Previous version: 2.0.16-3 Current version: 2.0.16-5 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From anbe at debian.org Wed Nov 12 23:11:22 2014 From: anbe at debian.org (Andreas Beckmann) Date: Thu, 13 Nov 2014 00:11:22 +0100 Subject: [Debian-med-packaging] Bug#769348: biomaj-watcher: switch to tomcat8 Message-ID: <20141112231122.10327.849.reportbug@zam581.zam.kfa-juelich.de> Package: biomaj-watcher Version: 1.2.2-1 Severity: serious Tags: sid tomcat6 is gone from sid. Please switch to tomcat8. Andreas From andreas at an3as.eu Thu Nov 13 06:52:30 2014 From: andreas at an3as.eu (Andreas Tille) Date: Thu, 13 Nov 2014 07:52:30 +0100 Subject: [Debian-med-packaging] Bug#768710: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting In-Reply-To: <20141109070704.GA16900@xanadu.blop.info> References: <20141109070704.GA16900@xanadu.blop.info> Message-ID: <20141113065230.GC24111@an3as.eu> Hi folks, is anybody up for fixing this one? As I said in my previous mail I'm busy with real life and release team will probably simply kick the package out from testing if this bug is not closed and no unblock request will be filed. Everybody in the team can work on this! Thanks Andreas. On Sun, Nov 09, 2014 at 08:07:04AM +0100, Lucas Nussbaum wrote: > Source: biojava3-live > Version: 3.1.0+dfsg-1 > Severity: serious > Tags: jessie sid > User: debian-qa at lists.debian.org > Usertags: qa-ftbfs-20141108 qa-ftbfs > Justification: FTBFS in jessie on amd64 > > Hi, > > During a rebuild of all packages in jessie (in a jessie chroot, not a > sid chroot), your package failed to build on amd64. > > Relevant part (hopefully): > > make[1]: Entering directory '/?BUILDDIR?/biojava3-live-3.1.0+dfsg' > > cd biojava3-forester && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-forester/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-forester/classes > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-forester/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 332 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-forester/classes > > [javac] Note: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-forester/src/main/java/org/forester/archaeopteryx/PdfExporter.java uses or overrides a deprecated API. > > [javac] Note: Recompile with -Xlint:deprecation for details. > > [javac] Note: Some input files use unchecked or unsafe operations. > > [javac] Note: Recompile with -Xlint:unchecked for details. > > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-forester/src/main/resources does not exist. > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-forester.jar > > > > BUILD SUCCESSFUL > > Total time: 12 seconds > > cd biojava3-core && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-core/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-core/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-core/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 140 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-core/classes > > [copy] Copying 1 file to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-core/classes > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-core.jar > > > > BUILD SUCCESSFUL > > Total time: 5 seconds > > cd biojava3-phylo && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-phylo/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-phylo/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-phylo/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 10 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-phylo/classes > > [copy] Copying 1 file to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-phylo/classes > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-phylo.jar > > > > BUILD SUCCESSFUL > > Total time: 2 seconds > > cd biojava3-alignment && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-alignment/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-alignment/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-alignment/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 66 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-alignment/classes > > [copy] Copying 20 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-alignment/classes > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-alignment.jar > > > > BUILD SUCCESSFUL > > Total time: 4 seconds > > cd biojava3-aa-prop && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-aa-prop/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-aa-prop/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 31 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes > > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/xml/package-info.class > > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/profeat/convertor/package-info.class > > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/package-info.class > > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes/org/biojava3/aaproperties/profeat/package-info.class > > [copy] Copying 10 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-aa-prop/classes > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-aa-prop.jar > > > > BUILD SUCCESSFUL > > Total time: 3 seconds > > cd biojava3-genome && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-genome/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-genome/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-genome/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 27 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-genome/classes > > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-genome/src/main/resources does not exist. > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-genome.jar > > > > BUILD SUCCESSFUL > > Total time: 3 seconds > > cd biojava3-sequencing && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-sequencing/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-sequencing/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-sequencing/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 19 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-sequencing/classes > > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-sequencing/classes/org/biojava3/sequencing/io/fastq/package-info.class > > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-sequencing/src/main/resources does not exist. > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-sequencing.jar > > > > BUILD SUCCESSFUL > > Total time: 2 seconds > > cd biojava3-structure && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 342 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure/classes > > [javac] Note: Some input files use or override a deprecated API. > > [javac] Note: Recompile with -Xlint:deprecation for details. > > [javac] Note: Some input files use unchecked or unsafe operations. > > [javac] Note: Recompile with -Xlint:unchecked for details. > > [copy] Copying 63 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure/classes > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-structure.jar > > > > BUILD SUCCESSFUL > > Total time: 10 seconds > > cd biojava3-structure-gui && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure-gui/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure-gui/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure-gui/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 109 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure-gui/classes > > [javac] Note: Some input files use unchecked or unsafe operations. > > [javac] Note: Recompile with -Xlint:unchecked for details. > > [copy] Copying 48 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-structure-gui/classes > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-structure-gui.jar > > > > BUILD SUCCESSFUL > > Total time: 6 seconds > > cd biojava3-modfinder && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-modfinder/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-modfinder/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-modfinder/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 21 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-modfinder/classes > > [copy] Copying 1 file to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-modfinder/classes > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-modfinder.jar > > > > BUILD SUCCESSFUL > > Total time: 2 seconds > > cd biojava3-protein-disorder && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-protein-disorder/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-protein-disorder/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-protein-disorder/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 13 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-protein-disorder/classes > > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-protein-disorder/classes/org/biojava3/data/sequence/package-info.class > > [javac] Creating empty /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-protein-disorder/classes/org/biojava3/ronn/package-info.class > > [copy] Copying 10 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-protein-disorder/classes > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-protein-disorder.jar > > > > BUILD SUCCESSFUL > > Total time: 2 seconds > > cd biojava3-ws && ant jar > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-ws/build.xml > > > > compile: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-ws/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-ws/build.xml:72: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 20 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/build/biojava3-ws/classes > > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-ws/src/main/resources does not exist. > > > > jar: > > [jar] Building jar: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/dist/biojava3-ws.jar > > > > BUILD SUCCESSFUL > > Total time: 2 seconds > > # make doc > > rm -rf biojavadoc > > mkdir biojavadoc > > cp -r biojava3-*/src biojavadoc/ > > sed -e 's/BJLIB/biojava/g' debian/build.xml > biojavadoc/build.xml > > cd biojavadoc && ant javadocs > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/build.xml > > > > javadocs: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/javadoc > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/doc/biojava > > [javadoc] Generating Javadoc > > [javadoc] Javadoc execution > > [javadoc] Loading source files for package org.biojava.bio.structure... > > [javadoc] Loading source files for package org.biojava.bio.structure.align... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.ce... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.client... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.events... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.fatcat... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.fatcat.calc... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.gui... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.gui.aligpanel... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.gui.autosuggest... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.gui.jmol... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.helper... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.model... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.pairwise... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.seq... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.util... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.webstart... > > [javadoc] Loading source files for package org.biojava.bio.structure.align.xml... > > [javadoc] Loading source files for package org.biojava.bio.structure.asa... > > [javadoc] Loading source files for package org.biojava.bio.structure.cath... > > [javadoc] Loading source files for package org.biojava.bio.structure.domain... > > [javadoc] Loading source files for package org.biojava.bio.structure.domain.pdp... > > [javadoc] Loading source files for package org.biojava.bio.structure.gui... > > [javadoc] Loading source files for package org.biojava.bio.structure.gui.events... > > [javadoc] Loading source files for package org.biojava.bio.structure.gui.util... > > [javadoc] Loading source files for package org.biojava.bio.structure.gui.util.color... > > [javadoc] Loading source files for package org.biojava.bio.structure.io... > > [javadoc] Loading source files for package org.biojava.bio.structure.io.mmcif... > > [javadoc] Loading source files for package org.biojava.bio.structure.io.mmcif.chem... > > [javadoc] Loading source files for package org.biojava.bio.structure.io.mmcif.model... > > [javadoc] Loading source files for package org.biojava.bio.structure.io.sifts... > > [javadoc] Loading source files for package org.biojava.bio.structure.io.util... > > [javadoc] Loading source files for package org.biojava.bio.structure.jama... > > [javadoc] Loading source files for package org.biojava.bio.structure.math... > > [javadoc] Loading source files for package org.biojava.bio.structure.quaternary... > > [javadoc] Loading source files for package org.biojava.bio.structure.quaternary.io... > > [javadoc] Loading source files for package org.biojava.bio.structure.rcsb... > > [javadoc] Loading source files for package org.biojava.bio.structure.scop... > > [javadoc] Loading source files for package org.biojava.bio.structure.scop.server... > > [javadoc] Loading source files for package org.biojava.bio.structure.secstruc... > > [javadoc] Loading source files for package org.biojava.bio.structure.server... > > [javadoc] Loading source files for package org.biojava3.aaproperties... > > [javadoc] Loading source files for package org.biojava3.aaproperties.profeat... > > [javadoc] Loading source files for package org.biojava3.aaproperties.profeat.convertor... > > [javadoc] Loading source files for package org.biojava3.aaproperties.xml... > > [javadoc] Loading source files for package org.biojava3.alignment... > > [javadoc] Loading source files for package org.biojava3.alignment.aaindex... > > [javadoc] Loading source files for package org.biojava3.alignment.io... > > [javadoc] Loading source files for package org.biojava3.alignment.routines... > > [javadoc] Loading source files for package org.biojava3.alignment.template... > > [javadoc] Loading source files for package org.biojava3.core.exceptions... > > [javadoc] Loading source files for package org.biojava3.core.sequence... > > [javadoc] Loading source files for package org.biojava3.core.sequence.compound... > > [javadoc] Loading source files for package org.biojava3.core.sequence.edits... > > [javadoc] Loading source files for package org.biojava3.core.sequence.features... > > [javadoc] Loading source files for package org.biojava3.core.sequence.io... > > [javadoc] Loading source files for package org.biojava3.core.sequence.io.template... > > [javadoc] Loading source files for package org.biojava3.core.sequence.io.util... > > [javadoc] Loading source files for package org.biojava3.core.sequence.loader... > > [javadoc] Loading source files for package org.biojava3.core.sequence.location... > > [javadoc] Loading source files for package org.biojava3.core.sequence.location.template... > > [javadoc] Loading source files for package org.biojava3.core.sequence.storage... > > [javadoc] Loading source files for package org.biojava3.core.sequence.template... > > [javadoc] Loading source files for package org.biojava3.core.sequence.transcription... > > [javadoc] Loading source files for package org.biojava3.core.sequence.views... > > [javadoc] Loading source files for package org.biojava3.core.util... > > [javadoc] Loading source files for package org.biojava3.data.sequence... > > [javadoc] Loading source files for package org.biojava3.genome... > > [javadoc] Loading source files for package org.biojava3.genome.homology... > > [javadoc] Loading source files for package org.biojava3.genome.parsers.cytoband... > > [javadoc] Loading source files for package org.biojava3.genome.parsers.geneid... > > [javadoc] Loading source files for package org.biojava3.genome.parsers.genename... > > [javadoc] Loading source files for package org.biojava3.genome.parsers.gff... > > [javadoc] Loading source files for package org.biojava3.genome.query... > > [javadoc] Loading source files for package org.biojava3.genome.uniprot... > > [javadoc] Loading source files for package org.biojava3.genome.util... > > [javadoc] Loading source files for package org.biojava3.ontology... > > [javadoc] Loading source files for package org.biojava3.ontology.io... > > [javadoc] Loading source files for package org.biojava3.ontology.obo... > > [javadoc] Loading source files for package org.biojava3.ontology.utils... > > [javadoc] Loading source files for package org.biojava3.phylo... > > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > > [javadoc] * @author Kalle N???slund (docs) > > [javadoc] ^ > > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > > [javadoc] * @author Kalle N???slund (docs) > > [javadoc] ^ > > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > > [javadoc] * @author Kalle N???slund (docs) > > [javadoc] ^ > > [javadoc] Loading source files for package org.biojava3.protmod... > > [javadoc] Loading source files for package org.biojava3.protmod.io... > > [javadoc] Loading source files for package org.biojava3.protmod.structure... > > [javadoc] Loading source files for package org.biojava3.ronn... > > [javadoc] Loading source files for package org.biojava3.sequencing.io.fastq... > > [javadoc] Loading source files for package org.biojava3.structure... > > [javadoc] Loading source files for package org.biojava3.structure.gui... > > [javadoc] Loading source files for package org.biojava3.structure.validation... > > [javadoc] Loading source files for package org.biojava3.survival.cox... > > [javadoc] Loading source files for package org.biojava3.survival.cox.comparators... > > [javadoc] Loading source files for package org.biojava3.survival.cox.matrix... > > [javadoc] Loading source files for package org.biojava3.survival.cox.stats... > > [javadoc] Loading source files for package org.biojava3.survival.data... > > [javadoc] Loading source files for package org.biojava3.survival.kaplanmeier.figure... > > [javadoc] Loading source files for package org.biojava3.survival.kaplanmeier.metadata... > > [javadoc] Loading source files for package org.biojava3.ws.alignment... > > [javadoc] Loading source files for package org.biojava3.ws.alignment.qblast... > > [javadoc] Loading source files for package org.biojava3.ws.hmmer... > > [javadoc] Loading source files for package org.forester.analysis... > > [javadoc] Loading source files for package org.forester.application... > > [javadoc] Loading source files for package org.forester.archaeopteryx... > > [javadoc] Loading source files for package org.forester.archaeopteryx.phylogeny.data... > > [javadoc] Loading source files for package org.forester.archaeopteryx.tools... > > [javadoc] Loading source files for package org.forester.archaeopteryx.webservices... > > [javadoc] Loading source files for package org.forester.datastructures... > > [javadoc] Loading source files for package org.forester.development... > > [javadoc] Loading source files for package org.forester.evoinference... > > [javadoc] Loading source files for package org.forester.evoinference.distance... > > [javadoc] Loading source files for package org.forester.evoinference.matrix.character... > > [javadoc] Loading source files for package org.forester.evoinference.matrix.distance... > > [javadoc] Loading source files for package org.forester.evoinference.parsimony... > > [javadoc] Loading source files for package org.forester.evoinference.tools... > > [javadoc] Loading source files for package org.forester.go... > > [javadoc] Loading source files for package org.forester.go.etc... > > [javadoc] Loading source files for package org.forester.io.parsers... > > [javadoc] Loading source files for package org.forester.io.parsers.nexus... > > [javadoc] Loading source files for package org.forester.io.parsers.nhx... > > [javadoc] Loading source files for package org.forester.io.parsers.phyloxml... > > [javadoc] Loading source files for package org.forester.io.parsers.phyloxml.data... > > [javadoc] Loading source files for package org.forester.io.parsers.tol... > > [javadoc] Loading source files for package org.forester.io.parsers.util... > > [javadoc] Loading source files for package org.forester.io.writers... > > [javadoc] Loading source files for package org.forester.msa... > > [javadoc] Loading source files for package org.forester.pccx... > > [javadoc] Loading source files for package org.forester.phylogeny... > > [javadoc] Loading source files for package org.forester.phylogeny.data... > > [javadoc] Loading source files for package org.forester.phylogeny.factories... > > [javadoc] Loading source files for package org.forester.phylogeny.iterators... > > [javadoc] Loading source files for package org.forester.protein... > > [javadoc] Loading source files for package org.forester.sdi... > > [javadoc] Loading source files for package org.forester.sequence... > > [javadoc] Loading source files for package org.forester.species... > > [javadoc] Loading source files for package org.forester.surfacing... > > [javadoc] Loading source files for package org.forester.test... > > [javadoc] Loading source files for package org.forester.test.examples... > > [javadoc] Loading source files for package org.forester.tools... > > [javadoc] Loading source files for package org.forester.util... > > [javadoc] Loading source files for package org.forester.ws.hmmer... > > [javadoc] Loading source files for package org.forester.ws.seqdb... > > [javadoc] Loading source files for package org.forester.ws.uniprot... > > [javadoc] Loading source files for package org.forester.ws.wabi... > > [javadoc] 3 errors > > > > BUILD SUCCESSFUL > > Total time: 4 seconds > > rm -rf biojavadoc > > make[1]: Leaving directory '/?BUILDDIR?/biojava3-live-3.1.0+dfsg' > > jh_build > > debian/rules override_dh_auto_test > > make[1]: Entering directory '/?BUILDDIR?/biojava3-live-3.1.0+dfsg' > > cd biojava3-core && ant test > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-core/build.xml > > > > compile-test: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-core/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-core/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 17 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-core/classes > > [copy] Copying 8 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-core/classes > > [copy] Copying 140 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-core/classes > > > > test: > > [junit] Running org.biojava3.core.sequence.DNATest > > [junit] Testsuite: org.biojava3.core.sequence.DNATest > > [junit] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.353 sec > > [junit] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.353 sec > > [junit] > > [junit] Testcase: sequenceEquality took 0.013 sec > > [junit] Testcase: subSequence took 0.004 sec > > [junit] Testcase: singleCompoundSequence took 0.002 sec > > [junit] Testcase: translateToRna took 0.037 sec > > [junit] Testcase: kmerNonOverlap took 0.002 sec > > [junit] Testcase: twoBit took 0 sec > > [junit] Testcase: composition took 0.001 sec > > [junit] Testcase: fourBit took 0.004 sec > > [junit] Testcase: complement took 0.001 sec > > [junit] Testcase: kmerOverlapExceedingSequenceLength took 0.001 sec > > [junit] Testcase: at took 0 sec > > [junit] Testcase: gc took 0 sec > > [junit] Testcase: basesEqual took 0 sec > > [junit] Testcase: bogusSequence took 0 sec > > [junit] Testcase: kmerOverlap took 0 sec > > [junit] Testcase: reverseComplement took 0.001 sec > > [junit] Testcase: reverse took 0.001 sec > > [junit] Testcase: respectCase took 0 sec > > [junit] Testcase: basesEquivalent took 0 sec > > [junit] Testcase: badTwoBit took 0 sec > > [junit] Running org.biojava3.core.sequence.EditSequenceTest > > [junit] Testsuite: org.biojava3.core.sequence.EditSequenceTest > > [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec > > [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec > > [junit] > > [junit] Testcase: badSubstitute took 0.015 sec > > [junit] Testcase: delete took 0.004 sec > > [junit] Testcase: insert took 0 sec > > [junit] Testcase: substitute took 0 sec > > [junit] Running org.biojava3.core.sequence.JoiningSequenceReaderTest > > [junit] Testsuite: org.biojava3.core.sequence.JoiningSequenceReaderTest > > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 sec > > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 sec > > [junit] > > [junit] Testcase: empty took 0.014 sec > > [junit] Testcase: canScan took 0 sec > > [junit] Running org.biojava3.core.sequence.MultipleSequenceAlignmentTest > > [junit] Testsuite: org.biojava3.core.sequence.MultipleSequenceAlignmentTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec > > [junit] > > [junit] Testcase: testGetCompoundsAt took 0.017 sec > > [junit] Running org.biojava3.core.sequence.SequenceViewTest > > [junit] Testsuite: org.biojava3.core.sequence.SequenceViewTest > > [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec > > [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec > > [junit] > > [junit] Testcase: testLastIndexOf took 0.016 sec > > [junit] Testcase: testGetCompoundAt took 0 sec > > [junit] Testcase: testInverse took 0 sec > > [junit] Running org.biojava3.core.sequence.TranslationTest > > [junit] Testsuite: org.biojava3.core.sequence.TranslationTest > > [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.533 sec > > [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.533 sec > > [junit] > > [junit] Testcase: translateN took 0.045 sec > > [junit] Testcase: basicTranslation took 0.002 sec > > [junit] Testcase: translateBrca2 took 0.356 sec > > [junit] Testcase: getUniversal took 0.001 sec > > [junit] Testcase: translateInternalStops took 0.016 sec > > [junit] Testcase: multiFrameTranslation took 0.004 sec > > [junit] Testcase: translateInitMet took 0 sec > > [junit] Testcase: lowerCases took 0 sec > > [junit] Testcase: testHashCollision took 0.006 sec > > [junit] Testcase: translateBrca2ExonOne took 0 sec > > [junit] Running org.biojava3.core.sequence.compound.AmbiguityDNACompoundTest > > [junit] Testsuite: org.biojava3.core.sequence.compound.AmbiguityDNACompoundTest > > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.035 sec > > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.035 sec > > [junit] > > [junit] Testcase: testAmbiguity took 0.002 sec > > [junit] Testcase: testBasicAmbiguity took 0 sec > > [junit] Running org.biojava3.core.sequence.io.CasePreservingProteinSequenceCreatorTest > > [junit] Testsuite: org.biojava3.core.sequence.io.CasePreservingProteinSequenceCreatorTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.017 sec > > [junit] > > [junit] Testcase: testConstructor took 0.012 sec > > [junit] Running org.biojava3.core.sequence.io.FastaReaderTest > > [junit] Testsuite: org.biojava3.core.sequence.io.FastaReaderTest > > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.239 sec > > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.239 sec > > [junit] ------------- Standard Output --------------- > > [junit] process > > [junit] process(int) > > [junit] ------------- ---------------- --------------- > > [junit] > > [junit] Testcase: testProcess took 0.174 sec > > [junit] Testcase: processIntTest took 0.042 sec > > [junit] Running org.biojava3.core.sequence.io.FastaWriterTest > > [junit] Testsuite: org.biojava3.core.sequence.io.FastaWriterTest > > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec > > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec > > [junit] > > [junit] Testcase: writeBasicFasta took 0.02 sec > > [junit] Testcase: writeFastaEqualToLineLength took 0 sec > > [junit] Running org.biojava3.core.sequence.io.GenbankCookbookTest > > [junit] Testsuite: org.biojava3.core.sequence.io.GenbankCookbookTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.176 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.176 sec > > [junit] ------------- Standard Output --------------- > > [junit] AAGATGCTCCGTGGAAGGGAGCCGAGCGGTGGGCAGAGGCTGAGTCCCCGATAACGAGCGCCTCACATTTCCGTGGCATTCCCATTTGCTAGTGCGCTGCTGCGGCCGCACGCCTGATTGATATATGACTGCAATGGCACTTTTCCATTTGACATTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCCCTCTCTCTCTCCCTCTCTCTCTCTCCCTGTGTCGCTTAAACAACAGTCCTAACTTTTGTGTGTTGCAAATATAAAAGGCAAGCCATGTGACAGAGGGACAGAAGAACAAAAGCATTTGGAAGTAACAGGACCTCTTTCTAGCTCTCAGAAAAGTCTGAGAAGAAAGGAGCCCTGCGTTCCCCTAAGCTGTGCAGCAGATACTGTGATGATGGATTGCAAGTGCAAAGAGTAAGACAAAACTCCAGCACATAAAGGACAATGACAACCAGAAAGCTTCAGCCCGATCCTGCCCTTTCCTTGAACGGGACTGGATCCTAGGAGGTGAAGCCATTTCCAATTTTTTGTCCTCTGCCTCCCTCTGCTGTTCTTCTAGAGAAGTTTTTCCTTACAACAATGAGAAAACATGTACTAGCTGCATCCTTTTCTATGCTCTCCCTGCTGGTGATAATGGGAGATACAGACAGTAAAACGGACAGCTCATTCATAATGGACTCGGACCCTCGACGCTGCATGAGGCACCACTATGTGGATTCTATCAGTCACCCATTGTACAAGTGTAGCTCAAAGATGGTGCTCCTGGCCAGGTGCGAGGGGCACTGCAGCCAGGCGTCACGCTCCGAGCCTTTGGTGTCGTTCAGCACTGTCCTCAAGCAACCCTTCCGTTCCTCCTGTCACTGCTGCCGGCCCCAGACTTCCAAGCTGAAGGCACTGCGGCTGCGATGCTCAGGGGGCATGCGACTCACTGCCACCTACCGGTACATCCTCTCCTGTCACTGCGAGGAATGCAATTCCTGAGGCCCGCTGCTGTGTGTGGCTTCTGGATGGGACAACTGTAGAGGCAGTTCGACCAGCCAGGGAAAGACTGGCAAGAAAAGAGTTAAGGCAAAAAAGGATGCAACAATTCTCCCGGGACTCTGCATATTCTAGTAATAAAGACTCTACATGCTTGTTGACAGAGAGAGATACTCTGGGAACTTCTTTGCAGTTCCCATCTCCTTTCTCTGGTACAATTTCTTTTGGTTCATTTTCAGATTCAGGCATTTTCCCCCTTGGCTCTCAATGCTGTTTGGGTTTCCAACAATTCAGCATTAGTGGGAAAAAGTGGGCCCTCATACACAAGCGTGTCAGGCTGTCAGTGTTTGGTGCACGCTGGGGAAGAATTTACTTTGGAAAGTAGAAAAGCCCAGCTTTTCCTGGGACATCTTCTGTTATTGTTGATGTTTTTTTTTACCTTGTCATTTTGGTCTAAGGTTGCCATTGCTGCTAAAGGTTACCGATTTCAAAGTCCAGATACCAAGCATGTGGATATGTTTAGCTACGTTTACTCACAGCCAGCGAACTGACATTAAAATAACTAACAAACAGATTCTTTTATGTGATGCTGGAACTCTTGACAGCTATAATTATTATTCAGAAATGACTTTTTGAAAGTAAAAGCAGCATAAAGAATTTGTCACAGGAAGGCTGTCTCAGATAAATTATGGTAAAATTTTGTAAGGGAGCAGACTTTTAAAGACTTGCACAAATACGGATCCTGCACTGACTCTGGAAAAGGCATATATGTACTAGTGGCATGGAGAATGCACCATACTCATGCATGCAAATTAGACAACCAAGTATGAATCTATTTGTGGGTGTGCTATAGCTTTAGCCGTGTCACGGGCATCATTCTCTAATATCCACTTGTCCATGTGAAACATGTTGCCAAAATGGTGGCCTGGCTTGTCTTCTGAACGTTTGGTTCAAATGTGTTTTGGTCCTGGAGGCTCAAATTTTGAGTTATTCCCACGTTTTGAAATAAAAAGAGTATATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA > > [junit] MRKHVLAASFSMLSLLVIMGDTDSKTDSSFIMDSDPRRCMRHHYVDSISHPLYKCSSKMVLLARCEGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATYRYILSCHCEECNS > > [junit] {NM_000266=AAGATGCTCCGTGGAAGGGAGCCGAGCGGTGGGCAGAGGCTGAGTCCCCGATAACGAGCGCCTCACATTTCCGTGGCATTCCCATTTGCTAGTGCGCTGCTGCGGCCGCACGCCTGATTGATATATGACTGCAATGGCACTTTTCCATTTGACATTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCCCTCTCTCTCTCCCTCTCTCTCTCTCCCTGTGTCGCTTAAACAACAGTCCTAACTTTTGTGTGTTGCAAATATAAAAGGCAAGCCATGTGACAGAGGGACAGAAGAACAAAAGCATTTGGAAGTAACAGGACCTCTTTCTAGCTCTCAGAAAAGTCTGAGAAGAAAGGAGCCCTGCGTTCCCCTAAGCTGTGCAGCAGATACTGTGATGATGGATTGCAAGTGCAAAGAGTAAGACAAAACTCCAGCACATAAAGGACAATGACAACCAGAAAGCTTCAGCCCGATCCTGCCCTTTCCTTGAACGGGACTGGATCCTAGGAGGTGAAGCCATTTCCAATTTTTTGTCCTCTGCCTCCCTCTGCTGTTCTTCTAGAGAAGTTTTTCCTTACAACAATGAGAAAACATGTACTAGCTGCATCCTTTTCTATGCTCTCCCTGCTGGTGATAATGGGAGATACAGACAGTAAAACGGACAGCTCATTCATAATGGACTCGGACCCTCGACGCTGCATGAGGCACCACTATGTGGATTCTATCAGTCACCCATTGTACAAGTGTAGCTCAAAGATGGTGCTCCTGGCCAGGTGCGAGGGGCACTGCAGCCAGGCGTCACGCTCCGAGCCTTTGGTGTCGTTCAGCACTGTCCTCAAGCAACCCTTCCGTTCCTCCTGTCACTGCTGCCGGCCCCAGACTTCCAAGCTGAAGGCACTGCGGCTGCGATGCTCAGGGGGCATGCGACTCACTGCCACCTACCGGTACATCCTCTCCTGTCACTGCGAGGAATGCAATTCCTGAGGCCCGCTGCTGTGTGTGGCTTCTGGATGGGACAACTGTAGAGGCAGTTCGACCAGCCAGGGAAAGACTGGCAAGAAAAGAGTTAAGGCAAAAAAGGATGCAACAATTCTCCCGGGACTCTGCATATTCTAGTAATAAAGACTCTACATGCTTGTTGACAGAGAGAGATACTCTGGGAACTTCTTTGCAGTTCCCATCTCCTTTCTCTGGTACAATTTCTTTTGGTTCATTTTCAGATTCAGGCATTTTCCCCCTTGGCTCTCAATGCTGTTTGGGTTTCCAACAATTCAGCATTAGTGGGAAAAAGTGGGCCCTCATACACAAGCGTGTCAGGCTGTCAGTGTTTGGTGCACGCTGGGGAAGAATTTACTTTGGAAAGTAGAAAAGCCCAGCTTTTCCTGGGACATCTTCTGTTATTGTTGATGTTTTTTTTTACCTTGTCATTTTGGTCTAAGGTTGCCATTGCTGCTAAAGGTTACCGATTTCAAAGTCCAGATACCAAGCATGTGGATATGTTTAGCTACGTTTACTCACAGCCAGCGAACTGACATTAAAATAACTAACAAACAGATTCTTTTATGTGATGCTGGAACTCTTGACAGCTATAATTATTATTCAGAAATGACTTTTTGAAAGTAAAAGCAGCATAAAGAATTTGTCACAGGAAGGCTGTCTCAGATAAATTATGGTAAAATTTTGTAAGGGAGCAGACTTTTAAAGACTTGCACAAATACGGATCCTGCACTGACTCTGGAAAAGGCATATATGTACTAGTGGCATGGAGAATGCACCATACTCATGCATGCAAATTAGACAACCAAGTATGAATCTATTTGTGGGTGTGCTATAGCTTTAGCCGTGTCACGGGCATCATTCTCTAATATCCACTTGTCCATGTGAAACATGTTGCCAAAATGGTGGCCTGGCTTGTCTTCTGAACGTTTGGTTCAAATGTGTTTTGGTCCTGGAGGCTCAAATTTTGAGTTATTCCCACGTTTTGAAATAAAAAGAGTATATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA} > > [junit] {NP_000257=MRKHVLAASFSMLSLLVIMGDTDSKTDSSFIMDSDPRRCMRHHYVDSISHPLYKCSSKMVLLARCEGHCSQASRSEPLVSFSTVLKQPFRSSCHCCRPQTSKLKALRLRCSGGMRLTATYRYILSCHCEECNS} > > [junit] ------------- ---------------- --------------- > > [junit] > > [junit] Testcase: testProcess took 0.154 sec > > [junit] Running org.biojava3.core.sequence.io.GenbankReaderTest > > [junit] Testsuite: org.biojava3.core.sequence.io.GenbankReaderTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.134 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.134 sec > > [junit] ------------- Standard Output --------------- > > [junit] process protein > > [junit] process DNA > > [junit] ------------- ---------------- --------------- > > [junit] > > [junit] Testcase: testProcess took 0.112 sec > > [junit] Running org.biojava3.core.sequence.io.GenbankWriterTest > > [junit] Testsuite: org.biojava3.core.sequence.io.GenbankWriterTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.163 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.163 sec > > [junit] ------------- Standard Output --------------- > > [junit] DIVISION:UNK linear > > [junit] ------------- ---------------- --------------- > > [junit] > > [junit] Testcase: testProcess took 0.157 sec > > [junit] Running org.biojava3.core.sequence.io.GenericFastaHeaderParserTest > > [junit] Testsuite: org.biojava3.core.sequence.io.GenericFastaHeaderParserTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec > > [junit] ------------- Standard Output --------------- > > [junit] parseHeader > > [junit] ------------- ---------------- --------------- > > [junit] > > [junit] Testcase: testParseHeader took 0.013 sec > > [junit] Running org.biojava3.core.sequence.location.LocationParserTest > > [junit] Testsuite: org.biojava3.core.sequence.location.LocationParserTest > > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec > > [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec > > [junit] > > [junit] Testcase: moreComplex took 0.009 sec > > [junit] Testcase: basicLocationTests took 0.002 sec > > [junit] Running org.biojava3.core.sequence.location.LocationTest > > [junit] Testsuite: org.biojava3.core.sequence.location.LocationTest > > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 sec > > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 sec > > [junit] > > [junit] Testcase: testWithStrandSwitch took 0.02 sec > > [junit] Testcase: modulateCircular took 0.001 sec > > [junit] Testcase: testStrandFlip took 0 sec > > [junit] Testcase: testBasicCircularLocation took 0.001 sec > > [junit] Testcase: badLocations took 0.001 sec > > [junit] Testcase: completePasses took 0 sec > > [junit] Testcase: testSubLocations took 0.002 sec > > > > BUILD SUCCESSFUL > > Total time: 10 seconds > > cd biojava3-alignment && ant test > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-alignment/build.xml > > > > compile-test: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-alignment/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-alignment/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 24 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-alignment/classes > > [copy] Copying 9 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-alignment/classes > > [copy] Copying 66 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-alignment/classes > > > > test: > > [junit] Running org.biojava3.alignment.FractionalIdentityScorerTest > > [junit] Testsuite: org.biojava3.alignment.FractionalIdentityScorerTest > > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.066 sec > > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.066 sec > > [junit] > > [junit] Testcase: testGetQuery took 0.026 sec > > [junit] Testcase: testGetScore took 0.019 sec > > [junit] Testcase: testFractionalIdentityScorerPairwiseSequenceAlignerOfSC took 0 sec > > [junit] Testcase: testGetMinScore took 0 sec > > [junit] Testcase: testFractionalIdentityScorerSequencePairOfSC took 0 sec > > [junit] Testcase: testGetTarget took 0 sec > > [junit] Testcase: testGetMaxScore took 0.001 sec > > [junit] Running org.biojava3.alignment.FractionalSimilarityScorerTest > > [junit] Testsuite: org.biojava3.alignment.FractionalSimilarityScorerTest > > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 sec > > [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 sec > > [junit] > > [junit] Testcase: testGetQuery took 0.026 sec > > [junit] Testcase: testGetScore took 0.019 sec > > [junit] Testcase: testFractionalSimilarityScorerSequencePairOfSC took 0.001 sec > > [junit] Testcase: testGetMinScore took 0.001 sec > > [junit] Testcase: testFractionalSimilarityScorerPairwiseSequenceAlignerOfSC took 0 sec > > [junit] Testcase: testGetTarget took 0 sec > > [junit] Testcase: testGetMaxScore took 0.002 sec > > [junit] Running org.biojava3.alignment.GuideTreeTest > > [junit] Testsuite: org.biojava3.alignment.GuideTreeTest > > [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.134 sec > > [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.134 sec > > [junit] > > [junit] Testcase: testGuideTree took 0.078 sec > > [junit] Testcase: testToString took 0.003 sec > > [junit] Testcase: testGetScoreMatrix took 0.004 sec > > [junit] Testcase: testGetRoot took 0.018 sec > > [junit] Testcase: testGetSequences took 0.003 sec > > [junit] Testcase: testGetDistanceMatrix took 0.003 sec > > [junit] Testcase: testGetAllPairsScores took 0.004 sec > > [junit] Testcase: testIterator took 0.003 sec > > [junit] Running org.biojava3.alignment.LocalAlignmentTest > > [junit] Testsuite: org.biojava3.alignment.LocalAlignmentTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.082 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.082 sec > > [junit] > > [junit] Testcase: shouldAllowZeroLengthMatches took 0.066 sec > > [junit] Running org.biojava3.alignment.NeedlemanWunschTest > > [junit] Testsuite: org.biojava3.alignment.NeedlemanWunschTest > > [junit] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.127 sec > > [junit] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.127 sec > > [junit] > > [junit] Testcase: testGetSubstitutionMatrix took 0.025 sec > > [junit] Testcase: testGetGapPenalty took 0 sec > > [junit] Testcase: testGetComputationTime took 0.019 sec > > [junit] Testcase: should_align_middle_anchor took 0.029 sec > > [junit] Testcase: testGetQuery took 0.001 sec > > [junit] Testcase: testGetScore took 0.001 sec > > [junit] Testcase: testNeedlemanWunsch took 0.001 sec > > [junit] Testcase: should_align_all_anchored took 0.001 sec > > [junit] Testcase: testGetScoreMatrix took 0.001 sec > > [junit] Testcase: testGetPair took 0.001 sec > > [junit] Testcase: should_align_multiple_anchors took 0.001 sec > > [junit] Testcase: testAnchoredDNAAlignment took 0.003 sec > > [junit] Testcase: testGetProfile took 0.001 sec > > [junit] Testcase: testGetMinScore took 0 sec > > [junit] Testcase: should_align_ending_anchor took 0.001 sec > > [junit] Testcase: testIsStoringScoreMatrix took 0.001 sec > > [junit] Testcase: testGetScoreMatrixAsString took 0.015 sec > > [junit] Testcase: should_align_starting_anchor took 0.001 sec > > [junit] Testcase: anchors_should_not_change_score took 0 sec > > [junit] Testcase: testGetTarget took 0 sec > > [junit] Testcase: testGetMaxScore took 0.001 sec > > [junit] Running org.biojava3.alignment.SimpleAlignedSequenceTest > > [junit] Testsuite: org.biojava3.alignment.SimpleAlignedSequenceTest > > [junit] Tests run: 33, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.06 sec > > [junit] Tests run: 33, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.06 sec > > [junit] > > [junit] Testcase: testGetIndexOf took 0.012 sec > > [junit] Testcase: testGetSequenceIndexAtOutOfBounds took 0.001 sec > > [junit] Testcase: testGetSequenceIndexAtOutOfBounds2 took 0.001 sec > > [junit] Testcase: testGetSequenceIndexAtOutOfBounds3 took 0 sec > > [junit] Testcase: testGetSequenceIndexAtOutOfBounds4 took 0.001 sec > > [junit] Testcase: testGetNumGaps took 0 sec > > [junit] Testcase: testGetStart took 0 sec > > [junit] Testcase: testGetSequenceIndexAt took 0 sec > > [junit] Testcase: testGetAccession took 0 sec > > [junit] Testcase: testToString took 0.001 sec > > [junit] Testcase: testSimpleAlignedSequenceLong took 0 sec > > [junit] Testcase: testCountCompounds took 0.001 sec > > [junit] Testcase: testGetAlignmentIndexAt took 0 sec > > [junit] Testcase: testGetAlignmentIndexAtOutOfBounds took 0.001 sec > > [junit] Testcase: testGetAlignmentIndexAtOutOfBounds2 took 0 sec > > [junit] Testcase: testGetAlignmentIndexAtOutOfBounds3 took 0.001 sec > > [junit] Testcase: testGetAlignmentIndexAtOutOfBounds4 took 0 sec > > [junit] Testcase: testGetSubSequence took 0 sec > > [junit] SKIPPED > > [junit] Testcase: testGetAsList took 0.001 sec > > [junit] Testcase: testGetOriginalSequence took 0 sec > > [junit] Testcase: testGetCompoundAt took 0.001 sec > > [junit] Testcase: testGetLength took 0 sec > > [junit] Testcase: testIsCircular took 0 sec > > [junit] Testcase: testGetEnd took 0 sec > > [junit] Testcase: testSimpleAlignedSequenceLocal took 0 sec > > [junit] Testcase: testSimpleAlignedSequenceShort took 0 sec > > [junit] Testcase: testGetOverlapCount took 0 sec > > [junit] Testcase: testGetCompoundSet took 0 sec > > [junit] Testcase: testGetLocationInAlignment took 0.001 sec > > [junit] Testcase: testIterator took 0.001 sec > > [junit] Testcase: testGetSequenceAsString took 0 sec > > [junit] Testcase: testGetLastIndexOf took 0 sec > > [junit] Testcase: testGetSequenceAsStringIntegerIntegerStrand took 0.002 sec > > [junit] Running org.biojava3.alignment.SimpleGapPenaltyTest > > [junit] Testsuite: org.biojava3.alignment.SimpleGapPenaltyTest > > [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 sec > > [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 sec > > [junit] > > [junit] Testcase: testOpenPenalty took 0.003 sec > > [junit] Testcase: testType took 0 sec > > [junit] Testcase: testExtensionPenalty took 0 sec > > [junit] Testcase: testSimpleGapPenaltyShortShort took 0 sec > > [junit] Testcase: testSimpleGapPenalty took 0 sec > > [junit] Running org.biojava3.alignment.SimpleProfilePairTest > > [junit] Testsuite: org.biojava3.alignment.SimpleProfilePairTest > > [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.071 sec > > [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.071 sec > > [junit] > > [junit] Testcase: testGetQuery took 0.049 sec > > [junit] Testcase: testGetTarget took 0.001 sec > > [junit] Testcase: testSimpleProfilePair took 0.004 sec > > [junit] Running org.biojava3.alignment.SimpleProfileProfileAlignerTest > > [junit] Testsuite: org.biojava3.alignment.SimpleProfileProfileAlignerTest > > [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.145 sec > > [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.145 sec > > [junit] > > [junit] Testcase: testGetSubstitutionMatrix took 0.048 sec > > [junit] Testcase: testGetGapPenalty took 0.005 sec > > [junit] Testcase: testGetComputationTime took 0.006 sec > > [junit] Testcase: testGetQuery took 0.004 sec > > [junit] Testcase: testGetScore took 0.006 sec > > [junit] Testcase: testGetScoreMatrix took 0.004 sec > > [junit] Testcase: testGetPair took 0.005 sec > > [junit] Testcase: testGetProfile took 0.003 sec > > [junit] Testcase: testGetMinScore took 0.002 sec > > [junit] Testcase: testIsStoringScoreMatrix took 0.002 sec > > [junit] Testcase: testGetScoreMatrixAsString took 0.028 sec > > [junit] Testcase: testSimpleProfileProfileAlignerProfileOfSCProfileOfSCGapPenaltySubstitutionMatrixOfC took 0.003 sec > > [junit] Testcase: testSimpleProfileProfileAligner took 0.003 sec > > [junit] Testcase: testGetTarget took 0.002 sec > > [junit] Testcase: testGetMaxScore took 0.002 sec > > [junit] Running org.biojava3.alignment.SimpleProfileTest > > [junit] Testsuite: org.biojava3.alignment.SimpleProfileTest > > [junit] Tests run: 54, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.149 sec > > [junit] Tests run: 54, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.149 sec > > [junit] > > [junit] Testcase: testGetIndexOf took 0.032 sec > > [junit] Testcase: testGetCompoundAtSIntOutOfBounds took 0 sec > > [junit] Testcase: testGetAlignedSequenceInt took 0.001 sec > > [junit] Testcase: testToStringInt took 0.011 sec > > [junit] Testcase: testToString took 0.001 sec > > [junit] Testcase: testToStringFormatted took 0.037 sec > > [junit] Testcase: testSimpleProfile took 0 sec > > [junit] Testcase: testGetSize took 0 sec > > [junit] Testcase: testGetAlignedSequenceS took 0 sec > > [junit] Testcase: testGetAlignedSequences took 0 sec > > [junit] Testcase: testGetOriginalSequences took 0 sec > > [junit] Testcase: testGetSubProfile took 0 sec > > [junit] SKIPPED > > [junit] Testcase: testGetCompoundAtSInt took 0.001 sec > > [junit] Testcase: testGetAlignedSequencesSArray took 0.001 sec > > [junit] Testcase: testGetIndicesAt took 0.002 sec > > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds took 0 sec > > [junit] Testcase: testGetAlignedSequencesIntArray took 0.002 sec > > [junit] Testcase: testGetCompoundAtIntInt took 0.001 sec > > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds took 0 sec > > [junit] Testcase: testGetLength took 0 sec > > [junit] Testcase: testGetCompoundsAtOutOfBounds took 0 sec > > [junit] Testcase: testIsCircular took 0 sec > > [junit] Testcase: testGetCompoundsAtOutOfBounds2 took 0.001 sec > > [junit] Testcase: testGetCompoundsAtOutOfBounds3 took 0 sec > > [junit] Testcase: testGetCompoundsAtOutOfBounds4 took 0 sec > > [junit] Testcase: testGetCompoundsAtOutOfBounds5 took 0.001 sec > > [junit] Testcase: testGetCompoundsAtOutOfBounds6 took 0 sec > > [junit] Testcase: testGetIndicesAtOutOfBounds2 took 0 sec > > [junit] Testcase: testGetIndicesAtOutOfBounds3 took 0.001 sec > > [junit] Testcase: testGetIndicesAtOutOfBounds4 took 0 sec > > [junit] Testcase: testGetIndicesAtOutOfBounds5 took 0 sec > > [junit] Testcase: testGetIndicesAtOutOfBounds6 took 0.001 sec > > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds2 took 0 sec > > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds3 took 0 sec > > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds4 took 0 sec > > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds5 took 0 sec > > [junit] Testcase: testGetAlignedSequenceIntOutOfBounds6 took 0.001 sec > > [junit] Testcase: testGetCompoundSet took 0 sec > > [junit] Testcase: testGetCompoundsAt took 0 sec > > [junit] Testcase: testGetCompoundAtSIntOutOfBounds2 took 0.001 sec > > [junit] Testcase: testGetCompoundAtSIntOutOfBounds3 took 0 sec > > [junit] Testcase: testGetCompoundAtSIntOutOfBounds4 took 0 sec > > [junit] Testcase: testGetCompoundAtSIntOutOfBounds5 took 0.001 sec > > [junit] Testcase: testIterator took 0.001 sec > > [junit] Testcase: testGetLastIndexOf took 0.002 sec > > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds2 took 0 sec > > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds3 took 0 sec > > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds4 took 0 sec > > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds5 took 0 sec > > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds6 took 0 sec > > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds7 took 0 sec > > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds8 took 0 sec > > [junit] Testcase: testGetCompoundAtIntIntOutOfBounds9 took 0.001 sec > > [junit] Testcase: testGetIndicesAtOutOfBounds took 0 sec > > [junit] Running org.biojava3.alignment.SimpleSequencePairTest > > [junit] Testsuite: org.biojava3.alignment.SimpleSequencePairTest > > [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.072 sec > > [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.072 sec > > [junit] > > [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds took 0.031 sec > > [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds2 took 0 sec > > [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds3 took 0.001 sec > > [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds4 took 0 sec > > [junit] Testcase: testGetQuery took 0 sec > > [junit] Testcase: testGetIndexInTargetForQueryAtOutOfBounds took 0.001 sec > > [junit] Testcase: testGetIndexInTargetAt took 0 sec > > [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds2 took 0 sec > > [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds3 took 0.001 sec > > [junit] Testcase: testGetIndexInQueryForTargetAtOutOfBounds4 took 0 sec > > [junit] Testcase: testGetCompoundInQueryAtOutOfBounds took 0.001 sec > > [junit] Testcase: testGetIndexInQueryAtOutOfBounds took 0 sec > > [junit] Testcase: testGetCompoundInQueryAt took 0.001 sec > > [junit] Testcase: testGetIndexInQueryAtOutOfBounds2 took 0 sec > > [junit] Testcase: testGetIndexInQueryAtOutOfBounds3 took 0.001 sec > > [junit] Testcase: testGetIndexInQueryAtOutOfBounds4 took 0.001 sec > > [junit] Testcase: testGetIndexInQueryForTargetAt took 0 sec > > [junit] Testcase: testGetIndexInTargetAtOutOfBounds took 0 sec > > [junit] Testcase: testGetNumIdenticals took 0 sec > > [junit] Testcase: testGetIndexInTargetForQueryAt took 0 sec > > [junit] Testcase: testGetIndexInTargetAtOutOfBounds2 took 0 sec > > [junit] Testcase: testGetIndexInTargetAtOutOfBounds3 took 0 sec > > [junit] Testcase: testGetIndexInTargetAtOutOfBounds4 took 0 sec > > [junit] Testcase: testGetCompoundInTargetAt took 0 sec > > [junit] Testcase: testGetIndexInQueryAt took 0.001 sec > > [junit] Testcase: testGetCompoundInQueryAtOutOfBounds2 took 0 sec > > [junit] Testcase: testGetCompoundInQueryAtOutOfBounds3 took 0.001 sec > > [junit] Testcase: testGetCompoundInQueryAtOutOfBounds4 took 0 sec > > [junit] Testcase: testGetTarget took 0 sec > > [junit] Testcase: testGetCompoundInTargetAtOutOfBounds took 0 sec > > [junit] Testcase: testGetNumSimilars took 0.002 sec > > [junit] Testcase: testGetCompoundInTargetAtOutOfBounds2 took 0 sec > > [junit] Testcase: testGetCompoundInTargetAtOutOfBounds3 took 0.001 sec > > [junit] Testcase: testGetCompoundInTargetAtOutOfBounds4 took 0 sec > > [junit] Running org.biojava3.alignment.SimpleSubstitutionMatrixTest > > [junit] Testsuite: org.biojava3.alignment.SimpleSubstitutionMatrixTest > > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.07 sec > > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.07 sec > > [junit] > > [junit] Testcase: testSimpleSubstitutionMatrixNotFound took 0.006 sec > > [junit] Testcase: testSetDescription took 0.013 sec > > [junit] Testcase: testToString took 0.008 sec > > [junit] Testcase: testCaseEquivalence took 0.001 sec > > [junit] Testcase: testSimpleSubstitutionMatrix took 0.008 sec > > [junit] Testcase: testSimpleSubstitutionMatrixWrong took 0 sec > > [junit] SKIPPED > > [junit] Testcase: testSimpleSubstitutionMatrixCompoundSetOfCStringString took 0.002 sec > > [junit] Testcase: testSetName took 0.007 sec > > [junit] Testcase: testSimpleSubstitutionMatrixCompoundSetOfCShortShort took 0.003 sec > > [junit] Running org.biojava3.alignment.SmithWatermanTest > > [junit] Testsuite: org.biojava3.alignment.SmithWatermanTest > > [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.118 sec > > [junit] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.118 sec > > [junit] > > [junit] Testcase: testGetSubstitutionMatrix took 0.026 sec > > [junit] Testcase: testGetGapPenalty took 0 sec > > [junit] Testcase: testGetComputationTime took 0.018 sec > > [junit] Testcase: testGetQuery took 0.001 sec > > [junit] Testcase: testGetScore took 0.002 sec > > [junit] Testcase: testGetScoreMatrix took 0.002 sec > > [junit] Testcase: testGetPair took 0.004 sec > > [junit] Testcase: testSmithWaterman took 0.001 sec > > [junit] Testcase: testGetProfile took 0.002 sec > > [junit] Testcase: testGetMinScore took 0.001 sec > > [junit] Testcase: testIsStoringScoreMatrix took 0 sec > > [junit] Testcase: testGetScoreMatrixAsString took 0.036 sec > > [junit] Testcase: testSetStoringScoreMatrix took 0 sec > > [junit] Testcase: testGetTarget took 0 sec > > [junit] Testcase: testGetMaxScore took 0.001 sec > > [junit] Running org.biojava3.alignment.routines.AlignerHelperTest > > [junit] Testsuite: org.biojava3.alignment.routines.AlignerHelperTest > > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec > > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.026 sec > > [junit] > > [junit] Testcase: getSubproblems_should_not_allow_repeated_anchors took 0.003 sec > > [junit] Testcase: getCuts_should_return_spaced_cuts_when_query_interval_larger_than_cut_size took 0.002 sec > > [junit] Testcase: getSubproblems_should_return_score_indicies_of_alignment_subproblems took 0 sec > > [junit] Testcase: getSubproblems_should_allow_adjacent_anchors took 0 sec > > [junit] Testcase: getCuts_should_return_all_positions_when_cuts_exceeds_query_size took 0 sec > > [junit] Testcase: getSubproblems_should_allow_zero_anchors took 0 sec > > [junit] Testcase: getCuts_should_not_return_start_position_for_starting_anchor took 0 sec > > [junit] Testcase: getSubproblems_should_allow_start_and_end_anchors took 0 sec > > [junit] Testcase: getSubproblems_should_not_allow_unalignable_anchors took 0 sec > > [junit] Running org.biojava3.alignment.routines.GuanUberbacherTest > > [junit] Testsuite: org.biojava3.alignment.routines.GuanUberbacherTest > > [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 sec > > [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 sec > > [junit] > > [junit] Testcase: testGetComputationTime took 0.043 sec > > [junit] Testcase: testGuanUberbacher took 0 sec > > [junit] Testcase: testGetScore took 0.001 sec > > [junit] Testcase: testGetPair took 0.004 sec > > [junit] Testcase: testGetProfile took 0.001 sec > > [junit] Testcase: testGetMinScore took 0.001 sec > > [junit] Testcase: should_align_shorter_target took 0.025 sec > > [junit] Testcase: should_align_multiple_cuts took 0 sec > > [junit] Testcase: testGetMaxScore took 0 sec > > [junit] Testcase: should_align_shorter_query took 0.001 sec > > > > BUILD SUCCESSFUL > > Total time: 9 seconds > > cd biojava3-aa-prop && ant test > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-aa-prop/build.xml > > > > compile-test: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-aa-prop/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-aa-prop/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 9 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-aa-prop/classes > > [javac] Note: Some input files use or override a deprecated API. > > [javac] Note: Recompile with -Xlint:deprecation for details. > > [copy] Copying 12 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-aa-prop/classes > > [copy] Copying 31 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-aa-prop/classes > > > > test: > > > > BUILD SUCCESSFUL > > Total time: 2 seconds > > # Skip, missing dependency > > #cd biojava3-genome && ant test > > cd biojava3-phylo && ant test > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-phylo/build.xml > > > > compile-test: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-phylo/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-phylo/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 1 source file to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-phylo/classes > > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-phylo/src/test/resources does not exist. > > [copy] Copying 10 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-phylo/classes > > > > test: > > [junit] Running org.biojava3.phylo.AppTest > > [junit] Testsuite: org.biojava3.phylo.AppTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec > > [junit] > > [junit] Testcase: testApp took 0.001 sec > > > > BUILD SUCCESSFUL > > Total time: 2 seconds > > # Native errors may cause issue on NFS...; skipping > > #cd biojava3-sequencing && ant test > > #cd biojava3-modfinder && ant test > > cd biojava3-protein-disorder && ant test > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-protein-disorder/build.xml > > > > compile-test: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-protein-disorder/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-protein-disorder/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 3 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-protein-disorder/classes > > [copy] Copying 1 file to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-protein-disorder/classes > > [copy] Copying 14 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-protein-disorder/classes > > > > test: > > [junit] Running org.biojava3.ronn.JronnTest > > [junit] Testsuite: org.biojava3.ronn.JronnTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.032 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.032 sec > > [junit] > > [junit] Testcase: verifyRanges took 2.017 sec > > [junit] Running org.biojava3.ronn.NonstandardProteinCompoundTest > > [junit] Testsuite: org.biojava3.ronn.NonstandardProteinCompoundTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.02 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.02 sec > > [junit] > > [junit] Testcase: test took 6.002 sec > > > > BUILD SUCCESSFUL > > Total time: 10 seconds > > # Requires remote access and tmp directory write access > > #cd biojava3-structure && ant test > > cd biojava3-structure-gui && ant test > > Buildfile: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure-gui/build.xml > > > > compile-test: > > [mkdir] Created dir: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-structure-gui/classes > > [javac] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure-gui/build.xml:81: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds > > [javac] Compiling 6 source files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-structure-gui/classes > > [copy] Warning: /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojava3-structure-gui/src/test/resources does not exist. > > [copy] Copying 115 files to /?BUILDDIR?/biojava3-live-3.1.0+dfsg/buildtest/biojava3-structure-gui/classes > > > > test: > > [junit] Running org.biojava.structure.gui.JmolViewerImplTest > > [junit] Testsuite: org.biojava.structure.gui.JmolViewerImplTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec > > [junit] > > [junit] Testcase: testMe took 0.001 sec > > [junit] Running org.biojava.structure.gui.RenderStyleTest > > [junit] Testsuite: org.biojava.structure.gui.RenderStyleTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec > > [junit] > > [junit] Testcase: testSomeMethod took 0.001 sec > > [junit] Running org.biojava.structure.gui.StructureViewerTest > > [junit] Testsuite: org.biojava.structure.gui.StructureViewerTest > > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec > > [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec > > [junit] > > [junit] Testcase: testGetColor took 0.003 sec > > [junit] Testcase: testSetStructure took 0 sec > > [junit] Testcase: testClear took 0 sec > > [junit] Testcase: testGetSelection took 0.003 sec > > [junit] Testcase: testRepaint took 0 sec > > [junit] Testcase: testSetSelection took 0 sec > > [junit] Testcase: testSetZoom took 0 sec > > [junit] Testcase: testSetColor took 0.001 sec > > [junit] Testcase: testSetStyle took 0 sec > > [junit] Running org.biojava.structure.gui.ViewerTest > > [junit] Testsuite: org.biojava.structure.gui.ViewerTest > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec > > [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec > > [junit] > > [junit] Testcase: testStructureLoad took 0.001 sec > > > > BUILD SUCCESSFUL > > Total time: 3 seconds > > #No test in biojava-ws available > > #cd biojava3-ws && ant test > > make[1]: Leaving directory '/?BUILDDIR?/biojava3-live-3.1.0+dfsg' > > fakeroot debian/rules binary > > dh binary --with javahelper > > dh_testroot > > dh_prep > > dh_auto_install > > dh_install > > dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting > > make: *** [binary] Error 2 > > The full build log is available from: > http://aws-logs.debian.net/ftbfs-logs/2014/11/08/biojava3-live_3.1.0+dfsg-1_jessie.log > > A list of current common problems and possible solutions is available at > http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! > > About the archive rebuild: The rebuild was done on EC2 VM instances from > Amazon Web Services, using a clean, minimal and up-to-date chroot. Every > failed build was retried once to eliminate random failures. > > _______________________________________________ > Debian-med-packaging mailing list > Debian-med-packaging at lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > -- http://fam-tille.de From mar45_kou at yahoo.co.jp Thu Nov 13 08:05:36 2014 From: mar45_kou at yahoo.co.jp (Fatim Kassi.) Date: Thu, 13 Nov 2014 17:05:36 +0900 (JST) Subject: [Debian-med-packaging] partnership Message-ID: <471732.83016.qm@web101609.mail.kks.yahoo.co.jp> Greetings to you I have sent you this e-mail for open discussions with you. I don't want you to misunderstand this offer in any aspect...if it is okay with you, I ask for your full cooperation. I have contacted you base on trust to handle an investment in your country/company on my behalf as a prospective partner. My name is Fatim Kassi It might interest you to know that I have Euro3.600, 000.00, Three million Six Hundred thousand Euro deposited by late father with a financial institution I want your partnership for investing the fund in your country/company. It is pertinent to ask if you can handle this fund/investment in your country, give all the necessary details about the financial Institution for more information. Meanwhile, I am very honest in my dealings with people and I also demand the same from you as a Partner to be. Can I trust you with this fund? I want you to note that this is a mutual business venture as there is a reward for your assistance. I shall let you know your benefit for your assistance as we proceed. For a more comprehensive about details of the fund, please contact me as soon as possible. If you find this letter offensive, please ignore it and accept my apologies. Regards, Fatim Kassi. -------------- next part -------------- An HTML attachment was scrubbed... URL: From andreas at an3as.eu Thu Nov 13 09:07:16 2014 From: andreas at an3as.eu (Andreas Tille) Date: Thu, 13 Nov 2014 10:07:16 +0100 Subject: [Debian-med-packaging] Bug#768769: Please help: failed build of plastimatch 1.5.16+dfsg-2 for several architectures Message-ID: <20141113090716.GA27515@an3as.eu> Hi, I noticed that the proposed fix does not help to build plastimatch - at least the build fails on most architectures[1]. I have the suspicion that simply dropping --parallel from rules (== the following patch) $ diff -u rules.orig rules --- rules.orig 2014-05-19 09:39:29.000000000 +0200 +++ rules 2014-11-13 10:11:35.679855865 +0100 @@ -9,7 +9,7 @@ #export DH_VERBOSE=1 %: - dh $@ --parallel + dh $@ DEB_CMAKE_EXTRA_FLAGS += \ -DCMAKE_BUILD_TYPE:STRING=RELEASE \ could solve the issue but it can perfectly be some different problem. It would be great if somebody could investigate and upload (and file an unblock bug) since I will take the freedom to deal with real live until beginning of December. Thanks Andreas. [1] https://buildd.debian.org/status/package.php?p=plastimatch ----- Forwarded message from Debian buildds ----- Date: Wed, 12 Nov 2014 09:45:03 +0000 From: Debian buildds To: plastimatch at packages.qa.debian.org Subject: failed powerpc build of plastimatch 1.5.16+dfsg-2 * Source package: plastimatch * Version: 1.5.16+dfsg-2 * Architecture: powerpc * State: failed * Suite: sid * Builder: poulenc.debian.org * Build log: https://buildd.debian.org/fetch.cgi?pkg=plastimatch&arch=powerpc&ver=1.5.16%2Bdfsg-2&stamp=1415785114&file=log Please note that these notifications do not necessarily mean bug reports in your package but could also be caused by other packages, temporary uninstallabilities and arch-specific breakages. A look at the build log despite this disclaimer would be appreciated however. ----- End forwarded message ----- -- http://fam-tille.de From mitya57 at gmail.com Thu Nov 13 11:51:48 2014 From: mitya57 at gmail.com (Dmitry Shachnev) Date: Thu, 13 Nov 2014 15:51:48 +0400 Subject: [Debian-med-packaging] Bug#768769: Please help: failed build of plastimatch 1.5.16+dfsg-2 for several architectures In-Reply-To: <20141113090716.GA27515@an3as.eu> References: <20141113090716.GA27515@an3as.eu> Message-ID: <20141113125148.19008.11836@mitya57.me> Hi Andreas, TL;DR: insighttoolkit needs binNMU on !ppc64el. On Thu, 13 Nov 2014 10:07:16 +0100, Andreas Tille wrote: > I noticed that the proposed fix does not help to build plastimatch - at > least the build fails on most architectures[1]. The failing reason in the build log is: | CMake Error at /usr/lib/InsightToolkit/UseITK.cmake:81 (MESSAGE): | ITK was built with GDCM from "/usr/lib/gdcm-2.4", but this project is using | GDCM from "/usr/lib/arm-linux-gnueabihf/gdcm-2.4". Please set GDCM_DIR to | match the one used to build ITK. This is because GDCM recently (on 2014-09-30) switched to multi-arch location [1], and insighttoolkit (3.x) has NOT been rebuilt against that (the last insighttoolkit upload is dated 2014-03-09). [1]: http://anonscm.debian.org/viewvc/debian-med?view=revision&revision=18115 So I guess we need to binNMU insighttoolkit, and the builds will be magically fixed. The reason the build succeeded on three archs is that on amd64 and i386 plastimatch uses insighttoolkit4 (which is not affected), and on ppc64el insighttoolkit was built against new GDCM (ppc64el build was held on 2014-10-15). > I have the suspicion that simply dropping --parallel from rules > could solve the issue but it can perfectly be some different problem. No, that is unrelated and will not help. -- Dmitry Shachnev -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 819 bytes Desc: OpenPGP digital signature URL: From malat at debian.org Thu Nov 13 13:17:39 2014 From: malat at debian.org (Mathieu Malaterre) Date: Thu, 13 Nov 2014 14:17:39 +0100 Subject: [Debian-med-packaging] Bug#768769: Please help: failed build of plastimatch 1.5.16+dfsg-2 for several architectures In-Reply-To: <20141113125148.19008.11836@mitya57.me> References: <20141113090716.GA27515@an3as.eu> <20141113125148.19008.11836@mitya57.me> Message-ID: On Thu, Nov 13, 2014 at 12:51 PM, Dmitry Shachnev wrote: > Hi Andreas, > > TL;DR: insighttoolkit needs binNMU on !ppc64el. > > On Thu, 13 Nov 2014 10:07:16 +0100, Andreas Tille wrote: >> I noticed that the proposed fix does not help to build plastimatch - at >> least the build fails on most architectures[1]. > > The failing reason in the build log is: > > | CMake Error at /usr/lib/InsightToolkit/UseITK.cmake:81 (MESSAGE): > | ITK was built with GDCM from "/usr/lib/gdcm-2.4", but this project is using > | GDCM from "/usr/lib/arm-linux-gnueabihf/gdcm-2.4". Please set GDCM_DIR to > | match the one used to build ITK. > > This is because GDCM recently (on 2014-09-30) switched to multi-arch location [1], > and insighttoolkit (3.x) has NOT been rebuilt against that (the last insighttoolkit > upload is dated 2014-03-09). The diagnosis is completely correct, cmake viral dep is back: https://lists.debian.org/debian-med/2010/06/msg00016.html Steve, could you request a binNMU ? Thx From noreply at release.debian.org Thu Nov 13 16:39:14 2014 From: noreply at release.debian.org (Debian testing watch) Date: Thu, 13 Nov 2014 16:39:14 +0000 Subject: [Debian-med-packaging] r-cran-epi 1.1.67-4 MIGRATED to testing Message-ID: FYI: The status of the r-cran-epi source package in Debian's testing distribution has changed. Previous version: 1.1.67-2 Current version: 1.1.67-4 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From fabianols1 at ifsp.edu.br Fri Nov 14 01:13:56 2014 From: fabianols1 at ifsp.edu.br (XXX) Date: Fri, 14 Nov 2014 03:13:56 +0200 Subject: [Debian-med-packaging] This is a personal email directed to you for your consideration alone Message-ID: <20141114011401.7034B16498C@email.ifsp.edu.br> Hello, This is a personal email directed to you for your consideration alone, I request that it remain and be treated as such only. Please bear with me for now and do not ask my name. I am a banker with Bank Austria the biggest bank located in Austria. I have an interesting business proposal for you that will be of immense benefit to both of us. Although this may be hard for you to believe, we stand to gain 7.2 million Euros between us in a matter of days. Please grant me the benefit of doubt and hear me out. I need you to signify your interest by replying to this email. Most importantly, I will need you to promise to keep whatever you learn from me between us even if you decide not to go along with me. I will make more details available to you . That's only if you are interested ? --- This email is free from viruses and malware because avast! Antivirus protection is active. http://www.avast.com From agesilau at fsanet.com.br Fri Nov 14 07:03:01 2014 From: agesilau at fsanet.com.br (=?utf-8?Q?=C2=A92014__MasterCard=C2=AE?=) Date: Fri, 14 Nov 2014 04:03:01 -0300 (BRT) Subject: [Debian-med-packaging] =?utf-8?q?Powered_By_MasterCard=C2=AE_Inte?= =?utf-8?q?rnational?= Message-ID: <9a6350a6-3487-47e6-aac5-d2a435530924@mail.fsanet.com.br> Dear winner, You have been selected as a winner for MasterCard e-Lottery Sweepstakes promo. Find attached email with more details. Congratulations, Ajay Banga, President and Chief Executive Officer, MasterCard? International. ?2014 MasterCard? International. -------------- next part -------------- A non-text attachment was scrubbed... Name: MASTERCARD AWARD NOTIFICATION.docx Type: application/vnd.openxmlformats-officedocument.wordprocessingml.document Size: 75292 bytes Desc: not available URL: From alexandre.gramfort at m4x.org Fri Nov 14 09:38:25 2014 From: alexandre.gramfort at m4x.org (Alexandre Gramfort) Date: Fri, 14 Nov 2014 10:38:25 +0100 Subject: [Debian-med-packaging] Bug#768730: Bug#768730: [lucas@lucas-nussbaum.net: Bug#768730: python-mne: FTBFS in jessie: Tests failures] In-Reply-To: <20141111061655.GD13140@an3as.eu> References: <20141109082838.GB18517@an3as.eu> <20141110133059.GD22591@an3as.eu> <20141110175139.GC32588@onerussian.com> <20141110223059.GB13140@an3as.eu> <20141110230536.GU32588@onerussian.com> <20141111061655.GD13140@an3as.eu> Message-ID: hi, FYI here is a clean commit that should fix the problem: https://github.com/mne-tools/mne-python/commit/b9d4df78db7aaeda1feb58c18b0071934de2361e otherwise the patch attached skips the tests (quick fix). Hope this helps Alex On Tue, Nov 11, 2014 at 7:16 AM, Andreas Tille wrote: > On Mon, Nov 10, 2014 at 06:05:36PM -0500, Yaroslav Halchenko wrote: >> >> On Mon, 10 Nov 2014, Andreas Tille wrote: >> >> > On Mon, Nov 10, 2014 at 12:51:39PM -0500, Yaroslav Halchenko wrote: >> > > amount of changes from 0.8.4 to 0.8.6 seems to be miniscule and just a >> > > bug fix so we could demand unblock for this one >> >> > I'll take the bet that this will fail. I personally would not try to >> > stress test the patience of the release team. ;-) >> >> well -- the changes are indeed miniscule (if I got it right) and just a >> bugfix anyways I guess -- I bet RT can swallow this one > > To my experience over several releases it does not matter at all how > small the upstream bugfixes might be. Freeze means only RC bugs will be > fixed. Your only chance to get this through is if you file an RC bug > which is fixed by the diff between 0.8.4 to 0.8.6 - but I doubt that > this is rectified. The release team is following the rules very > strictly so I think you will loose your bet. > > BTW, I would concentrate on the question why the tests that passed > before are failing now. > > Kind regards > > Andreas. > > -- > http://fam-tille.de -------------- next part -------------- A non-text attachment was scrubbed... Name: skip_failing_tests.patch Type: application/octet-stream Size: 1284 bytes Desc: not available URL: From ftpmaster at ftp-master.debian.org Fri Nov 14 13:37:19 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 14 Nov 2014 13:37:19 +0000 Subject: [Debian-med-packaging] Processing of opencfu_3.9.0-1_amd64.changes Message-ID: opencfu_3.9.0-1_amd64.changes uploaded successfully to localhost along with the files: opencfu_3.9.0-1.dsc opencfu_3.9.0.orig.tar.gz opencfu_3.9.0-1.debian.tar.xz opencfu_3.9.0-1_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Fri Nov 14 13:48:47 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 14 Nov 2014 13:48:47 +0000 Subject: [Debian-med-packaging] opencfu_3.9.0-1_amd64.changes is NEW Message-ID: binary:opencfu is NEW. source:opencfu is NEW. Your package has been put into the NEW queue, which requires manual action from the ftpteam to process. The upload was otherwise valid (it had a good OpenPGP signature and file hashes are valid), so please be patient. Packages are routinely processed through to the archive, and do feel free to browse the NEW queue[1]. If there is an issue with the upload, you will recieve an email from a member of the ftpteam. If you have any questions, you may reply to this email. [1]: https://ftp-master.debian.org/new.html From noreply at release.debian.org Sat Nov 15 16:39:13 2014 From: noreply at release.debian.org (Debian testing watch) Date: Sat, 15 Nov 2014 16:39:13 +0000 Subject: [Debian-med-packaging] libbio-graphics-perl 2.39-2 MIGRATED to testing Message-ID: FYI: The status of the libbio-graphics-perl source package in Debian's testing distribution has changed. Previous version: 2.39-1 Current version: 2.39-2 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From ftpmaster at ftp-master.debian.org Sun Nov 16 13:00:06 2014 From: ftpmaster at ftp-master.debian.org (Thorsten Alteholz) Date: Sun, 16 Nov 2014 13:00:06 +0000 Subject: [Debian-med-packaging] opencfu_3.9.0-1_amd64.changes REJECTED Message-ID: Hi Andreas, unfortunately I have to reject your package. data/icons/scalable/opencfu.svg contains: which is missing in your debian/copyright. Also your GPL-3 should be better named GPL-3+. Thanks! Thorsten === Please feel free to respond to this email if you don't understand why your files were rejected, or if you upload new files which address our concerns. From ftpmaster at ftp-master.debian.org Sun Nov 16 16:29:48 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Sun, 16 Nov 2014 16:29:48 +0000 Subject: [Debian-med-packaging] Processing of opencfu_3.9.0-1_amd64.changes Message-ID: opencfu_3.9.0-1_amd64.changes uploaded successfully to localhost along with the files: opencfu_3.9.0-1.dsc opencfu_3.9.0.orig.tar.gz opencfu_3.9.0-1.debian.tar.xz opencfu_3.9.0-1_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Sun Nov 16 16:33:49 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Sun, 16 Nov 2014 16:33:49 +0000 Subject: [Debian-med-packaging] opencfu_3.9.0-1_amd64.changes is NEW Message-ID: binary:opencfu is NEW. source:opencfu is NEW. Your package has been put into the NEW queue, which requires manual action from the ftpteam to process. The upload was otherwise valid (it had a good OpenPGP signature and file hashes are valid), so please be patient. Packages are routinely processed through to the archive, and do feel free to browse the NEW queue[1]. If there is an issue with the upload, you will recieve an email from a member of the ftpteam. If you have any questions, you may reply to this email. [1]: https://ftp-master.debian.org/new.html From ftpmaster at ftp-master.debian.org Sun Nov 16 19:00:06 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Sun, 16 Nov 2014 19:00:06 +0000 Subject: [Debian-med-packaging] opencfu_3.9.0-1_amd64.changes ACCEPTED into unstable, unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 30 Oct 2014 12:04:49 +0100 Source: opencfu Binary: opencfu Architecture: source amd64 Version: 3.9.0-1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: opencfu - count cell colonies (CFUs) on agar plates by processing digital p Closes: 763275 Changes: opencfu (3.9.0-1) unstable; urgency=low . * Initial release. 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From maarja102221112 at hotmail.com Mon Nov 17 08:46:07 2014 From: maarja102221112 at hotmail.com (Laurie Maarja) Date: Mon, 17 Nov 2014 09:46:07 +0100 Subject: [Debian-med-packaging] Dear Beloved, Message-ID: Dear Beloved, My name is Maarja Laurie. I am addressing you this message through the work of God Almighty that made me to chose you amongst several lists of emails in order to hand these great responsibilities (?2,000,000 - Two million euros) which I am certain you will handle it carefully being the gift that came from a woman with a sincere and genuine heart towards the orphans and less privileged. It is certain that I do not know you, which I asked God Almighty to grant you the strength to handle these projects with a sincere and transparent heart. I am presently suffering greatly each day that passes by as I am not sure if I will survive, which was as a result of different surgical operations that I had. Beloved, I am afraid to die, but nobody is beyond death. Each day I keep praying to God Almighty for His help thereby directing me toward's somebody that will handle this project so that I can die peacefully. The most important help that I need from you is to always be in constant prayers with me as I am sure that you have a sincere and open heart towards the poor and orphans. I do not want to leave this world without knowing that my funds are wisely used to help the orphans and poor. I do not know how to thank you, but be sure that God Almighty will bless you for accepting to handle these projects so as to help the orphans and poor. I will be very happy to read from you so as to put you in contact with the institute where the money is presently as I am sure that you will properly make use of it. My God Almighty bless you and your entire family Well wishes, Mrs.Maarja Laurie -------------- next part -------------- An HTML attachment was scrubbed... URL: From brother at bsnet.se Mon Nov 17 09:47:44 2014 From: brother at bsnet.se (Martin Bagge) Date: Mon, 17 Nov 2014 10:47:44 +0100 Subject: [Debian-med-packaging] Bug#769879: [INTL:sv] Swedish strings for arb debconf Message-ID: <0b87d9c5f8430c9c4d9682d84b6c4c84@localhost.localdomain> package: arb severity: wishlist tags: patch l10n Please consider to add this file to translation of debconf. -- brother http://sis.bthstuden.se -------------- next part -------------- A non-text attachment was scrubbed... Name: sv.po Type: application/octet-stream Size: 1615 bytes Desc: not available URL: From anders.jonsson at norsjovallen.se Mon Nov 17 10:07:46 2014 From: anders.jonsson at norsjovallen.se (Anders Jonsson) Date: Mon, 17 Nov 2014 11:07:46 +0100 Subject: [Debian-med-packaging] Bug#769879: Some minor adjustments Message-ID: <5469C8F2.2070108@norsjovallen.se> Hi Martin, made some minor adjustments to your translation. Fixed a typo ("varhe") and replaced a few servers with "servrar". Regards, Anders Jonsson -------------- next part -------------- A non-text attachment was scrubbed... Name: sv.po Type: text/x-gettext-translation Size: 1615 bytes Desc: not available URL: From owner at bugs.debian.org Mon Nov 17 13:45:06 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Mon, 17 Nov 2014 13:45:06 +0000 Subject: [Debian-med-packaging] Processed: Re: biomaj-watcher: switch to tomcat8 References: <5469FB99.4050901@apache.org> <20141112231122.10327.849.reportbug@zam581.zam.kfa-juelich.de> Message-ID: Processing control commands: > tags -1 + patch Bug #769348 [biomaj-watcher] biomaj-watcher: switch to tomcat8 Added tag(s) patch. -- 769348: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=769348 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From ebourg at apache.org Mon Nov 17 13:43:53 2014 From: ebourg at apache.org (Emmanuel Bourg) Date: Mon, 17 Nov 2014 14:43:53 +0100 Subject: [Debian-med-packaging] Bug#769348: biomaj-watcher: switch to tomcat8 In-Reply-To: <20141112231122.10327.849.reportbug@zam581.zam.kfa-juelich.de> References: <20141112231122.10327.849.reportbug@zam581.zam.kfa-juelich.de> <20141112231122.10327.849.reportbug@zam581.zam.kfa-juelich.de> Message-ID: <5469FB99.4050901@apache.org> Control: tags -1 + patch -------------- next part -------------- Index: debian/README.Debian =================================================================== --- debian/README.Debian (revision 18328) +++ debian/README.Debian (working copy) @@ -10,4 +10,4 @@ http://gwt-google-apis.googlecode.com/svn/tags/visualization/1.1.1 - Biomaj watcher updates the access rights of most of Biomaj directories to add write access to the user tomcat6. Indeed, all configuration and bank updates will be done via the Tomcat application. Those modifications are needed only while biomaj-watcher is installed. + Biomaj watcher updates the access rights of most of Biomaj directories to add write access to the user tomcat8. Indeed, all configuration and bank updates will be done via the Tomcat application. Those modifications are needed only while biomaj-watcher is installed. Index: debian/control =================================================================== --- debian/control (revision 18328) +++ debian/control (working copy) @@ -21,7 +21,7 @@ Package: biomaj-watcher Architecture: all -Depends: ${misc:Depends}, default-jdk, tomcat6 (>=6.0.32-3), biomaj (>= 1.2.1), debconf, +Depends: ${misc:Depends}, default-jdk, tomcat8, biomaj (>= 1.2.1), debconf, liblog4j1.2-java, libjsch-java (>= 0.1.42),libjdom1-java (>= 1.1), libcommons-lang-java (>=2.4), libcommons-logging-java (>=1.1),libquartz-java(>=1.6),libxerces2-java, unzip, zip, libgnumail-java Description: biological data-bank updater - web interface Index: debian/postinst =================================================================== --- debian/postinst (revision 18328) +++ debian/postinst (working copy) @@ -48,9 +48,9 @@ rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/gnumail.jar ln -s /usr/share/java/gnumail.jar /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/gnumail.jar - #cp /usr/share/biomaj/lib/biomaj.jar /var/lib/tomcat6/shared/ - rm -f /var/lib/tomcat6/shared/biomaj.jar - cp /usr/share/biomaj/lib/biomaj.jar /var/lib/tomcat6/shared/biomaj.jar + #cp /usr/share/biomaj/lib/biomaj.jar /var/lib/tomcat8/shared/ + rm -f /var/lib/tomcat8/shared/biomaj.jar + cp /usr/share/biomaj/lib/biomaj.jar /var/lib/tomcat8/shared/biomaj.jar # Install latest definition cp /usr/share/java/webapps/biomaj-watcher/jobs.xsd /etc/biomaj-watcher/jobs.xsd @@ -62,24 +62,24 @@ # Update logs set_perms /var/log/biomaj - #chown -R tomcat6 /etc/biomaj/db_properties - chown -R tomcat6 /usr/share/java/webapps/biomaj-watcher + #chown -R tomcat8 /etc/biomaj/db_properties + chown -R tomcat8 /usr/share/java/webapps/biomaj-watcher #chmod -R 775 /etc/biomaj/db_properties - #chown -R tomcat6 /var/log/biomaj + #chown -R tomcat8 /var/log/biomaj #chmod -R 775 /var/log/biomaj - #chown -R tomcat6 /var/lib/biomaj + #chown -R tomcat8 /var/lib/biomaj #chmod -R 775 /var/lib/biomaj - chown -R tomcat6 /etc/biomaj-watcher + chown -R tomcat8 /etc/biomaj-watcher # Update context java -cp $biomajwatcher_root/bin UpdateToBiomaj1_2 /usr/share/java/webapps/biomaj-watcher admin - chown -R tomcat6 /etc/biomaj-watcher - #cp /etc/biomaj-watcher/BmajWatcher*.xml /var/lib/tomcat6/conf/Catalina/localhost/ - rm -f /etc/tomcat6/Catalina/localhost/BmajWatcher.xml - rm -f /etc/tomcat6/Catalina/localhost/BmajWatcher#logs.xml - ln -s /etc/biomaj-watcher/BmajWatcher.xml /etc/tomcat6/Catalina/localhost/BmajWatcher.xml - ln -s /etc/biomaj-watcher/BmajWatcher#logs.xml /etc/tomcat6/Catalina/localhost/BmajWatcher#logs.xml + chown -R tomcat8 /etc/biomaj-watcher + #cp /etc/biomaj-watcher/BmajWatcher*.xml /var/lib/tomcat8/conf/Catalina/localhost/ + rm -f /etc/tomcat8/Catalina/localhost/BmajWatcher.xml + rm -f /etc/tomcat8/Catalina/localhost/BmajWatcher#logs.xml + ln -s /etc/biomaj-watcher/BmajWatcher.xml /etc/tomcat8/Catalina/localhost/BmajWatcher.xml + ln -s /etc/biomaj-watcher/BmajWatcher#logs.xml /etc/tomcat8/Catalina/localhost/BmajWatcher#logs.xml - invoke-rc.d tomcat6 restart + invoke-rc.d tomcat8 restart ;; Index: debian/postrm =================================================================== --- debian/postrm (revision 18328) +++ debian/postrm (working copy) @@ -14,20 +14,20 @@ ;; remove|failed-upgrade|abort-install|abort-upgrade|disappear) - if [ -e /var/lib/tomcat6/shared/biomaj.jar ]; then - rm /var/lib/tomcat6/shared/biomaj.jar + if [ -e /var/lib/tomcat8/shared/biomaj.jar ]; then + rm /var/lib/tomcat8/shared/biomaj.jar fi - rm -f /etc/tomcat6/Catalina/localhost/BmajWatcher.xml - rm -f /etc/tomcat6/Catalina/localhost/BmajWatcher#logs.xml + rm -f /etc/tomcat8/Catalina/localhost/BmajWatcher.xml + rm -f /etc/tomcat8/Catalina/localhost/BmajWatcher#logs.xml rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/*.jar ;; purge) - if [ -e /var/lib/tomcat6/shared/biomaj.jar ]; then - rm /var/lib/tomcat6/shared/biomaj.jar + if [ -e /var/lib/tomcat8/shared/biomaj.jar ]; then + rm /var/lib/tomcat8/shared/biomaj.jar fi - rm -f /etc/tomcat6/Catalina/localhost/BmajWatcher.xml - rm -f /etc/tomcat6/Catalina/localhost/BmajWatcher#logs.xml + rm -f /etc/tomcat8/Catalina/localhost/BmajWatcher.xml + rm -f /etc/tomcat8/Catalina/localhost/BmajWatcher#logs.xml rm -f /usr/share/java/webapps/biomaj-watcher/WEB-INF/lib/*.jar rm -rf /etc/biomaj-watcher Index: debian/setperms.sh =================================================================== --- debian/setperms.sh (revision 18328) +++ debian/setperms.sh (working copy) @@ -2,8 +2,8 @@ if ! dpkg-statoverride --list "$1" >/dev/null; then if [ "$1" == "/etc/biomaj/db_properties/global.properties" ]; then - dpkg-statoverride --update --add tomcat6 root 0660 $1 + dpkg-statoverride --update --add tomcat8 root 0660 $1 else - dpkg-statoverride --update --add tomcat6 root 0775 $1 + dpkg-statoverride --update --add tomcat8 root 0775 $1 fi fi From cdkrot at yandex.ru Mon Nov 17 17:37:03 2014 From: cdkrot at yandex.ru (Sayutin Dmitry) Date: Mon, 17 Nov 2014 21:37:03 +0400 Subject: [Debian-med-packaging] Bug#769934: bowtie2: man for bowtie2-build Message-ID: <20141117183703.8108.65685.reportbug@cds-d> Package: bowtie2 Version: 2.2.4-1 Severity: normal Hello, $ man bowtie2-build shows almost empty man page, and "/usr/bin/env: python: No such file or directory" under description section. It is probably documentation generation bug due to python setup. $ man bowtie2 works ok. -- System Information: Debian Release: jessie/sid APT prefers testing-updates APT policy: (500, 'testing-updates'), (500, 'testing') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 3.16-3-amd64 (SMP w/4 CPU cores) Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash Versions of packages bowtie2 depends on: ii libc6 2.19-13 ii libgcc1 1:4.9.1-19 ii libstdc++6 4.9.1-19 ii python 2.7.8-2 bowtie2 recommends no packages. Versions of packages bowtie2 suggests: pn bowtie2-examples -- no debconf information From owner at bugs.debian.org Mon Nov 17 20:15:06 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Mon, 17 Nov 2014 20:15:06 +0000 Subject: [Debian-med-packaging] Processed: Re: Bug#768710: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting References: <20141117201230.GA19238@jadzia.comodo.priv.at> <20141109070704.GA16900@xanadu.blop.info> Message-ID: Processing control commands: > tag -1 + confirmed patch Bug #768710 [src:biojava3-live] biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting Added tag(s) confirmed and patch. -- 768710: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=768710 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From gregoa at debian.org Mon Nov 17 20:12:30 2014 From: gregoa at debian.org (gregor herrmann) Date: Mon, 17 Nov 2014 21:12:30 +0100 Subject: [Debian-med-packaging] Bug#768710: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting In-Reply-To: <20141109070704.GA16900@xanadu.blop.info> References: <20141109070704.GA16900@xanadu.blop.info> Message-ID: <20141117201230.GA19238@jadzia.comodo.priv.at> Control: tag -1 + confirmed patch On Sun, 09 Nov 2014 08:07:04 +0100, Lucas Nussbaum wrote: > Source: biojava3-live > Version: 3.1.0+dfsg-1 > Severity: serious > Tags: jessie sid > User: debian-qa at lists.debian.org > Usertags: qa-ftbfs-20141108 qa-ftbfs > Justification: FTBFS in jessie on amd64 > > javadocs: > > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > > [javadoc] * @author Kalle N???slund (docs) > > [javadoc] ^ > > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > > [javadoc] * @author Kalle N???slund (docs) > > [javadoc] ^ > > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > > [javadoc] * @author Kalle N???slund (docs) > > [javadoc] ^ The package doesn't build in my sid chroot (because of some rdep glitch [0]) but I've tested the attached patch in a jessie chroot. (There are other ways to tell javadoc about the file encodings but that was my first try and it works.) Cheers, gregor [0] Errors were encountered while processing: icedtea-netx:amd64 E: Sub-process /usr/bin/dpkg returned an error code (1) Failed to perform requested operation on package. Trying to recover: Setting up icedtea-netx:amd64 (1.5.1-1) ... update-alternatives: warning: forcing reinstallation of alternative /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings because link group itweb-settings is broken update-alternatives: warning: not replacing /usr/share/man/man1/itweb-settings.1.gz with a link update-alternatives: warning: forcing reinstallation of alternative /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings because link group itweb-settings is broken update-alternatives: warning: not replacing /usr/share/man/man1/itweb-settings.1.gz with a link update-alternatives: error: alternative path /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/javaws doesn't exist dpkg: error processing package icedtea-netx:amd64 (--configure): subprocess installed post-installation script returned error exit status 2 Errors were encountered while processing: icedtea-netx:amd64 -- .''`. Homepage: http://info.comodo.priv.at/ - OpenPGP key 0xBB3A68018649AA06 : :' : Debian GNU/Linux user, admin, and developer - http://www.debian.org/ `. `' Member of VIBE!AT & SPI, fellow of the Free Software Foundation Europe `- NP: The Beatles: Good Morning Good Morning -------------- next part -------------- A non-text attachment was scrubbed... Name: 768710.diff Type: text/x-diff Size: 1270 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 949 bytes Desc: Digital Signature URL: From tille at debian.org Tue Nov 18 05:56:50 2014 From: tille at debian.org (Andreas Tille) Date: Tue, 18 Nov 2014 06:56:50 +0100 Subject: [Debian-med-packaging] Bug#768710: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting In-Reply-To: <20141117201230.GA19238@jadzia.comodo.priv.at> References: <20141109070704.GA16900@xanadu.blop.info> <20141117201230.GA19238@jadzia.comodo.priv.at> Message-ID: <20141118055650.GA10675@an3as.eu> Hi Gregor, I'm in (semi)-Vac since the weekend and will go on VAC tomorrow. Feel free to NMU (or "team" upload). It seems Olivier who is usually very responsive has some time constraints. Thanks for your help Andreas. On Mon, Nov 17, 2014 at 09:12:30PM +0100, gregor herrmann wrote: > Control: tag -1 + confirmed patch > > On Sun, 09 Nov 2014 08:07:04 +0100, Lucas Nussbaum wrote: > > > Source: biojava3-live > > Version: 3.1.0+dfsg-1 > > Severity: serious > > Tags: jessie sid > > User: debian-qa at lists.debian.org > > Usertags: qa-ftbfs-20141108 qa-ftbfs > > Justification: FTBFS in jessie on amd64 > > > > > javadocs: > > > > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > > > [javadoc] * @author Kalle N???slund (docs) > > > [javadoc] ^ > > > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > > > [javadoc] * @author Kalle N???slund (docs) > > > [javadoc] ^ > > > [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII > > > [javadoc] * @author Kalle N???slund (docs) > > > [javadoc] ^ > > The package doesn't build in my sid chroot (because of some rdep > glitch [0]) but I've tested the attached patch in a jessie chroot. > > (There are other ways to tell javadoc about the file encodings but > that was my first try and it works.) > > > > Cheers, > gregor > > > [0] > Errors were encountered while processing: > icedtea-netx:amd64 > E: Sub-process /usr/bin/dpkg returned an error code (1) > Failed to perform requested operation on package. Trying to recover: > Setting up icedtea-netx:amd64 (1.5.1-1) ... > update-alternatives: warning: forcing reinstallation of alternative /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings because link group itweb-settings is broken > update-alternatives: warning: not replacing /usr/share/man/man1/itweb-settings.1.gz with a link > update-alternatives: warning: forcing reinstallation of alternative /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings because link group itweb-settings is broken > update-alternatives: warning: not replacing /usr/share/man/man1/itweb-settings.1.gz with a link > update-alternatives: error: alternative path /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/javaws doesn't exist > dpkg: error processing package icedtea-netx:amd64 (--configure): > subprocess installed post-installation script returned error exit status 2 > Errors were encountered while processing: > icedtea-netx:amd64 > > -- > .''`. Homepage: http://info.comodo.priv.at/ - OpenPGP key 0xBB3A68018649AA06 > : :' : Debian GNU/Linux user, admin, and developer - http://www.debian.org/ > `. `' Member of VIBE!AT & SPI, fellow of the Free Software Foundation Europe > `- NP: The Beatles: Good Morning Good Morning > Index: debian/build.xml > =================================================================== > --- debian/build.xml (revision 18487) > +++ debian/build.xml (working copy) > @@ -61,7 +61,7 @@ > > > > - > + > > > > Index: debian/changelog > =================================================================== > --- debian/changelog (revision 18487) > +++ debian/changelog (working copy) > @@ -1,3 +1,14 @@ > +biojava3-live (3.1.0+dfsg-1.1) UNRELEASED; urgency=medium > + > + * Non-maintainer upload. > + * Fix "FTBFS in jessie: dh_install: libbiojava3-java-doc missing files > + (doc/biojava/*), aborting": > + debian/build.xml: tell javadoc that source files are encoded as UTF-8; > + otherwise it bails out, and dh_install finds nothing to install. > + (Closes: #768710) > + > + -- gregor herrmann Mon, 17 Nov 2014 20:36:16 +0100 > + > biojava3-live (3.1.0+dfsg-1) unstable; urgency=medium > > * New upstream release > _______________________________________________ > Debian-med-packaging mailing list > Debian-med-packaging at lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de From zumbi at debian.org Mon Nov 17 23:45:02 2014 From: zumbi at debian.org (Hector Oron) Date: Tue, 18 Nov 2014 00:45:02 +0100 Subject: [Debian-med-packaging] Bug#769975: pastimatch: FTBFS on several arches Message-ID: <20141117234502.4518.50357.reportbug@polynomio.collabora.co.uk> Source: pastimatch Version: 1.5.16+dfsg-2 Severity: serious Justification: FTBFS Hello, Your package fails to build from source on Debian autobuilder network. Please check your package build logs at: Best regards -- System Information: Debian Release: jessie/sid APT prefers unstable APT policy: (900, 'unstable') Architecture: i386 (i686) Kernel: Linux 3.14-2-686-pae (SMP w/4 CPU cores) Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash From owner at bugs.debian.org Tue Nov 18 10:51:17 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Tue, 18 Nov 2014 10:51:17 +0000 Subject: [Debian-med-packaging] Processed: reassign 769975 to src:plastimatch References: <1416307819-1138-bts-andreimpopescu@gmail.com> Message-ID: Processing commands for control at bugs.debian.org: > reassign 769975 src:plastimatch 1.5.16+dfsg-2 Bug #769975 [src:pastimatch] pastimatch: FTBFS on several arches Warning: Unknown package 'src:pastimatch' Bug reassigned from package 'src:pastimatch' to 'src:plastimatch'. No longer marked as found in versions pastimatch/1.5.16+dfsg-2. Ignoring request to alter fixed versions of bug #769975 to the same values previously set Bug #769975 [src:plastimatch] pastimatch: FTBFS on several arches Marked as found in versions plastimatch/1.5.16+dfsg-2. > thanks Stopping processing here. Please contact me if you need assistance. -- 769975: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=769975 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From olivier.sallou at irisa.fr Tue Nov 18 13:09:25 2014 From: olivier.sallou at irisa.fr (Olivier Sallou) Date: Tue, 18 Nov 2014 14:09:25 +0100 Subject: [Debian-med-packaging] Bug#768710: Bug#768710: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting In-Reply-To: <20141118055650.GA10675@an3as.eu> References: <20141109070704.GA16900@xanadu.blop.info> <20141117201230.GA19238@jadzia.comodo.priv.at> <20141118055650.GA10675@an3as.eu> Message-ID: <546B4505.5020605@irisa.fr> On 11/18/2014 06:56 AM, Andreas Tille wrote: > Hi Gregor, > > I'm in (semi)-Vac since the weekend and will go on VAC tomorrow. Feel > free to NMU (or "team" upload). It seems Olivier who is usually very > responsive has some time constraints. Hi, I gonna add the patch and upload the fix today. Thanks for your help Olivier > > Thanks for your help > > Andreas. > > On Mon, Nov 17, 2014 at 09:12:30PM +0100, gregor herrmann wrote: >> Control: tag -1 + confirmed patch >> >> On Sun, 09 Nov 2014 08:07:04 +0100, Lucas Nussbaum wrote: >> >>> Source: biojava3-live >>> Version: 3.1.0+dfsg-1 >>> Severity: serious >>> Tags: jessie sid >>> User: debian-qa at lists.debian.org >>> Usertags: qa-ftbfs-20141108 qa-ftbfs >>> Justification: FTBFS in jessie on amd64 >> >>>> javadocs: >>>> [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII >>>> [javadoc] * @author Kalle N???slund (docs) >>>> [javadoc] ^ >>>> [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII >>>> [javadoc] * @author Kalle N???slund (docs) >>>> [javadoc] ^ >>>> [javadoc] /?BUILDDIR?/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: error: unmappable character for encoding ASCII >>>> [javadoc] * @author Kalle N???slund (docs) >>>> [javadoc] ^ >> The package doesn't build in my sid chroot (because of some rdep >> glitch [0]) but I've tested the attached patch in a jessie chroot. >> >> (There are other ways to tell javadoc about the file encodings but >> that was my first try and it works.) >> >> >> >> Cheers, >> gregor >> >> >> [0] >> Errors were encountered while processing: >> icedtea-netx:amd64 >> E: Sub-process /usr/bin/dpkg returned an error code (1) >> Failed to perform requested operation on package. Trying to recover: >> Setting up icedtea-netx:amd64 (1.5.1-1) ... >> update-alternatives: warning: forcing reinstallation of alternative /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings because link group itweb-settings is broken >> update-alternatives: warning: not replacing /usr/share/man/man1/itweb-settings.1.gz with a link >> update-alternatives: warning: forcing reinstallation of alternative /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings because link group itweb-settings is broken >> update-alternatives: warning: not replacing /usr/share/man/man1/itweb-settings.1.gz with a link >> update-alternatives: error: alternative path /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/javaws doesn't exist >> dpkg: error processing package icedtea-netx:amd64 (--configure): >> subprocess installed post-installation script returned error exit status 2 >> Errors were encountered while processing: >> icedtea-netx:amd64 >> >> -- >> .''`. Homepage: http://info.comodo.priv.at/ - OpenPGP key 0xBB3A68018649AA06 >> : :' : Debian GNU/Linux user, admin, and developer - http://www.debian.org/ >> `. `' Member of VIBE!AT & SPI, fellow of the Free Software Foundation Europe >> `- NP: The Beatles: Good Morning Good Morning >> Index: debian/build.xml >> =================================================================== >> --- debian/build.xml (revision 18487) >> +++ debian/build.xml (working copy) >> @@ -61,7 +61,7 @@ >> >> >> >> - >> + >> >> >> >> Index: debian/changelog >> =================================================================== >> --- debian/changelog (revision 18487) >> +++ debian/changelog (working copy) >> @@ -1,3 +1,14 @@ >> +biojava3-live (3.1.0+dfsg-1.1) UNRELEASED; urgency=medium >> + >> + * Non-maintainer upload. >> + * Fix "FTBFS in jessie: dh_install: libbiojava3-java-doc missing files >> + (doc/biojava/*), aborting": >> + debian/build.xml: tell javadoc that source files are encoded as UTF-8; >> + otherwise it bails out, and dh_install finds nothing to install. >> + (Closes: #768710) >> + >> + -- gregor herrmann Mon, 17 Nov 2014 20:36:16 +0100 >> + >> biojava3-live (3.1.0+dfsg-1) unstable; urgency=medium >> >> * New upstream release > > > >> _______________________________________________ >> Debian-med-packaging mailing list >> Debian-med-packaging at lists.alioth.debian.org >> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 From edmund.grimley.evans at gmail.com Tue Nov 18 14:55:53 2014 From: edmund.grimley.evans at gmail.com (Edmund Grimley Evans) Date: Tue, 18 Nov 2014 14:55:53 +0000 Subject: [Debian-med-packaging] Bug#770041: uc-echo: FTBFS on arm64 Message-ID: Source: uc-echo Version: 1.12-7 It failed to build on arm64: http://buildd.debian.org/status/package.php?p=uc-echo&suite=sid The error was: g++ -c -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -m64 -Wall -O3 -D_FORTIFY_SOURCE=2 DNASeq.cpp -o DNASeq.o g++: error: unrecognized command line option '-m64' In debian/rules there's a big long list of Debian architectures that don't need "-m64". You can add "arm64" to that list, though you might want to think about listing the architectures that do need it instead. From gregoa at debian.org Tue Nov 18 16:41:28 2014 From: gregoa at debian.org (gregor herrmann) Date: Tue, 18 Nov 2014 17:41:28 +0100 Subject: [Debian-med-packaging] Bug#768710: Bug#768710: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting In-Reply-To: <546B4505.5020605@irisa.fr> References: <20141109070704.GA16900@xanadu.blop.info> <20141117201230.GA19238@jadzia.comodo.priv.at> <20141118055650.GA10675@an3as.eu> <546B4505.5020605@irisa.fr> Message-ID: <20141118164128.GD7743@jadzia.comodo.priv.at> On Tue, 18 Nov 2014 14:09:25 +0100, Olivier Sallou wrote: > On 11/18/2014 06:56 AM, Andreas Tille wrote: > > I'm in (semi)-Vac since the weekend and will go on VAC tomorrow. Feel > > free to NMU (or "team" upload). It seems Olivier who is usually very > > responsive has some time constraints. > Hi, > I gonna add the patch and upload the fix today. Excellent, thank you. Cheers, gregor -- .''`. Homepage: http://info.comodo.priv.at/ - OpenPGP key 0xBB3A68018649AA06 : :' : Debian GNU/Linux user, admin, and developer - http://www.debian.org/ `. `' Member of VIBE!AT & SPI, fellow of the Free Software Foundation Europe `- NP: Kurt Ostbahn & Kombo: In dera Bar -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 949 bytes Desc: Digital Signature URL: From edmund.grimley.evans at gmail.com Tue Nov 18 18:19:29 2014 From: edmund.grimley.evans at gmail.com (Edmund Grimley Evans) Date: Tue, 18 Nov 2014 18:19:29 +0000 Subject: [Debian-med-packaging] Bug#770079: ltrsift: FTBFS on arm64 Message-ID: Source: ltrsift Version: 1.0.2-1 It failed to build on arm64: http://buildd.debian.org/status/package.php?p=ltrsift&suite=sid The error was: [compile obj/src/preprocess_visitor.o] cc: error: unrecognized command line option '-m64' cc: error: unrecognized command line option '-m64' make[2]: *** [obj/src/script_filter_stream.o] Error 1 The relevant logic in the Makefile looks like this: # system specific stuff (concerning 64bit compilation) MACHINE:=$(shell uname -m) ifeq ($(64bit),yes) ifneq ($(MACHINE),x86_64) m64=yes endif BIT:=64bit else ifeq ($(MACHINE),x86_64) m32=yes endif BIT:=32bit endif The option "64bit" is being set to "yes" by some logic in debian/rules. The right fix for upstream would probably be to replace ifneq ($(MACHINE),x86_64) with something like: ifneq ($(filter $(MACHINE), i386 i486 i586 i686 x86 ),) That would perhaps allow them to build a 64-bit binary on a 32-bit Intel machine by specifying "64bit=yes" as an argument to "make". To fix this for Debian you could probably just delete the stuff in debian/rules that sets "64bit". Typically you're using a compiler that has the right default anyway, even when you're cross-compiling, and BIT is only used for setting GTDISTBASENAME, which is only used by upstream, I would guess. From ftpmaster at ftp-master.debian.org Tue Nov 18 19:47:27 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 18 Nov 2014 19:47:27 +0000 Subject: [Debian-med-packaging] Processing of ltrsift_1.0.2-2_amd64.changes Message-ID: ltrsift_1.0.2-2_amd64.changes uploaded successfully to localhost along with the files: ltrsift_1.0.2-2.dsc ltrsift_1.0.2-2.debian.tar.xz ltrsift_1.0.2-2_amd64.deb ltrsift-dbg_1.0.2-2_amd64.deb ltrsift-examples_1.0.2-2_all.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Tue Nov 18 19:49:12 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 18 Nov 2014 19:49:12 +0000 Subject: [Debian-med-packaging] ltrsift_1.0.2-2_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 18 Nov 2014 19:36:18 +0000 Source: ltrsift Binary: ltrsift ltrsift-dbg ltrsift-examples Architecture: source amd64 all Version: 1.0.2-2 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: ltrsift - postprocessing and classification of LTR retrotransposons ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d ltrsift-examples - example data for LTRsift Changes: ltrsift (1.0.2-2) unstable; urgency=low . * fix FTBFS on 64bit archs * lintian cleanups Checksums-Sha1: e23bcff16c7fd3e14055219b57858d6cc98a7825 2132 ltrsift_1.0.2-2.dsc f5cb4abdc03d5d877a0fdb3b6317de71195db8c9 10424 ltrsift_1.0.2-2.debian.tar.xz cf5eff0b1ddafad098354655c0ffc94fd3937cc1 103374 ltrsift_1.0.2-2_amd64.deb 94c2ec3c101da998399653875d4376f2df6e6635 292822 ltrsift-dbg_1.0.2-2_amd64.deb 1bddc3f7c0e91b4d380a9bf91d19bc7799e1ede3 7192756 ltrsift-examples_1.0.2-2_all.deb Checksums-Sha256: 0ba6ee9e22198c37148db5163c6fc4554647dbb1775448a416603e5c454fc2af 2132 ltrsift_1.0.2-2.dsc fbb7c094f1f70065f2d5186058b4fc1e47e62fd1991e40d64e1d25a913416064 10424 ltrsift_1.0.2-2.debian.tar.xz c176c06d95b7429c12a16713aa440805f8a19ea3ad948b3cf017383c8b004e1e 103374 ltrsift_1.0.2-2_amd64.deb 4a67cba7d86d38b2bab9586dbbce92c1f6cb55b2f10f72921f70624d0448b14b 292822 ltrsift-dbg_1.0.2-2_amd64.deb 64e30b0a1aba9eb79af0999b8e928d3ca5c45728ab8b6811d043dc5b9c26fe40 7192756 ltrsift-examples_1.0.2-2_all.deb Files: da6113295e2b38c9f00ccb1f859b6a56 2132 science optional ltrsift_1.0.2-2.dsc 8a73eeb9401676f97f42905fa7d9cb70 10424 science optional ltrsift_1.0.2-2.debian.tar.xz 76819ac9d4bd58ad7ebb36bcea9ad97d 103374 science optional ltrsift_1.0.2-2_amd64.deb 20612d8484ad0282c5f2f08b95bdc43b 292822 debug extra ltrsift-dbg_1.0.2-2_amd64.deb 168761bbc95cfba70a94908f761e48d2 7192756 science optional ltrsift-examples_1.0.2-2_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJUa6FXAAoJEFVWo04Eo2EL2fYQALqgjDUhg6RWPJaDscCv2EiJ v5o92OEK3Pptwaob4Z+qptIX6Uud782Z5Z7pfxm9ZWnVe7FuvLQy8aE3BLPYbFa2 IKP5CWW2GkTNJAP+dpnWnJnykb+y8lnVOAkYTcPlvkEcCf0JX90vu34/xlbWTeNH 9lZhrCOb0FjjdyXsoVWSOfQvVDA4rtkrIT9puKNOfXQSS5g50E2yepvyaTjfstLN B24+Gu076wZezOQbr/6SNDcZA1MRcFVHfHIFGfJMjnRJNqQS3EcOd+O45jojPSto 9d4TIgsIVe/WhePA8tMnrnjbv9QkWuXMnmUS1rV4oz/NW2gJDWC2MR2MZ5GDavvs mZssEBGNpcdmD3YZ5GmN3EZBSvuDmhcmMT67kS8aM+Cb0wNuef3+YegKhjKKE/y3 yggBKvdqY13hh5Y6iE9l4gpOVz4vzwR0w/TV1dqdT5r9WfaNlCg3KS+XfSq1oKnJ JNe0DZFsP8z+CzATyB2qArdf/PJKzPYPeRFk+QnwfWKrU/L4/Flo4Ed7UPUqS/BC QnBmaAN5YANCCCMzsQ4Yj3MMMr/2iGKtYLvKnlNkq+hD1tBGkhzdSLFZcEPJKQ3f H39Ch3+CFo8JAJwEQxJ4FC7wfqhbB/cP2OfbyHBkyFWJfSALqd8PK/gghAY9Z3Ky TG1GK1VxrpFtQ6LCiUKZ =Yhdl -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From ftpmaster at ftp-master.debian.org Tue Nov 18 19:52:28 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 18 Nov 2014 19:52:28 +0000 Subject: [Debian-med-packaging] Processing of biojava3-live_3.1.0+dfsg-2_amd64.changes Message-ID: biojava3-live_3.1.0+dfsg-2_amd64.changes uploaded successfully to localhost along with the files: biojava3-live_3.1.0+dfsg-2.dsc biojava3-live_3.1.0+dfsg-2.debian.tar.xz libbiojava3.0-java_3.1.0+dfsg-2_all.deb libbiojava3-java_3.1.0+dfsg-2_all.deb libbiojava3-java-doc_3.1.0+dfsg-2_all.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Tue Nov 18 20:17:39 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 18 Nov 2014 20:17:39 +0000 Subject: [Debian-med-packaging] Processing of ltrsift_1.0.2-3_amd64.changes Message-ID: ltrsift_1.0.2-3_amd64.changes uploaded successfully to localhost along with the files: ltrsift_1.0.2-3.dsc ltrsift_1.0.2-3.debian.tar.xz ltrsift_1.0.2-3_amd64.deb ltrsift-dbg_1.0.2-3_amd64.deb ltrsift-examples_1.0.2-3_all.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From olivier.sallou at gmail.com Tue Nov 18 21:10:26 2014 From: olivier.sallou at gmail.com (olivier sallou) Date: Tue, 18 Nov 2014 21:10:26 +0000 Subject: [Debian-med-packaging] Fwd: Bug#770096: Acknowledgement (unblock: biojava3-live/3.1.0+dfsg-2) References: Message-ID: ---------- Forwarded message --------- From: Debian Bug Tracking System Date: Tue Nov 18 2014 at 22:09:17 Subject: Bug#770096: Acknowledgement (unblock: biojava3-live/3.1.0+dfsg-2) To: olivier sallou Thank you for filing a new Bug report with Debian. This is an automatically generated reply to let you know your message has been received. Your message is being forwarded to the package maintainers and other interested parties for their attention; they will reply in due course. Your message has been sent to the package maintainer(s): Debian Release Team If you wish to submit further information on this problem, please send it to 770096 at bugs.debian.org. Please do not send mail to owner at bugs.debian.org unless you wish to report a problem with the Bug-tracking system. -- 770096: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=770096 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An HTML attachment was scrubbed... URL: From ftpmaster at ftp-master.debian.org Tue Nov 18 21:19:25 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 18 Nov 2014 21:19:25 +0000 Subject: [Debian-med-packaging] biojava3-live_3.1.0+dfsg-2_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 18 Nov 2014 14:06:30 +0100 Source: biojava3-live Binary: libbiojava3.0-java libbiojava3-java libbiojava3-java-doc Architecture: source all Version: 3.1.0+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Olivier Sallou Description: libbiojava3-java - Java API to biological data and applications (default version) libbiojava3-java-doc - [Biology] Documentation for BioJava libbiojava3.0-java - Java API to biological data and applications (version 3) Closes: 768710 Changes: biojava3-live (3.1.0+dfsg-2) unstable; urgency=medium . * Fix "FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting": debian/build.xml: tell javadoc that source files are encoded as UTF-8; otherwise it bails out, and dh_install finds nothing to install. 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From owner at bugs.debian.org Tue Nov 18 21:21:14 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Tue, 18 Nov 2014 21:21:14 +0000 Subject: [Debian-med-packaging] Bug#768710: marked as done (biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting) References: <20141109070704.GA16900@xanadu.blop.info> Message-ID: Your message dated Tue, 18 Nov 2014 21:19:25 +0000 with message-id and subject line Bug#768710: fixed in biojava3-live 3.1.0+dfsg-2 has caused the Debian Bug report #768710, regarding biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 768710: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=768710 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Lucas Nussbaum Subject: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting Date: Sun, 9 Nov 2014 08:07:04 +0100 Size: 70939 URL: -------------- next part -------------- An embedded message was scrubbed... From: Olivier Sallou Subject: Bug#768710: fixed in biojava3-live 3.1.0+dfsg-2 Date: Tue, 18 Nov 2014 21:19:25 +0000 Size: 6255 URL: From ftpmaster at ftp-master.debian.org Tue Nov 18 21:21:32 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 18 Nov 2014 21:21:32 +0000 Subject: [Debian-med-packaging] ltrsift_1.0.2-3_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 18 Nov 2014 20:12:45 +0000 Source: ltrsift Binary: ltrsift ltrsift-dbg ltrsift-examples Architecture: source amd64 all Version: 1.0.2-3 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: ltrsift - postprocessing and classification of LTR retrotransposons ltrsift-dbg - postprocessing and classification of LTR retrotransposons, with d ltrsift-examples - example data for LTRsift Changes: ltrsift (1.0.2-3) unstable; urgency=low . * include patches Checksums-Sha1: a4bf6f6df72ccd19720f5cbad0d8da0f7141918e 2132 ltrsift_1.0.2-3.dsc f06fc54a4e1c6a13b2d6296af08b353567f74e97 10696 ltrsift_1.0.2-3.debian.tar.xz 9c8157961292989e4cec63f107384d8e916370e0 103330 ltrsift_1.0.2-3_amd64.deb 8b77c33b7f3660b9ee72a4a67095e2a1f0a7bb1a 292856 ltrsift-dbg_1.0.2-3_amd64.deb 8075400b637997a7829520c7ae7f1fb909c35cec 7192772 ltrsift-examples_1.0.2-3_all.deb Checksums-Sha256: b3613c57b043078a3a758e22d6fdf09bf5b223aeffe927fea70331bfe9fbf739 2132 ltrsift_1.0.2-3.dsc 41843415b915af2bdcb0fbec8c0643361731b0b7dd0f6c7d7bcf8a4842693934 10696 ltrsift_1.0.2-3.debian.tar.xz ba3a7ea83033bac2dd762d63c53cdf70c8f3ecda209dab036707cb2da9629ef5 103330 ltrsift_1.0.2-3_amd64.deb 35f28271fdaa6c03c285342f291a32569e0a6cf8ea23f62194bd8e52e8781396 292856 ltrsift-dbg_1.0.2-3_amd64.deb f016ee0c275c4d950c1e1af6163d64ccef05d39cfd21fce0eafc2379adcec588 7192772 ltrsift-examples_1.0.2-3_all.deb Files: 2e0c0111a4c9f2cc45c838560e233f26 2132 science optional ltrsift_1.0.2-3.dsc 0ba20450025a567c87e905ad8783380e 10696 science optional ltrsift_1.0.2-3.debian.tar.xz 5fefb99c9996fe128bc2e5ed77e1ffc8 103330 science optional ltrsift_1.0.2-3_amd64.deb ac71479960885d33079f5e0362a4f78b 292856 debug extra ltrsift-dbg_1.0.2-3_amd64.deb be2989cff5e39b6e132982fe007db154 7192772 science optional ltrsift-examples_1.0.2-3_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJUa6iqAAoJEFVWo04Eo2EL7zMQAJ9TAhqtf7qKsouYheWaGh8a 06ZNxuGp2SpU7/hKtQmGHELPfeR5OvxsoAqBqSZRha3yn8/Or7Zv5NVsLlVsAZcB h3DV0J5ElrToxaGYL578sb5pgrW+uv3+z/sT90ZhxQlgwVjGBdNKQytUlr+XGD12 FanS/HlptuOM1MQ7GnUWv36WHW+J1CQ/ko4P6uayM4SYQjOtmXmZrnEVDgKK2HkZ 0qv/DQR4Tw1mNSCXT5vLagTZ+iFrLfcinB6+BfErtqrB9w3ixqfu17XJIsxg/cQd vcN1mk+iLRaJoLLJOvZphWp5Y4rB1naybJwr3Xzezx/fJkAccmnQ0VqkUUHdWdgT n1+k0rD2YwxrduJDNppWu7H3eisVsQm/pXVw0cOb787WWynj8FnUHGy4Xx6nIrnD qHryuOkQsAYCG1sLJWnzD5CvaY7630jreO5u11U7pLgaXn+Zsf+BsbzOGsVherfY QXmSm5vOhEg2lYg6bfX9AAbrV6u2pwid2P7/o/XYVqkwWNtA4/4jI6e/Ed1BEJS2 ytp2oslbwW3aFv4u1/x91TM646CdoQyrF9wTqtWkcMfiLZXPTSmboyUKTJXpMwHN 6q0jYO5ghXw7omjE7TILzkK2dekgemkT8AmUvQHx7II5qXcVyn1OqKemenkeLAs0 ATnDFvHPRdqZF6NDYFG6 =CtlA -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From sascha at steinbiss.name Tue Nov 18 21:10:44 2014 From: sascha at steinbiss.name (Sascha Steinbiss) Date: Tue, 18 Nov 2014 21:10:44 +0000 Subject: [Debian-med-packaging] Bug#770079: Bug#770079: ltrsift: FTBFS on arm64 In-Reply-To: References: Message-ID: <546BB5D4.2030900@steinbiss.name> Hi Edmund, thanks for reporting this (and for your helpful hints). > The right fix for upstream would probably be to replace > > ifneq ($(MACHINE),x86_64) > > with something like: > > ifneq ($(filter $(MACHINE), i386 i486 i586 i686 x86 ),) > > That would perhaps allow them to build a 64-bit binary on a 32-bit > Intel machine by specifying "64bit=yes" as an argument to "make". I have done this now the same way I addressed this issue in its dependency package, genometools: MACHINE:=$(shell uname -m) ifeq ($(m64),yes) ifeq (,$(filter $(MACHINE),arm64 ia64 alpha mips64 mips64el aarch64)) CFLAGS += -m64 endif endif Basically, these archs won't get -m64. I have uploaded a new version and let's see if it builds now. Cheers Sascha From alex at biotec.tu-dresden.de Tue Nov 18 21:44:26 2014 From: alex at biotec.tu-dresden.de (Alex Mestiashvili) Date: Tue, 18 Nov 2014 22:44:26 +0100 Subject: [Debian-med-packaging] fix for bowtie2, how to process during freeze Message-ID: <546BBDBA.8000400@biotec.tu-dresden.de> Hi All, I've fixed #769934 for Bowtie2 in the git repository. Shell I upload the fixed package to unstable and request unblock or should it be done some other way ? Thanks, Alex From owner at bugs.debian.org Tue Nov 18 22:21:19 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Tue, 18 Nov 2014 22:21:19 +0000 Subject: [Debian-med-packaging] Bug#770079: marked as done (ltrsift: FTBFS on arm64) References: <546BC187.5000608@tetrinetsucht.de> Message-ID: Your message dated Tue, 18 Nov 2014 22:00:39 +0000 with message-id <546BC187.5000608 at tetrinetsucht.de> and subject line Re: [Debian-med-packaging] Bug#770079: Bug#770079: ltrsift: FTBFS on arm64 has caused the Debian Bug report #770079, regarding ltrsift: FTBFS on arm64 to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 770079: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=770079 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Edmund Grimley Evans Subject: ltrsift: FTBFS on arm64 Date: Tue, 18 Nov 2014 18:19:29 +0000 Size: 3508 URL: -------------- next part -------------- An embedded message was scrubbed... From: Sascha Steinbiss Subject: Re: [Debian-med-packaging] Bug#770079: Bug#770079: ltrsift: FTBFS on arm64 Date: Tue, 18 Nov 2014 22:00:39 +0000 Size: 4139 URL: From ftpmaster at ftp-master.debian.org Tue Nov 18 23:05:02 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 18 Nov 2014 23:05:02 +0000 Subject: [Debian-med-packaging] Processing of bowtie2_2.2.4-2_amd64.changes Message-ID: bowtie2_2.2.4-2_amd64.changes uploaded successfully to ftp-master.debian.org along with the files: bowtie2_2.2.4-2.dsc bowtie2_2.2.4-2.debian.tar.xz bowtie2_2.2.4-2_amd64.deb bowtie2-examples_2.2.4-2_all.deb Greetings, Your Debian queue daemon (running on host coccia.debian.org) From ftpmaster at ftp-master.debian.org Tue Nov 18 23:09:05 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 18 Nov 2014 23:09:05 +0000 Subject: [Debian-med-packaging] Processing of bowtie2_2.2.4-2_amd64.changes Message-ID: bowtie2_2.2.4-2_amd64.changes uploaded successfully to localhost along with the files: bowtie2_2.2.4-2.dsc bowtie2_2.2.4-2.debian.tar.xz bowtie2_2.2.4-2_amd64.deb bowtie2-examples_2.2.4-2_all.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Tue Nov 18 23:18:47 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Tue, 18 Nov 2014 23:18:47 +0000 Subject: [Debian-med-packaging] bowtie2_2.2.4-2_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 18 Nov 2014 23:28:33 +0100 Source: bowtie2 Binary: bowtie2 bowtie2-examples Architecture: source amd64 all Version: 2.2.4-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Mestiashvili Description: bowtie2 - ultrafast memory-efficient short read aligner bowtie2-examples - Examples for bowtie2 Closes: 769934 Changes: bowtie2 (2.2.4-2) unstable; urgency=medium . * d/control: add python dependency, needed to build bowtie2-build man page Closes: #769934 * d/watch: fix upstream url parsing, see #766878 * d/rules: remove byte-compiled bowtie2-buildc Checksums-Sha1: 0d70b8b6214c83d5e2861aeebb287a76f14a8166 2146 bowtie2_2.2.4-2.dsc a11a1a7cf8cb4a3ce7548b963fd1780a705e6222 6520 bowtie2_2.2.4-2.debian.tar.xz d7662f42e3416f97ba8000345f2f06e2324c2d67 1086670 bowtie2_2.2.4-2_amd64.deb ecbf8262e83c5f48bb01e0a9b8f2b8dd15c832bc 4878184 bowtie2-examples_2.2.4-2_all.deb Checksums-Sha256: 3e23e25468bcb35d91b667647724fe6bdb4d2dbf32f9c9aee35748d937957fbb 2146 bowtie2_2.2.4-2.dsc 847f893ec1e357b5c03ceda0ef3b81555685f7311e5364812aa1c86f2639c7bb 6520 bowtie2_2.2.4-2.debian.tar.xz 0ecd7173448eb22d85c18abf9e2e55489459e67c8036605b9acbd9c2afd7ba04 1086670 bowtie2_2.2.4-2_amd64.deb cc00b157125c07b63e1ff2d1f4786f838471ecc4890e5982e8969f3d9bdd21bb 4878184 bowtie2-examples_2.2.4-2_all.deb Files: 8a7120b65a243f6bc0964f7ab1fe740b 2146 science optional bowtie2_2.2.4-2.dsc 968d11aa32406cc5dfffd3865e90f3dc 6520 science optional bowtie2_2.2.4-2.debian.tar.xz bdcb4cf60e6cdf7d45ed4d5b13373284 1086670 science optional bowtie2_2.2.4-2_amd64.deb 5aa3a739e3c9ec066d3d2faa00188c78 4878184 science optional bowtie2-examples_2.2.4-2_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJUa8nhAAoJEBz3khEbUiiwdcgP/1xE2jIlz4+TSMvb+XyCSEWk dXJrNpUNk525I3SD0JuOHksL84hOlBWYd/iY5KzzI1c7p0s+ecOIbRp4uCEY3zLe 2GZstPlJeM9t8j6Y4yW6qLXI7Au441Nd2yDgubOgB5SaWg0C7Pg/6W9ftsJEQjyl bCeGgweOUrQkKfvEfNqKEWbBsvAk4UACnlxhPq5vXElxWLkiN5BOYXeb7ymTEaUL HOHC34BVmNaNxU4KEx6ahdhAZr2TBEg6JYrj1aYeXSmH/3I13mGmrYbisYAnGqgl IB7WPTephhepfNi9w/sSYZlNHOWdCVvk3PjpwWSdHJvd3CanYt5gaiz6N13lwOFG q7+25jggoFPYbm812sjnvm6XID2xScmdniHZGN8QYhoNQk9k+m26JujdFPlZBAZq zH5GVcG68DFqoHgj4r9EyfVo6WRc0e/8orp2qBqTQcvxGGZDF/5tef45jfeiRM77 sCI1kobYT4Dpm3azKWMaQJTPkUdwN6pGLKwEcVwGsgRD4MSuP0BrZvocBDtOfdEy /fjjL5oFE+s/xJmVQtZt6g/4UbKZhx1RCdgkRofKuyRsXq1gi+csqSDlCiNxf2wm nIRV6qQetiboUb7NjIOdy8TLk8pTCWgknSnbI2Wp6AMDB+JLxa9eCO0glrGz2cJj cU/+BA7zsccUasif1Kpe =ULbI -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From owner at bugs.debian.org Tue Nov 18 23:21:15 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Tue, 18 Nov 2014 23:21:15 +0000 Subject: [Debian-med-packaging] Bug#769934: marked as done (bowtie2: man for bowtie2-build) References: <20141117183703.8108.65685.reportbug@cds-d> Message-ID: Your message dated Tue, 18 Nov 2014 23:18:48 +0000 with message-id and subject line Bug#769934: fixed in bowtie2 2.2.4-2 has caused the Debian Bug report #769934, regarding bowtie2: man for bowtie2-build to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner at bugs.debian.org immediately.) -- 769934: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=769934 Debian Bug Tracking System Contact owner at bugs.debian.org with problems -------------- next part -------------- An embedded message was scrubbed... From: Sayutin Dmitry Subject: bowtie2: man for bowtie2-build Date: Mon, 17 Nov 2014 21:37:03 +0400 Size: 3430 URL: -------------- next part -------------- An embedded message was scrubbed... From: Alexandre Mestiashvili Subject: Bug#769934: fixed in bowtie2 2.2.4-2 Date: Tue, 18 Nov 2014 23:18:48 +0000 Size: 5546 URL: From plessy at debian.org Wed Nov 19 00:18:25 2014 From: plessy at debian.org (Charles Plessy) Date: Wed, 19 Nov 2014 09:18:25 +0900 Subject: [Debian-med-packaging] fix for bowtie2, how to process during freeze In-Reply-To: <546BBDBA.8000400@biotec.tu-dresden.de> References: <546BBDBA.8000400@biotec.tu-dresden.de> Message-ID: <20141119001825.GB28548@falafel.plessy.net> Le Tue, Nov 18, 2014 at 10:44:26PM +0100, Alex Mestiashvili a ?crit : > > I've fixed #769934 for Bowtie2 in the git repository. > Shell I upload the fixed package to unstable and request unblock or > should it be done some other way ? Hi Alex, my gut feeling is that the bug is not grave enough to justify an unblock request. (I recently read on planet.debian.org that the release team is getting hundreds of requests, so I propose to be stringent on what we send.) Have a nice day, and thanks for the quick correction. Charles -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan From info at ofpd.biz Wed Nov 19 08:46:15 2014 From: info at ofpd.biz (OFPD) Date: Wed, 19 Nov 2014 08:46:15 +0000 Subject: [Debian-med-packaging] mail from VEC Message-ID: The OPEC Fund for International Development Foreign Processing Department OPEC House, Martin Street, Birstall, Batley West Yorkshile WF17 9PJ ? UNITED KINGDOM Attn: Private. We wish to notify you of the ongoing Private Sector / Micro Credit Loan Scheme to viable international investors and business enterprenour in the Human Resources and community Development of OFID (Opec Fund for International Development). The Ofid presently focus it attention on Agriculture, Water and Sanitation, Health, Education, Telecommunication, Industry, Transport and several other investment purposes. The Private Sector Loan / Micro Credit Sheme represents an additional, complementary means through which OFID can fulfil its core mission of assisting its partner countries in their socio-economic development. By extending micro credit loans and equity investments, the Ofid Loan seeks to encourage the growth of productive private enterprise and local capital markets. The scheme provides long-term, fixed-rate financing to small businesses to acquire real estate or machinery or equipment for expansion or modernization. The Ofid manages risk by partnering with other commercial banks to support commercially viable, privately-owned enterprises. State-owned institutions may also be eligible, if they are commercially managed as autonomous enterprises or act as a channel of support for local private enterprises. In addition, public-private partnership projects are supported when operated on private enterprise principles. Projects selected are required to have a high developmental value. Through providing credit lines to financial intermediaries, the Facility prioritizes support for micro-,small,- and medium-sized enterprises, whose activities drive economic growth and play a key role in employment generation and poverty alleviation. The Facility also gives priority to the energy sector as part of the wide range of solutions delivered by OFID in fighting energy poverty, one of OFID?s key strategic objectives. The Ofid private Sector Loan / Micro Credit Scheme as a channel of encouraging investors in their line of trade has estimated the lending for a period of 10 years with 0% percent interest rate. As this will help promote local capital market and development. On the bases of above subject, you are to forward an APPLICATION LETTER OF INTEREST via email to your assigned processing officer Dir. Eric McGregor (mcgregoreric155 at hotmail.com ) as soon as possible or call +44 753 826 7811 to enable immediate commencement of your loan processing. Regards, Mrs. Ikhlass Al-Sheikhly Head of Grants Unit, OFID The OPEC Fund for International Development Foreign Processing Department -------------- next part -------------- An HTML attachment was scrubbed... URL: From info at ofpd.biz Wed Nov 19 08:46:15 2014 From: info at ofpd.biz (OFPD) Date: Wed, 19 Nov 2014 08:46:15 +0000 Subject: [Debian-med-packaging] mail from VEC Message-ID: <2FAA8CA98DA377302F3F3EE14C6783D6F6F30983@PC> The OPEC Fund for International Development Foreign Processing Department OPEC House, Martin Street, Birstall, Batley West Yorkshile WF17 9PJ ? UNITED KINGDOM Attn: Private. We wish to notify you of the ongoing Private Sector / Micro Credit Loan Scheme to viable international investors and business enterprenour in the Human Resources and community Development of OFID (Opec Fund for International Development). The Ofid presently focus it attention on Agriculture, Water and Sanitation, Health, Education, Telecommunication, Industry, Transport and several other investment purposes. The Private Sector Loan / Micro Credit Sheme represents an additional, complementary means through which OFID can fulfil its core mission of assisting its partner countries in their socio-economic development. By extending micro credit loans and equity investments, the Ofid Loan seeks to encourage the growth of productive private enterprise and local capital markets. The scheme provides long-term, fixed-rate financing to small businesses to acquire real estate or machinery or equipment for expansion or modernization. The Ofid manages risk by partnering with other commercial banks to support commercially viable, privately-owned enterprises. State-owned institutions may also be eligible, if they are commercially managed as autonomous enterprises or act as a channel of support for local private enterprises. In addition, public-private partnership projects are supported when operated on private enterprise principles. Projects selected are required to have a high developmental value. Through providing credit lines to financial intermediaries, the Facility prioritizes support for micro-,small,- and medium-sized enterprises, whose activities drive economic growth and play a key role in employment generation and poverty alleviation. The Facility also gives priority to the energy sector as part of the wide range of solutions delivered by OFID in fighting energy poverty, one of OFID?s key strategic objectives. The Ofid private Sector Loan / Micro Credit Scheme as a channel of encouraging investors in their line of trade has estimated the lending for a period of 10 years with 0% percent interest rate. As this will help promote local capital market and development. On the bases of above subject, you are to forward an APPLICATION LETTER OF INTEREST via email to your assigned processing officer Dir. Eric McGregor (mcgregoreric155 at hotmail.com ) as soon as possible or call +44 753 826 7811 to enable immediate commencement of your loan processing. Regards, Mrs. Ikhlass Al-Sheikhly Head of Grants Unit, OFID The OPEC Fund for International Development Foreign Processing Department -------------- next part -------------- An HTML attachment was scrubbed... URL: From edmund.grimley.evans at gmail.com Wed Nov 19 09:50:18 2014 From: edmund.grimley.evans at gmail.com (Edmund Grimley Evans) Date: Wed, 19 Nov 2014 09:50:18 +0000 Subject: [Debian-med-packaging] Bug#770162: htslib: fai_build_core in faidx.c assumes char is signed Message-ID: Source: htslib Version: 1.1-1 The code looks like this: faidx_t *fai_build_core(BGZF *bgzf) { char c, *name; ... while ( (c=bgzf_getc(bgzf))>=0 ) { Clearly on architectures where plain char is unsigned (arm64, armhf, ...) this won't work (infinite loop). I'd suggest changing the type of c from char to int, which is the return type of bgzf_getc. This bug is apparently the cause of samtools failing to build: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=762647 I can't take credit for identifying the issue as domibel seems to have announced it here on Oct 2: http://github.com/samtools/samtools/issues/304 From edmund.grimley.evans at gmail.com Wed Nov 19 09:56:33 2014 From: edmund.grimley.evans at gmail.com (Edmund Grimley Evans) Date: Wed, 19 Nov 2014 09:56:33 +0000 Subject: [Debian-med-packaging] Bug#762647: samtools: FTBFS: test suite errors Message-ID: This can be fixed on arm64 at least by fixed this bug in htslib: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=770162 From rachelrachelrachrachel at outlook.com Wed Nov 19 12:30:07 2014 From: rachelrachelrachrachel at outlook.com (Rachel Rach) Date: Wed, 19 Nov 2014 12:30:07 +0000 Subject: [Debian-med-packaging] I am waiting to hear from you Message-ID: Hello,I'm glad to get back to you and also to know what the problem is that i have not received a response from you after my previous mail to this address,please respond to me because there are very important topics that I want to discuss with you.i will be waiting to read from your reply soon, Regards,Rachel. -------------- next part -------------- An HTML attachment was scrubbed... URL: From alex at biotec.tu-dresden.de Wed Nov 19 15:26:22 2014 From: alex at biotec.tu-dresden.de (Alex Mestiashvili) Date: Wed, 19 Nov 2014 16:26:22 +0100 Subject: [Debian-med-packaging] fix for bowtie2, how to process during freeze In-Reply-To: <20141119001825.GB28548@falafel.plessy.net> References: <546BBDBA.8000400@biotec.tu-dresden.de> <20141119001825.GB28548@falafel.plessy.net> Message-ID: <546CB69E.8050505@biotec.tu-dresden.de> On 11/19/2014 01:18 AM, Charles Plessy wrote: > Le Tue, Nov 18, 2014 at 10:44:26PM +0100, Alex Mestiashvili a ?crit : >> I've fixed #769934 for Bowtie2 in the git repository. >> Shell I upload the fixed package to unstable and request unblock or >> should it be done some other way ? > Hi Alex, > > my gut feeling is that the bug is not grave enough to justify > an unblock request. > > (I recently read on planet.debian.org that the release team > is getting hundreds of requests, so I propose to be stringent > on what we send.) > > Have a nice day, and thanks for the quick correction. > > Charles > Hi Charles, I see, I also had doubts about that. Thanks, Alex From wilson_willa at yahoo.in Wed Nov 19 20:57:07 2014 From: wilson_willa at yahoo.in (Mr Wilson Willa) Date: Thu, 20 Nov 2014 02:57:07 +0600 (BDT) Subject: [Debian-med-packaging] THE FIRST $5000.00 WAS SENT TODAY Message-ID: <56430.196.46.245.146.1416430627.squirrel@mail.promotex-bd.com> Attn: Good day Your fund of $2.500, 000.00 has been released and the transfer began today through western union money transfer. So, contact Western Union Director Dr Kevin Anthony, with your full information to enable them give you Sender Name, Question and Answer to pick up your First Payment MTCN= 8845-115-202 and ask him what you need to do to enable them activate your account and renew of your file so that you will be able to pick up your first payment $5000 per day until total funds 2.5millions is finish. Your Receiver name-------------- You?re Country-------------------- You?re City----------------------- Your Tell----------------------- You?re Id------------------------- you're Age----------------------- Forward the information here ( union.western at barid.com ) Or Call Dr Kevin Anthony On tel phone: +229-67377275 Thanks Mr Wilson Willa From sonu at web-innovators.biz Wed Nov 19 06:46:06 2014 From: sonu at web-innovators.biz (sonu at web-innovators.biz) Date: Wed, 19 Nov 2014 12:16:06 +0530 Subject: [Debian-med-packaging] Quality Customer Service Message-ID: <39c601d003c4$c16576f0$443064d0$@biz> In Favour of A Very Good Morning, Hope you are keeping well I am Tini, SEO Expert. Are you not getting enough with your website: www.lists.alioth.debian.org Don't miss out in cut throat competition. You should check for Website optimization - SEO and SMM, Social Media. We have a good team of Professionals who are experts in website optimization, designing, SMM, Search Engine Marketing and Online Business Optimization. We can take care of time consuming duties for you in half of your in-house resource cost. We are an expert SEO firm worked over 300 campaigns search engine and social media campaigns successfully. Getting Top 3 Position in Search Engines is Must for every Website if you are really serious to do Online Business. If you are not in top 10 it means you are getting only 5% of visitors for that particular keyword. Let me know if you are interested and we would be happy to share our Methodologies, past work details, Offer, client Testimonials and Prices etc. I look forward to hear from you soon! We have expertise in the following areas:- . SEO, . SMO, . Website Development, . Website Maintenance. . Content Development Kind Regards, Tini SEO Expert Karol Bagh New Delhi (India) -------------- next part -------------- An HTML attachment was scrubbed... URL: From ftpmaster at ftp-master.debian.org Thu Nov 20 22:05:57 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Thu, 20 Nov 2014 22:05:57 +0000 Subject: [Debian-med-packaging] Processing of fastaq_1.6.0-1_amd64.changes Message-ID: fastaq_1.6.0-1_amd64.changes uploaded successfully to localhost along with the files: fastaq_1.6.0-1.dsc fastaq_1.6.0.orig.tar.gz fastaq_1.6.0-1.debian.tar.xz fastaq_1.6.0-1_all.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Thu Nov 20 22:18:49 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Thu, 20 Nov 2014 22:18:49 +0000 Subject: [Debian-med-packaging] fastaq_1.6.0-1_amd64.changes ACCEPTED into experimental Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 18 Nov 2014 16:34:01 +0000 Source: fastaq Binary: fastaq Architecture: source all Version: 1.6.0-1 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Jorge Soares Description: fastaq - FASTA and FASTQ file manipulation tools Changes: fastaq (1.6.0-1) experimental; urgency=medium . * New upstream release Checksums-Sha1: 2c9f2144c105fb47043a0a2083c7c40e2e2bc823 2077 fastaq_1.6.0-1.dsc 235b3edba9fa6d188de352e10c70c3e374be6226 58996 fastaq_1.6.0.orig.tar.gz 9512a5e2a4e60a700c484495bb2ca38ed1ef20fe 8272 fastaq_1.6.0-1.debian.tar.xz 56c0fc97401ba421fbeef1a75474faa3eeef6262 49596 fastaq_1.6.0-1_all.deb Checksums-Sha256: 94ed9c5e02f3ec1772ffaf86e1fd68aff32abf21f102b11a9e08efa33ef74e65 2077 fastaq_1.6.0-1.dsc 79b38753151b9748dee74001b4f5cecd69abce0b29be4ff52f660ed7bba2d3fe 58996 fastaq_1.6.0.orig.tar.gz 64ea19109b90640e1debafb3ad132ba4f205651fbb3b2fd8e66ab7313c2b79a3 8272 fastaq_1.6.0-1.debian.tar.xz edebe9e47ba83d01fef0c48e62e7c16eee2247f1c9323ba0dfb7bb722e31bfea 49596 fastaq_1.6.0-1_all.deb Files: 56f4d82b5acbe0ff62d7a99249883b04 2077 science optional fastaq_1.6.0-1.dsc d9e8d300f1e84de2cbfcc403c3586134 58996 science optional fastaq_1.6.0.orig.tar.gz 197e7ec5141d95b10cace1d47d886365 8272 science optional fastaq_1.6.0-1.debian.tar.xz 4dcb35d68e28fd589d11dad767a20c3d 49596 science optional fastaq_1.6.0-1_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQJ8BAEBCgBmBQJUbjmpXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQ2MjAxRkJGRkRCQkRFMDc4MjJFQUJCOTY5 NkZDQUMwRDM4N0I1ODQ3AAoJEJb8rA04e1hH4yUP/2JE1Ppx7vingQrDneS1u+TL kyj1i5sOZLo4UBljd3sSAqSusWEmt6xNt93oMtCftsbgHJvalNVDGGyZwpsJQRUx lA6i1uoumlnkI4LrZyTJOS3g4joTD5jAHTX2Ehi9yIBymCZ63cgXK9iQ4VRChklD 60cSubwSLRPoxON7h+b0Y7WcU8HqR305P0G1PXv4friL81IpktZeWkLTlUTt2jRJ NW3ip6/JCevgedI9QEff6Na1KjyWMHguOnOv2AcGWIJi7HNUkG6XopH+GfJFvt3T PJmp71nb0v4GBvX10U2JUBdD00iZ+k4xMaLMfiOCD4cTa4w3x7jLv413dd5PwUeI 0rRMKWPtDhJub+93hnEtxBuaUNfiPXmA3COnjjq06bORVz5Q39FRHX1CpbCgHvLA pfhRcunYSKp3/37VPn5G5SwPXc84Fpa7sOWpV+WO4VYC4n3O0iPSAFJTw6yMKFme WJdLAG5h51EEEP9RFQiWjjzWzVaxQD5jCNQ/Ty17M8jZVeZ5Pl7Itdcx3ru4JEXc 0xTzQQnc0XzmDuEZAr/opAXsbHgZIMgLXH1iASDmMg1r48DrmpRNHsiaqXPG/H0x Zww2c/2nE1kU3K2D7poOa/l+KtJXux4MDgkKHH91D8ckwNGYhxl8wH9pkKoOTGfo VXGw24QEa38rGT2P1VMx =6Jhl -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From ftpmaster at ftp-master.debian.org Fri Nov 21 07:13:05 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 07:13:05 +0000 Subject: [Debian-med-packaging] Processing of circos_0.67.2-1_amd64.changes Message-ID: circos_0.67.2-1_amd64.changes uploaded successfully to localhost along with the files: circos_0.67.2-1.dsc circos_0.67.2.orig.tar.gz circos_0.67.2-1.debian.tar.xz circos_0.67.2-1_all.deb otf-symbols-circos_0.67.2-1_all.deb fonts-circos-symbols_0.67.2-1_all.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Fri Nov 21 07:13:06 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 07:13:06 +0000 Subject: [Debian-med-packaging] Processing of circos-tools_0.20-1_amd64.changes Message-ID: circos-tools_0.20-1_amd64.changes uploaded successfully to localhost along with the files: circos-tools_0.20-1.dsc circos-tools_0.20.orig.tar.gz circos-tools_0.20-1.debian.tar.xz circos-tools_0.20-1_all.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Fri Nov 21 07:13:06 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 07:13:06 +0000 Subject: [Debian-med-packaging] Processing of minia_1.6906-1_amd64.changes Message-ID: minia_1.6906-1_amd64.changes uploaded successfully to localhost along with the files: minia_1.6906-1.dsc minia_1.6906.orig.tar.gz minia_1.6906-1.debian.tar.xz minia_1.6906-1_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Fri Nov 21 07:18:51 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 07:18:51 +0000 Subject: [Debian-med-packaging] circos_0.67.2-1_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 25 Oct 2014 08:45:17 +0200 Source: circos Binary: circos otf-symbols-circos fonts-circos-symbols Architecture: source all Version: 0.67.2-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: circos - plotter for visualizing data fonts-circos-symbols - plotter for visualizing data - standard fonts otf-symbols-circos - transitional dummy package Changes: circos (0.67.2-1) unstable; urgency=medium . * New upstream release * cme fix dpkg-control * debhelper 9 * Depends: libstatistics-basic-perl * Add autopkgtest [Olivier Sallou] * refresh patches Checksums-Sha1: 487929b4386d98be2d12c89412fe45805c90c682 2109 circos_0.67.2-1.dsc de47107518fd1c9920a925b2992a8946d7d4a48d 28015396 circos_0.67.2.orig.tar.gz b3949f3afef8a88293bff73864737ffa2ea9bead 6968 circos_0.67.2-1.debian.tar.xz 04e5987d1e443a7c555aa859a84597c6ee8602b8 21996754 circos_0.67.2-1_all.deb eb160a5820eb8efc77b95921cb2ff6365dce306e 18714 otf-symbols-circos_0.67.2-1_all.deb 0113f36fb8ce25aca32d0bc5c329c87a0ea7c240 34004 fonts-circos-symbols_0.67.2-1_all.deb Checksums-Sha256: bf629b2dfc0e19e2e99eaea7999574e6aedc9326a636ea797c4d4fa11d67843b 2109 circos_0.67.2-1.dsc eab95b2bdd81392594810a04fb782c056ce2192dc3dc3320489e77c200c2c965 28015396 circos_0.67.2.orig.tar.gz c9f1afa8a35e0059aed8c4f417b07790dd735b1625218ea1592c6752602f89fe 6968 circos_0.67.2-1.debian.tar.xz 6a3fcc48bbf7fdad4bd7b9da4860f2229d57b2dcb9a8008825355aec6e26627d 21996754 circos_0.67.2-1_all.deb 7d764d1a6e6d5849ef7418df6cb68aaef057d639b08e22b21808533028a9340c 18714 otf-symbols-circos_0.67.2-1_all.deb 03b9c00e1270c6a4352f4871372fa6d43cd2ec6b1fbfbb29b08f4be1939b52b9 34004 fonts-circos-symbols_0.67.2-1_all.deb Files: b3da547877091fe890572a91987847c6 2109 science optional circos_0.67.2-1.dsc 8fbdf67beb9d00695febd429e75d6cb3 28015396 science optional circos_0.67.2.orig.tar.gz 5652073fab1e0f7b0210a2dba29c0eed 6968 science optional circos_0.67.2-1.debian.tar.xz a91a213d7802bbaa2c3c0b168facfaf6 21996754 science optional circos_0.67.2-1_all.deb bd7743cf2d756de3bf0bfe8fafa96ee9 18714 oldlibs extra otf-symbols-circos_0.67.2-1_all.deb 29a8a158e625b029ad03362cd6f9b259 34004 fonts optional fonts-circos-symbols_0.67.2-1_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v2 iQIcBAEBCAAGBQJUbt6UAAoJEHjcaNsybYQ464EP+wYRVIOhr+1aRvXHm1g8DmKv oiByPmU9zlJK6u9MaZ6iI9cNNY/ocWTEBiWluHFX8H/O8YUwOYW/+Cyf574kNaGh yTnSGEKqd+M5kw0qcet8AyNDl6PzYrG/AXattEl2dv2b4e4iaOAJcTAv2td/A58H jtAglRrStL3VW9PiKx1/+3/bccGtdQupSHKgydSH2IDXu5xFyV8Y0H63Cb252tBG Iggbq2G8F0BZESI1ibs64xBG8yWxTM6yn1cFRQPL7D3RWuBYxFzhD5wHxBFC+skN 6NsnK1yakHERwm/kAXYL4kau6gSt8Yw5WAv6CXgJUNejwMulzUGOAQOV7LYqatPA 3njJMYfN2MKfe77HLQdl1Ee2mI0PC5B3e+i/j7nPyyGSOor3xL7jeKd670kslA7a vxJSBbLpGDfQYBo1o6bzLKLDUdac2z3+JjVKZPaakmiK0q+EC/CpO/3rzuN46eRa zItAAjEnnJj3kiICxVhxmZf6cE6UsTrTkM+wXADmFl/lB3T4k3mkPKj1wNZPb2YP ZiVMjqkxVeRqzGx9843168IwVvOCx76k4Sg8hF9nrFRay694rn1a4Sq2FHlugQYF 3MM6QH8hzUuvxt7qUhRVDZ+cQLna4A+z8HHw3/wear6tq9MjEmMX7xBOeVl3i4eW /zvJviVzcT1RpZi/e4+D =d4s9 -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From ftpmaster at ftp-master.debian.org Fri Nov 21 07:19:02 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 07:19:02 +0000 Subject: [Debian-med-packaging] circos-tools_0.20-1_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 21 Nov 2014 07:44:07 +0100 Source: circos-tools Binary: circos-tools Architecture: source all Version: 0.20-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Olivier Sallou Description: circos-tools - plotter for visualizing data - helper utilities Changes: circos-tools (0.20-1) unstable; urgency=medium . [ Andreas Tille ] * New upstream version * cme fix dpkg-control * debhelper 9 Checksums-Sha1: 8905cebbad4a18444cee0c2c19e05b9aa82bf0de 1999 circos-tools_0.20-1.dsc de1d5287fabf21f0107ae6c9a2fcea89f3ff1d92 18495067 circos-tools_0.20.orig.tar.gz 4d679339afe86e8f1f7e8c473ba41d80919acab4 2176 circos-tools_0.20-1.debian.tar.xz fc0b45fe668fc437bb3ad614665a4b6a182c2f67 14654026 circos-tools_0.20-1_all.deb Checksums-Sha256: 7cfa903fe024e2011357cba2820dd7e5d51f70c0303df6ea0c06ffed2c04fb36 1999 circos-tools_0.20-1.dsc 07cb34740b42b778cd97ed971045d6a59190b521694b6c487b762d934b7554d1 18495067 circos-tools_0.20.orig.tar.gz 81489b7c9998526792615c398dbfe6e653a2a3a46235ababe301f31852c12d22 2176 circos-tools_0.20-1.debian.tar.xz c4ac1b46176b64fbf07533651b3e787b9a61a60f7f1d290081fb6aed9ae7c15a 14654026 circos-tools_0.20-1_all.deb Files: 0c1780b54f654572281a008860dd1009 1999 science optional circos-tools_0.20-1.dsc 0bbd463a9dd0571ae82159e38dbcac0d 18495067 science optional circos-tools_0.20.orig.tar.gz c3ac11cd44d236daf5a1efd95eba41ff 2176 science optional circos-tools_0.20-1.debian.tar.xz d04ad39d8b1a6e4664111af5b538cb7e 14654026 science optional circos-tools_0.20-1_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v2 iQIcBAEBCAAGBQJUbuDDAAoJEHjcaNsybYQ4y5IP/3AgdbKwKDmkEqGr2afsws/l twiIhA+yrWq1V4oaZn0byTjBDayyl8uf+b8okT1nO9YN98/w28c+ndQ/bi800Xq7 kQDpo704HpxJByJoxvuLbWB97ZnFAOpCXMMiL0C592P8tvlCPNNniykG/lYkHskL IuYmRijnAzqsuVaqvbMiQcjq4Cit/htQq1enTI0bBGbmf2HSw3TMaoj4tq/zBY8f M9CgIPw8QRTpeWYLTbL0BcwsbhIGpo2UXhinXnxyiy8tGPfnNDCogT9/MQB575qk I/jxUVppULRyODEVwcracUQWOnlkkJtAq1xR5kBSuAQJc2bT7WRumcbMfuSs8WfR 517R9bsA0FRiWrv9Xn74ibaoKMGxf7MyXIB9DL6wMDMfqSCr/jSwd6dQm3FXSMjj lgNhkmdeCsSzXI3/wm/zSoaJdsRWsqvhVC7WUiHTqj4TlhDBoSYWiV7s3AKGslHl 84RW+jV9Gmbk4kzWJ9shFyob3KFhsNOOGLIxcjvdmvznHBOqEORy5ANTBa+ZVKPu GEO1GZ24FlVLDbagAH0HTgh4x9LXpwBzS/GtshhvLnQY0g811dXpm6y7AqXJ53KH nAGYPaTjHzA9pi35DM9FBdpnBQkAXKMVzlT/SiO3CEx0NqA1YSSf4mWdu1SUlVZq vIfTslcCFwHTJLpDaKzm =gZEC -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From ftpmaster at ftp-master.debian.org Fri Nov 21 07:19:10 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 07:19:10 +0000 Subject: [Debian-med-packaging] minia_1.6906-1_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 21 Nov 2014 07:55:05 +0100 Source: minia Binary: minia Architecture: source amd64 Version: 1.6906-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Olivier Sallou Description: minia - short-read biological sequence assembler Changes: minia (1.6906-1) unstable; urgency=medium . * New upstream release $ d/patches: updates patches to new release Checksums-Sha1: 7ae0f410fc61439b325fc122f0b2fe2a0489a15c 1933 minia_1.6906-1.dsc f54003afbd4e2f3e8b52db08e1d7fca644e751fa 1411488 minia_1.6906.orig.tar.gz fc0b8595927029425fa94a315657008c754b57b2 10360 minia_1.6906-1.debian.tar.xz 7ece1b321ee7c1bea4094d88e8d6884a7319c8b7 67596 minia_1.6906-1_amd64.deb Checksums-Sha256: a5c7b4f11028aca610cb7c07fb415ebd1259c09ef613907c3388b7eb1cdfccad 1933 minia_1.6906-1.dsc 74715bf28d41ca7a25b9c76fd568603a6d4814a193d44654582ca407e8b7f4b3 1411488 minia_1.6906.orig.tar.gz 20f35a48dbf910d8a6db50752499272cab9eaeb5c6e00d1dabbce6d4de4df758 10360 minia_1.6906-1.debian.tar.xz 560882e380e942d1893f4170a59869d68cc7745543fcba4f9298c513cd0db14e 67596 minia_1.6906-1_amd64.deb Files: ddc692f53250b9c823d2435b774b9c33 1933 science optional minia_1.6906-1.dsc ab4da58695f713025bba2e8144ee1d15 1411488 science optional minia_1.6906.orig.tar.gz dda5dd54de6a01b268fa45d450dd7870 10360 science optional minia_1.6906-1.debian.tar.xz 1d0660eedad4095877d982af2af2b91f 67596 science optional minia_1.6906-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v2 iQIcBAEBCAAGBQJUbuTkAAoJEHjcaNsybYQ4SLMP/11Oq5P0Mp/cNPF5b0FjbM/y aXoSIgXh2cGpJjEeSWDfG8OiY4aWfEJeIBtvzJeHlTy+mB2J3F5jWaNlSTFEhwaP 5FpoIBACmm6Mxbj5dtzqzbsixsTle0SkXljj9LMe1CxxMaNfD8V5QB5a9BLPfBMY ty8zsyuop01BYcDHJLmuje6doqLRpzfFd2mikPqLekP2xB8d1g19zkARJWSHfIOu D6wXyy3l0c7S9MfP9G7NC/pHul1hC3JSi9jisDjvDwa5FIE9EeEjsgEtfCafm762 9zPolKZ/nMOpeE/FzunQjB0yTXxJBNKgb9zu8h7tg9XGo59akeXYJu/s44t/Ubce IR8qKGJyW7ERAoOQ9kgBlYH7LKIEd0XxpG2r3HCc+Au7rIycB8vcbYAA7kSlsoba gmC4GijsZvcillqFekqjHCjgaotSJyfyEbGt2ftjFbILDFOBEGkUBY2sUzbR2L9t 5zrpUl3PNsOyfI8NGi2ViDSYMherdyrbvuML884GDzYrpypU9x+qI3Slp50BrzPE nMcoU8fKlrjqop1wLyguS1Uo0w95ppQCO6A74z+Yca8J+d0Z0t/Y4LQVnQ6AqIR0 +Uq6ZjgneMLzwxAbbDGxmBje8XYE6jKcKo8NseTDRH2VtIwveULrVogJ9gOr7Er2 i8DDaCgfZ3cG0qi2kCeg =UKh+ -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From ftpmaster at ftp-master.debian.org Fri Nov 21 17:24:11 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 17:24:11 +0000 Subject: [Debian-med-packaging] Processing of discosnp_1.2.6-1_amd64.changes Message-ID: discosnp_1.2.6-1_amd64.changes uploaded successfully to localhost along with the files: discosnp_1.2.6-1.dsc discosnp_1.2.6.orig.tar.gz discosnp_1.2.6-1.debian.tar.xz discosnp_1.2.6-1_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From barrister.edwardhartnett at gmail.com Fri Nov 21 17:24:22 2014 From: barrister.edwardhartnett at gmail.com (EDWARD HARTNETT) Date: Fri, 21 Nov 2014 18:24:22 +0100 Subject: [Debian-med-packaging] hi Message-ID: ?? ? *?Drah? p??teli. Jsem advok?t Edward Hartnett, soukrom? pr?vn?k m?ho zesnul?ho klienta, pan DE P??i v?m, proto?e mand?tem, kter? z?skala od banky m?ho zesnul?ho klienta, aby zajistil, ?e jeho fond (USD 7,500,000,00) je propu?t?n pro jeho bl?zkou nebo jeho n?stupce, nebo ?e banka zabav? fondu a ?e m? srdce m? vedlo k naps?n? k v?m. Jsem zde t?m, ?e ??d? o pomoc z?skat tyto pen?ze p?evedeny na v?s v m??e, kter? bude dohodnut podle n?s oba. Pokud jste ochotni mi pomoci, Moje ??slo je + 228-909-321-85 a je d?v?rn? t?to transakce, a m??ete mi pros?m zkusit, jestli se m??ete dostat m? na m? lince z va?? zem? se tak, ?e m??eme diskutovat v?ce o tomto n?roku, nebo si m? p??mo odpov?d?t na m?j soukrom? e-mail (barrister.edwardhartnett at gmail.com ). Barrister Edward Hartnett (Esq.) Hlavn? prokur?tor, Lome - Togo* -------------- next part -------------- An HTML attachment was scrubbed... URL: From ftpmaster at ftp-master.debian.org Fri Nov 21 17:33:47 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 17:33:47 +0000 Subject: [Debian-med-packaging] discosnp_1.2.6-1_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Fri, 21 Nov 2014 17:56:37 +0100 Source: discosnp Binary: discosnp Architecture: source amd64 Version: 1.2.6-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Olivier Sallou Description: discosnp - discovering Single Nucleotide Polymorphism from raw set(s) of rea Changes: discosnp (1.2.6-1) unstable; urgency=medium . * New upstream release Checksums-Sha1: 9f0c671b17417f9516d2c2b62782a53a3a14cd0e 2009 discosnp_1.2.6-1.dsc 6a6032ecc47c5eda432e2d31b828f0734fe5ca9b 581631 discosnp_1.2.6.orig.tar.gz 8e353563fc708782f5db954f258b88f22aa559c0 11392 discosnp_1.2.6-1.debian.tar.xz 6bc95891e8a9737b1fa5272aa583144652d40f7f 141136 discosnp_1.2.6-1_amd64.deb Checksums-Sha256: c10c4cfac2f74952361211814c03d2760500e9a2301c9c4cbe6dbec3863c8d6d 2009 discosnp_1.2.6-1.dsc dd0474fdb3d17756debf2f3ac195411b404ed3a8b2eb7456a19432fa5f321c48 581631 discosnp_1.2.6.orig.tar.gz fdf66cf3a033f233008f9befa871142760ea9692e9c5635636b15c45330ab10f 11392 discosnp_1.2.6-1.debian.tar.xz 8958901266310daf427332ddbe7f40db25d9d03b32b5b860fb60662a8ca6a8e2 141136 discosnp_1.2.6-1_amd64.deb Files: b09e162f87bcc3e9e4c89c18e96aadee 2009 science optional discosnp_1.2.6-1.dsc 28f3a9e15aeb9a29c40caf0860c33f07 581631 science optional discosnp_1.2.6.orig.tar.gz 84895b576a671eca6de13574b91e9299 11392 science optional discosnp_1.2.6-1.debian.tar.xz eac34f6e38e38b55758a73fa6bda6fa1 141136 science optional discosnp_1.2.6-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v2 iQIcBAEBCAAGBQJUb3QKAAoJEHjcaNsybYQ43YoP/RKxwQScvonVKcZPjuZUY8cS 8Fn9thhM20Xobh093TG5+2Y+xyY6uIPFnKiHrZ2jvC5vANLx6UnSOJZFMOSN18Jq l39W+NpBMZw6fdi10brgQA83jy2GYz+aSf0eahIvBSX78R+Eja9r0v4KCF0Xe+Eb /uPUmLxhn2A9+9sgBvtey316MzdERbMlXwuSrUhv9CJvslhUXZANZK3ereZaNT7w l1hbcDLwBXarB675+UC2weHFAnE+BH3SyqHIXRSldDb4GleLeJsBNK2zeMLRsfKP RFMi6mkqkSX7+5vP7cDHgKi7w3W6XYH5CHLv1seMwouTGeWCDm2+MjFCg1JTJDqU 92XcCpD0Qu7MX3havjZyjk03LPvd2dbKxEtCQOPgz8PUDsVd24FDvOKqqETjBQed eMdDEoFkO9dLf53VBI4JWK/xnxK91OQZ06aFzfAAGuPTCcrsTQtNsBRD3MZnU7Fg jwt6sm4IIUu8anGOuedb4fo90Wg5L3yltefWmjAbFGaj7iQCP6S8KX9JSvOioT7s j7jvdyO3VbOsUuB+Z37EI01cpuWcHOFpkvB/P/3hHDQvR+hlTDzf4AtCayUkhLBg F5no3up9kNBgPZURtwGu7uC3Zy+PYzYCblji9s4Xjnu9YGwnPAteKPdwpGzqWx9B wT0kDqIlbCR+ezx3uSD2 =tGFJ -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From ftpmaster at ftp-master.debian.org Fri Nov 21 18:04:20 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 18:04:20 +0000 Subject: [Debian-med-packaging] Processing of kmc_2.0+dfsg-1_amd64.changes Message-ID: kmc_2.0+dfsg-1_amd64.changes uploaded successfully to localhost along with the files: kmc_2.0+dfsg-1.dsc kmc_2.0+dfsg.orig.tar.gz kmc_2.0+dfsg-1.debian.tar.xz kmc_2.0+dfsg-1_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Fri Nov 21 18:14:21 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 18:14:21 +0000 Subject: [Debian-med-packaging] Processing of aegean_0.10.2+dfsg-1_amd64.changes Message-ID: aegean_0.10.2+dfsg-1_amd64.changes uploaded successfully to localhost along with the files: aegean_0.10.2+dfsg-1.dsc aegean_0.10.2+dfsg.orig.tar.xz aegean_0.10.2+dfsg-1.debian.tar.xz aegean_0.10.2+dfsg-1_amd64.deb aegean-dbg_0.10.2+dfsg-1_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Fri Nov 21 18:18:47 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 18:18:47 +0000 Subject: [Debian-med-packaging] aegean_0.10.2+dfsg-1_amd64.changes is NEW Message-ID: binary:aegean is NEW. binary:aegean-dbg is NEW. source:aegean is NEW. Your package has been put into the NEW queue, which requires manual action from the ftpteam to process. The upload was otherwise valid (it had a good OpenPGP signature and file hashes are valid), so please be patient. Packages are routinely processed through to the archive, and do feel free to browse the NEW queue[1]. If there is an issue with the upload, you will recieve an email from a member of the ftpteam. If you have any questions, you may reply to this email. [1]: https://ftp-master.debian.org/new.html From ftpmaster at ftp-master.debian.org Fri Nov 21 18:19:05 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Fri, 21 Nov 2014 18:19:05 +0000 Subject: [Debian-med-packaging] kmc_2.0+dfsg-1_amd64.changes is NEW Message-ID: binary:kmc is NEW. source:kmc is NEW. Your package has been put into the NEW queue, which requires manual action from the ftpteam to process. The upload was otherwise valid (it had a good OpenPGP signature and file hashes are valid), so please be patient. Packages are routinely processed through to the archive, and do feel free to browse the NEW queue[1]. If there is an issue with the upload, you will recieve an email from a member of the ftpteam. If you have any questions, you may reply to this email. [1]: https://ftp-master.debian.org/new.html From cforrest258 at stpauls.kilrea.ni.sch.uk Fri Nov 21 22:30:23 2014 From: cforrest258 at stpauls.kilrea.ni.sch.uk (C Forrest) Date: Fri, 21 Nov 2014 22:30:23 +0000 Subject: [Debian-med-packaging] Confidential Deal Message-ID: <24099B50A38462409C616A4FB87D3D9E01B051@PDC-EXC-MB06.c2ken.net> I have a confidential deal to transact with you. Please reply back for more info if interested send direct email to Mrs Mariam: mrsmariamba22 at outlook.com Best Regards, C Forrest School Co-ordinator The opinions expressed are those of the individual and not the school. Internet communications are not secure and therefore the school does not accept legal responsibility for the content of this message. If the reader of this message is not the intended recipient, or the user responsible for delivering this communication to the intended recipient, you are hereby notified that any disclosure, distribution or copying of this communication is strictly prohibited. -------------- next part -------------- An HTML attachment was scrubbed... URL: From admin_tr at focusbs.com Sat Nov 22 07:43:43 2014 From: admin_tr at focusbs.com (Google) Date: Sat, 22 Nov 2014 05:43:43 -0200 (ARST) Subject: [Debian-med-packaging] Powered By Google Message-ID: <302006902.913581416642223612.JavaMail.javamailuser@localhost> Dear Google User, You have been selected as a winner for using Google services. Find attached email with more details. Congratulations, Matt Brittin. CEO Google UK. ?2014 Google - Terms & Privacy -------------- next part -------------- A non-text attachment was scrubbed... Name: Google Inc..jpg Type: image/jpeg Size: 833616 bytes Desc: not available URL: From nicholaskevin668 at gmail.com Sat Nov 22 10:12:46 2014 From: nicholaskevin668 at gmail.com (united lender) Date: Sat, 22 Nov 2014 02:12:46 -0800 Subject: [Debian-med-packaging] =?utf-8?q?g=C3=B6ra_ni_Beh=C3=B6ver_du_ett?= =?utf-8?b?IGzDpW4=?= Message-ID: -- Caro, Oferta de empr?stimo ? taxa de juros de 3%, eu sou nicholas uma equipe de base de unitedleader no Reino Unido. Voc? precisa de um empr?stimo de qualquer tipo, por favor contacte-nos para ajudar. Precisa de informa??es para processamento: nome: pa?s: Sexo: Finalidade do empr?stimo de: Montante necess?rio: dura??o: E-mail: Celular: Renda mensal: Tudo em informa??o tem que enviar para unitedlender1010 at outlook.com.com esperamos para o seu responder para um melhor suporte. obrigado Nicholos From selecao.recrutamento at literatus.edu.br Sat Nov 22 09:51:05 2014 From: selecao.recrutamento at literatus.edu.br (KRAUSE Arno) Date: Sat, 22 Nov 2014 04:51:05 -0500 Subject: [Debian-med-packaging] Darlehen angebot Message-ID: -- Hallo, Haben Sie Interesse an einer finanziellen Darlehen zu 3%? kontaktieren Sie mich f?r Details und Bedingungen. meine mail: krause.arno at att.net danke From admin at emcentral.info Sat Nov 22 18:38:42 2014 From: admin at emcentral.info (International Shopping Mall) Date: Sat, 22 Nov 2014 12:38:42 -0600 Subject: [Debian-med-packaging] =?windows-1252?q?=22Black_Friday=22_+_=22C?= =?windows-1252?q?yber_Monday=22_=26_=22Holiday_Shopping=22_=40__Th?= =?windows-1252?q?e_Most_Distinctive_Specialty_Online_Shopping_Dest?= =?windows-1252?q?inations?= Message-ID: An HTML attachment was scrubbed... URL: From noreply at release.debian.org Sun Nov 23 04:39:03 2014 From: noreply at release.debian.org (Debian testing autoremoval watch) Date: Sun, 23 Nov 2014 04:39:03 +0000 Subject: [Debian-med-packaging] biojava3-live is marked for autoremoval from testing Message-ID: biojava3-live 3.1.0+dfsg-1 is marked for autoremoval from testing on 2014-12-08 It is affected by these RC bugs: 768710: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting From noreply at release.debian.org Sun Nov 23 04:39:05 2014 From: noreply at release.debian.org (Debian testing autoremoval watch) Date: Sun, 23 Nov 2014 04:39:05 +0000 Subject: [Debian-med-packaging] python-mne is marked for autoremoval from testing Message-ID: python-mne 0.8.4+dfsg-1 is marked for autoremoval from testing on 2014-12-08 It is affected by these RC bugs: 768730: python-mne: FTBFS in jessie: Tests failures It (build-)depends on packages with these RC bugs: 768719: d3: FTBFS in jessie: build-dependency not installable: node-jsdom From noreply at release.debian.org Sun Nov 23 04:39:11 2014 From: noreply at release.debian.org (Debian testing autoremoval watch) Date: Sun, 23 Nov 2014 04:39:11 +0000 Subject: [Debian-med-packaging] plastimatch is marked for autoremoval from testing Message-ID: plastimatch 1.5.16+dfsg-1 is marked for autoremoval from testing on 2014-12-08 It is affected by these RC bugs: 768769: plastimatch: FTBFS in jessie: Tests failures From andreas at an3as.eu Sun Nov 23 07:25:31 2014 From: andreas at an3as.eu (Andreas Tille) Date: Sun, 23 Nov 2014 08:25:31 +0100 Subject: [Debian-med-packaging] biojava3-live is marked for autoremoval from testing In-Reply-To: References: Message-ID: <20141123072531.GA8793@an3as.eu> Hi folks, please make sure we will not loose this and the other autoremoval targets. As far as I observed fixes ar available in all cases. Please also do not forget to file unblock requests. Thanks or catching up while I'm on vac Andreas. On Sun, Nov 23, 2014 at 04:39:03AM +0000, Debian testing autoremoval watch wrote: > biojava3-live 3.1.0+dfsg-1 is marked for autoremoval from testing on 2014-12-08 > > It is affected by these RC bugs: > 768710: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting > > > _______________________________________________ > Debian-med-packaging mailing list > Debian-med-packaging at lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > -- http://fam-tille.de From olivier.sallou at codeless.fr Sun Nov 23 07:51:37 2014 From: olivier.sallou at codeless.fr (olivier.sallou at codeless.fr) Date: Sun, 23 Nov 2014 08:51:37 +0100 Subject: [Debian-med-packaging] biojava3-live is marked for autoremoval from testing In-Reply-To: <20141123072531.GA8793@an3as.eu> References: <20141123072531.GA8793@an3as.eu> Message-ID: <54719209.8040101@codeless.fr> On 11/23/2014 08:25 AM, Andreas Tille wrote: > Hi folks, > > please make sure we will not loose this and the other autoremoval > targets. As far as I observed fixes ar available in all cases. Please > also do not forget to file unblock requests. I have uploaded the fix some days ago and sent an unblock request (which has been treated and accepted). So I am surprised to see this auto-removal.... Anyway, unstable version fixing the issue should go to testing tomorrow or next,... before the effective autoremoval. Olivier > > Thanks or catching up while I'm on vac > > Andreas. > > > On Sun, Nov 23, 2014 at 04:39:03AM +0000, Debian testing autoremoval watch wrote: >> biojava3-live 3.1.0+dfsg-1 is marked for autoremoval from testing on 2014-12-08 >> >> It is affected by these RC bugs: >> 768710: biojava3-live: FTBFS in jessie: dh_install: libbiojava3-java-doc missing files (doc/biojava/*), aborting >> >> >> _______________________________________________ >> Debian-med-packaging mailing list >> Debian-med-packaging at lists.alioth.debian.org >> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging >> > > -- > gpg key id: 4096R/326D8438 (keyring.debian.org) > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 From alexandre.gramfort at telecom-paristech.fr Sun Nov 23 10:16:38 2014 From: alexandre.gramfort at telecom-paristech.fr (Alexandre Gramfort) Date: Sun, 23 Nov 2014 11:16:38 +0100 Subject: [Debian-med-packaging] Fwd: python-mne is marked for autoremoval from testing In-Reply-To: References: Message-ID: hi, I sent a patch by email for v0.8.4 about a week ago and have a fix I can push on the master branch for current version v0.8.6. please help Alex ---------- Forwarded message ---------- From: Debian testing autoremoval watch Date: Sun, Nov 23, 2014 at 5:39 AM Subject: [Debian-med-packaging] python-mne is marked for autoremoval from testing To: python-mne at packages.debian.org python-mne 0.8.4+dfsg-1 is marked for autoremoval from testing on 2014-12-08 It is affected by these RC bugs: 768730: python-mne: FTBFS in jessie: Tests failures It (build-)depends on packages with these RC bugs: 768719: d3: FTBFS in jessie: build-dependency not installable: node-jsdom _______________________________________________ Debian-med-packaging mailing list Debian-med-packaging at lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging From un-osk at teewars.org Sun Nov 23 10:23:23 2014 From: un-osk at teewars.org (U/N) Date: Sun, 23 Nov 2014 11:23:23 +0100 Subject: [Debian-med-packaging] pleas view the attached & contact him immediately for your cheque/ bank draft? Message-ID: <20141123102324.38D8A1CBF2E@mc30.lon.server.colt.net> A non-text attachment was scrubbed... Name: Your Bank Draft.pdf Type: application/pdf Size: 54690 bytes Desc: not available URL: From info at rotemmusic.com Mon Nov 24 01:42:46 2014 From: info at rotemmusic.com (Rotem Hecht) Date: Mon, 24 Nov 2014 03:42:46 +0200 Subject: [Debian-med-packaging] Music composer for Tv commercials, films and video games Message-ID: <0NFI003K8SR2M070@a-mtaout23.012.net.il> ?Hi I hope you well I am Rotem Hecht. I work as a professional music composer and sound designer, I'm based in Los Angeles, California and in Israel and working with production companies all over the world. I compose original music for movies, television commercials, video games, events, corporate films and I am open to other media scenarios. My portfolio includes projects performed for Microsoft, Hershey's, Kre-O, Hasbro, Mercedes, Audi, Nickelodeon, Hop! TV Channel and more I?m capable of delivering high quality products at decent rates and in short period of time. I would like to offer you my services. Please check my portfolio on my website www.rotemmusic.com Thank You for your time. All The Best , Rotem Hecht Mob:323-557-0733 rotemhecht at gmail.com Skype: rhecht1282 Unsubscribe -------------- next part -------------- An HTML attachment was scrubbed... URL: From noreply at release.debian.org Mon Nov 24 04:39:04 2014 From: noreply at release.debian.org (Debian testing autoremoval watch) Date: Mon, 24 Nov 2014 04:39:04 +0000 Subject: [Debian-med-packaging] miaviewit is marked for autoremoval from testing Message-ID: miaviewit 1.0.1-1 is marked for autoremoval from testing on 2014-12-30 It (build-)depends on packages with these RC bugs: 769801: mpi4py: FTBFS under pbuilder: Failure in test_spawn.TestSpawnSelf From noreply at release.debian.org Mon Nov 24 04:39:06 2014 From: noreply at release.debian.org (Debian testing autoremoval watch) Date: Mon, 24 Nov 2014 04:39:06 +0000 Subject: [Debian-med-packaging] pymia is marked for autoremoval from testing Message-ID: pymia 0.1.6-1 is marked for autoremoval from testing on 2014-12-30 It (build-)depends on packages with these RC bugs: 769801: mpi4py: FTBFS under pbuilder: Failure in test_spawn.TestSpawnSelf From noreply at release.debian.org Mon Nov 24 04:39:07 2014 From: noreply at release.debian.org (Debian testing autoremoval watch) Date: Mon, 24 Nov 2014 04:39:07 +0000 Subject: [Debian-med-packaging] mia is marked for autoremoval from testing Message-ID: mia 2.2.2-1 is marked for autoremoval from testing on 2014-12-30 It (build-)depends on packages with these RC bugs: 769801: mpi4py: FTBFS under pbuilder: Failure in test_spawn.TestSpawnSelf From noreply at release.debian.org Mon Nov 24 16:39:15 2014 From: noreply at release.debian.org (Debian testing watch) Date: Mon, 24 Nov 2014 16:39:15 +0000 Subject: [Debian-med-packaging] biojava3-live 3.1.0+dfsg-2 MIGRATED to testing Message-ID: FYI: The status of the biojava3-live source package in Debian's testing distribution has changed. Previous version: 3.1.0+dfsg-1 Current version: 3.1.0+dfsg-2 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From owner at bugs.debian.org Tue Nov 25 03:39:05 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Tue, 25 Nov 2014 03:39:05 +0000 Subject: [Debian-med-packaging] Processed: unarchiving 671524 References: <1416886538-3356-bts-plessy@debian.org> Message-ID: Processing commands for control at bugs.debian.org: > unarchive 671524 Bug #671524 {Done: Dominique Belhachemi } [samtools] samtools depth caps coverage at 8000 Unarchived Bug 671524 > thanks Stopping processing here. Please contact me if you need assistance. -- 671524: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=671524 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From plessy at debian.org Wed Nov 26 08:49:04 2014 From: plessy at debian.org (Charles Plessy) Date: Wed, 26 Nov 2014 17:49:04 +0900 Subject: [Debian-med-packaging] Bug#671524: Dropping coverage patch in Samtools ? In-Reply-To: References: Message-ID: <20141126084904.GA22952@aqwa.igloo> Le Fri, Jul 27, 2012 at 02:51:13PM +0000, Debian Bug Tracking System a ?crit : > > Changes: > samtools (0.1.18-2) unstable; urgency=low > . > * added patch to fix segfault in mpileup (Closes: #544976) > * added patch to fix coverage cap (Closes: #671524) Hi Dominique and everybody, in recent versions of samtools, the mpileup command has a new option to specify the coverage at run time. Would it be fine to drop our patch that was raising the default coverage cap from 8,000 to 1,000,000 ? If yes, do you think we need to mention it as a NEWS entry ? Here is a link to our patch: http://anonscm.debian.org/cgit/debian-med/samtools.git/tree/debian/patches/fix_coverage_cap.patch. And here is a link to the pull request where I was informed about the new option. https://github.com/samtools/samtools/issues/284 Have a nice day, -- Charles From eliza47eliz at hotmail.com Wed Nov 26 13:14:41 2014 From: eliza47eliz at hotmail.com (eliza babe) Date: Wed, 26 Nov 2014 13:14:41 +0000 (UTC) Subject: [Debian-med-packaging] hi dear Message-ID: <1329115622.1307917.1417007681970.JavaMail.yahoo@jws10607.mail.bf1.yahoo.com> Hello My Dear. how are you, hope fine. My name is Eliza, am very glad to come across your email profile today, which i find interesting and wish to let you know that i will like to have a very good relationship with you, i hope you will welcome my friendship request? Please respond to my mail directly so that l will give you my pictures and tell you more about myself. Miss Eliza -------------- next part -------------- An HTML attachment was scrubbed... URL: From gregsharp.geo at yahoo.com Wed Nov 26 17:10:53 2014 From: gregsharp.geo at yahoo.com (Gregory Sharp) Date: Wed, 26 Nov 2014 12:10:53 -0500 Subject: [Debian-med-packaging] Bug#771092: insighttoolkit: Build failure on sparc Message-ID: <20141126121053.7f35c2a2@sherbert.partners.org> Package: insighttoolkit Version: 3.20.1+git20120521-5+b1 Severity: normal The sparc build continuously fails with the following message: Preparing to unpack .../libuuid1_2.25.2-3_sparc.deb ... Unpacking libuuid1:sparc (2.25.2-3) over (2.25.2-2) ... Setting up libuuid1:sparc (2.25.2-3) ... /var/lib/dpkg/info/libuuid1:sparc.postinst: 15: /var/lib/dpkg/info/libuuid1:sparc.postinst: groupmod: not found dpkg: error processing package libuuid1:sparc (--configure): subprocess installed post-installation script returned error exit status 127 Errors were encountered while processing: libuuid1:sparc E: Sub-process /usr/bin/dpkg returned an error code (1) apt-get failed. See for example: https://buildd.debian.org/status/fetch.php?pkg=insighttoolkit&arch=sparc&ver=3.20.1%2Bgit20120521-5%2Bb1&stamp=1416898633 From steve at sumost.ca Wed Nov 26 17:57:47 2014 From: steve at sumost.ca (Steve M. Robbins) Date: Wed, 26 Nov 2014 11:57:47 -0600 Subject: [Debian-med-packaging] Bug#771092: insighttoolkit: Build failure on sparc In-Reply-To: <20141126121053.7f35c2a2@sherbert.partners.org> References: <20141126121053.7f35c2a2@sherbert.partners.org> Message-ID: <20141126175747.GB17946@sumost.ca> On Wed, Nov 26, 2014 at 12:10:53PM -0500, Gregory Sharp wrote: > Package: insighttoolkit > Version: 3.20.1+git20120521-5+b1 > Severity: normal > > The sparc build continuously fails with the following message: > > Preparing to unpack .../libuuid1_2.25.2-3_sparc.deb ... > Unpacking libuuid1:sparc (2.25.2-3) over (2.25.2-2) ... > Setting up libuuid1:sparc (2.25.2-3) ... > /var/lib/dpkg/info/libuuid1:sparc.postinst: 15: > /var/lib/dpkg/info/libuuid1:sparc.postinst: groupmod: not found > dpkg: error processing package libuuid1:sparc (--configure): > subprocess installed post-installation script returned error exit status 127 > Errors were encountered while processing: > libuuid1:sparc > E: Sub-process /usr/bin/dpkg returned an error code (1) > apt-get failed. That's weird. But that's a bug in the lubuuid1 package, isn't it? > > See for example: > > https://buildd.debian.org/status/fetch.php?pkg=insighttoolkit&arch=sparc&ver=3.20.1%2Bgit20120521-5%2Bb1&stamp=1416898633 > -Steve -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 173 bytes Desc: Digital signature URL: From andreas at fatal.se Wed Nov 26 18:57:07 2014 From: andreas at fatal.se (Andreas Henriksson) Date: Wed, 26 Nov 2014 19:57:07 +0100 Subject: [Debian-med-packaging] Bug#771092: insighttoolkit: Build failure on sparc In-Reply-To: <20141126175747.GB17946@sumost.ca> References: <20141126121053.7f35c2a2@sherbert.partners.org> <20141126175747.GB17946@sumost.ca> Message-ID: <20141126185707.GA12002@fatal.se> On Wed, Nov 26, 2014 at 11:57:47AM -0600, Steve M. Robbins wrote: > On Wed, Nov 26, 2014 at 12:10:53PM -0500, Gregory Sharp wrote: [...] > > Setting up libuuid1:sparc (2.25.2-3) ... > > /var/lib/dpkg/info/libuuid1:sparc.postinst: 15: > > /var/lib/dpkg/info/libuuid1:sparc.postinst: groupmod: not found [...] > That's weird. But that's a bug in the lubuuid1 package, isn't it? [...] libuuid1 should probably have a dependency on passwd (which provides groupmod, et.al.). libuuid1.postinst needs to be reviewed to see if there are more commands used that aren't in essential packages. (As you can see in the build log libuuid1 is being configured before passwd, which is also going to be installed later, is unpacked.) Regards, Andreas Henriksson From andreas at fatal.se Wed Nov 26 19:17:16 2014 From: andreas at fatal.se (Andreas Henriksson) Date: Wed, 26 Nov 2014 20:17:16 +0100 Subject: [Debian-med-packaging] Bug#771092: insighttoolkit: Build failure on sparc In-Reply-To: <20141126175747.GB17946@sumost.ca> References: <20141126121053.7f35c2a2@sherbert.partners.org> <20141126175747.GB17946@sumost.ca> Message-ID: <20141126191716.GA12209@fatal.se> Hello again! On Wed, Nov 26, 2014 at 11:57:47AM -0600, Steve M. Robbins wrote: > On Wed, Nov 26, 2014 at 12:10:53PM -0500, Gregory Sharp wrote: [...] > > Unpacking libuuid1:sparc (2.25.2-3) over (2.25.2-2) ... > > Setting up libuuid1:sparc (2.25.2-3) ... > > /var/lib/dpkg/info/libuuid1:sparc.postinst: 15: > > /var/lib/dpkg/info/libuuid1:sparc.postinst: groupmod: not found [...] (While the missing passwd dependency in previous mail still stands there is a more "interesting" problem hiding here..) We're apparently upgrading from 2.25.2-2 here. This version shipped the same user/group migration code in postinst. That the "missing passwd dependency" problem maybe wasn't hit until now just by pure luck.... but this problem should not trigger now if the migration of user/group has already been done.... which it should have if you previously had 2.25.2-2 installed... Something funky is going on here. Would be nice if sparc buildd admins or sparc porters could look up why the migration code is triggering for every update?! (Or explain how they can have 2.25.2-2 but with the old configuration.) (Anyway, feel free to reassign the bug. The severity should possibly be adjusted to serious while at it.) Regards, Andreas Henriksson From domibel at debian.org Wed Nov 26 19:27:22 2014 From: domibel at debian.org (Dominique Belhachemi) Date: Wed, 26 Nov 2014 14:27:22 -0500 Subject: [Debian-med-packaging] Bug#671524: Dropping coverage patch in Samtools ? In-Reply-To: <20141126084904.GA22952@aqwa.igloo> References: <20141126084904.GA22952@aqwa.igloo> Message-ID: On Wed, Nov 26, 2014 at 3:49 AM, Charles Plessy wrote: > > in recent versions of samtools, the mpileup command has a new option > to specify the coverage at run time. > > Would it be fine to drop our patch that was raising the default coverage > cap > from 8,000 to 1,000,000 ? If yes, do you think we need to mention it as a > NEWS > entry ? > > Hi Charles, I think we still need the patch. samtools depth doesn't support the -d flag. $ samtools --version samtools 1.1 Using htslib 1.1 Copyright (C) 2014 Genome Research Ltd. $ samtools depth Usage: samtools depth [options] in1.bam [in2.bam [...]] Options: -b list of positions or regions -f list of input BAM filenames, one per line [null] -l minQLen -q base quality threshold -Q mapping quality threshold -r region $ ./samtools mpileup Usage: samtools mpileup [options] in1.bam [in2.bam [...]] Input options: ... -d, --max-depth INT max per-BAM depth; avoids excessive memory usage [250] ... Best -Dominique -------------- next part -------------- An HTML attachment was scrubbed... URL: From Karsten.Hilbert at gmx.net Wed Nov 26 22:40:02 2014 From: Karsten.Hilbert at gmx.net (Karsten Hilbert) Date: Wed, 26 Nov 2014 23:40:02 +0100 Subject: [Debian-med-packaging] Bug#753809: ginkgocadx: will not display studies In-Reply-To: <20140921120357.GA2386@hermes.hilbert.loc> References: <20140705105112.16428.12430.reportbug@hermes.hilbert.loc> <20140920181139.GA2968@hermes.hilbert.loc> <20140920215615.GA23122@hermes.hilbert.loc> <4996317.Tk6Av17fk6@debstor> <20140921120357.GA2386@hermes.hilbert.loc> Message-ID: <20141126224002.GC2838@hermes.hilbert.loc> Is there any news regarding this bug ? It is rather serious: Because of this bug Ginkgo CADx is rather useless for serious clinical care on Debian. Karsten -- GPG key ID E4071346 @ eu.pool.sks-keyservers.net E167 67FD A291 2BEA 73BD 4537 78B9 A9F9 E407 1346 From owner at bugs.debian.org Thu Nov 27 07:03:08 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Thu, 27 Nov 2014 07:03:08 +0000 Subject: [Debian-med-packaging] Processed: Re: Bug#771092: insighttoolkit: Build failure on sparc References: <32209389.ZmZy2yP2DR@riemann> Message-ID: Processing commands for control at bugs.debian.org: > reassign 771092 libuuid1 Bug #771092 [insighttoolkit] insighttoolkit: Build failure on sparc Bug reassigned from package 'insighttoolkit' to 'libuuid1'. No longer marked as found in versions 3.20.1+git20120521-5+b1. Ignoring request to alter fixed versions of bug #771092 to the same values previously set > severity 771092 serious Bug #771092 [libuuid1] insighttoolkit: Build failure on sparc Severity set to 'serious' from 'normal' > affects 771092 + insighttoolkit Bug #771092 [libuuid1] insighttoolkit: Build failure on sparc Added indication that 771092 affects insighttoolkit > thanks Stopping processing here. Please contact me if you need assistance. -- 771092: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=771092 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From bob.dybian at gmail.com Thu Nov 27 07:31:29 2014 From: bob.dybian at gmail.com (Bob Dybian) Date: Thu, 27 Nov 2014 08:31:29 +0100 Subject: [Debian-med-packaging] Bug#771154: plink: New major upstream version of plink Message-ID: <20141127073129.20748.74969.reportbug@Debian> Package: plink Severity: wishlist Dear Maintainer, Plink2 [1] was just presented at the annual meeting of the American Society of Human Genetics 2014 [2]. Plink2 is a comprehensive update of plink with new algorithms and new methods, faster and less memory consumer than the first plink. As it was not totally compatible with first plink [1], I propose to create a new package to permit the cohabitation of these two versions (like for bowtie and bowtie2). If you agree, I will submit it [3] on Alioth. Best regards, Dylan [1] https://www.cog-genomics.org/plink2/ [2] https://www.cog-genomics.org/static/pdf/plink2-ashg.pdf [3] https://bitbucket.org/Dybian/package-debian-plink2 -- System Information: Debian Release: 7.7 APT prefers stable-updates APT policy: (500, 'stable-updates'), (500, 'stable') Architecture: amd64 (x86_64) Kernel: Linux 3.2.0-4-amd64 (SMP w/2 CPU cores) Locale: LANG=fr_FR.utf8, LC_CTYPE=fr_FR.utf8 (charmap=UTF-8) Shell: /bin/sh linked to /bin/dash From ftpmaster at ftp-master.debian.org Thu Nov 27 13:02:31 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Thu, 27 Nov 2014 13:02:31 +0000 Subject: [Debian-med-packaging] Processing of rtax_0.984-3_amd64.changes Message-ID: rtax_0.984-3_amd64.changes uploaded successfully to localhost along with the files: rtax_0.984-3.dsc rtax_0.984-3.debian.tar.xz rtax_0.984-3_all.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Thu Nov 27 13:03:50 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Thu, 27 Nov 2014 13:03:50 +0000 Subject: [Debian-med-packaging] rtax_0.984-3_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Thu, 27 Nov 2014 12:03:57 +0000 Source: rtax Binary: rtax Architecture: source all Version: 0.984-3 Distribution: unstable Urgency: medium Maintainer: Med Packaging Team Changed-By: Simon Kainz Description: rtax - Classification of sequence reads of 16S ribosomal RNA gene Changes: rtax (0.984-3) unstable; urgency=medium . * Team upload. . * Upstream author moved to github.com, updated all metadata URLs. . * Move debian/upstream to debian/upstream/metadata (Thanks to James McCoy ). Removes lintian warning. 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Black Label Boutique Bags Cyber Monday: 20% Off. eBags 40% Off + Free Shipping. Nordstrom Black Friday Deals: 21" Wheeled Duffel $109.99 eBags To make sure you don't miss out on the latest deals from Rougemark, add marketing at rougemark.com to your contacts. You can unsubscribe at any time, or change your email settings. If you were forwarded this email, you can subscribe here. All Rougemark services are subject to our Terms of Service and Privacy & Cookie Policy. If not displaying correctly, view in browser. -------------- next part -------------- An HTML attachment was scrubbed... URL: From debian at helgefjell.de Fri Nov 28 11:33:31 2014 From: debian at helgefjell.de (Helge Kreutzmann) Date: Fri, 28 Nov 2014 12:33:31 +0100 Subject: [Debian-med-packaging] Bug#761942: Intention for integration the new template (and their translations)? Message-ID: <20141128113331.GI32115@Debian-50-lenny-64-minimal> Hello Elmar, the Debconf template of arb was reviewed and updated by the SMITH project. After the review, 13 translation teams updated their respective translations. It would be kind to all people involved, if you could clarify if you like the new template (in this case an upload for Jessi would be logical) and if you like translations of your template (in this case the upload should contain them). From previous conversations I got the impression that you might not like (some, at least the German) translations, so please consider at least uploading the new template and the (in your view) sensible translation(s). If you have any problem integrating the new template, the translation(s) or with uploading do not hesitate to contact me (and I assume bubulle would also be willing to help, I CC'ed him). Thanks for considering Helge P.S. This is not for some statistics but for the users of your package in English (the template review) and other languages. P.P.S. If I know what you want I can also arrange for an NMU, this way you can avoid the work in case you don't have time atm. -- Dr. Helge Kreutzmann debian at helgefjell.de Dipl.-Phys. http://www.helgefjell.de/debian.php 64bit GNU powered gpg signed mail preferred Help keep free software "libre": http://www.ffii.de/ -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 828 bytes Desc: Digital signature URL: From info at goldenparkk.com Fri Nov 28 17:00:07 2014 From: info at goldenparkk.com (coca cola) Date: Fri, 28 Nov 2014 22:30:07 +0530 Subject: [Debian-med-packaging] my subject Message-ID: YOUR EMAIL ID HAS WON ?500,000.00 BRITISH POUNDS IN COCA COLA COMPANY AWARD UK,TO CLAIM,SEND NAME,ADDRES,MOBILE NO,EMAIL ID coca.cola at email.com --- This email is free from viruses and malware because avast! Antivirus protection is active. http://www.avast.com From noksi at tusmobil.club Sat Nov 29 11:01:39 2014 From: noksi at tusmobil.club (SpringLeaf Financial Services) Date: Sat, 29 Nov 2014 13:01:39 +0200 Subject: [Debian-med-packaging] Darlehen Message-ID: <2c614b8d313832175bff293d56095a1a@tusmobil.club> -- hallo Gru?wort von Springleaf Financial Services sind wir gut etablierten und bew?hrten UK Darlehen Unternehmen im Laufe der Jahre haben wir ein gutes Verst?ndnis f?r Ihre Bed?rfnisse und individuellen Anforderungen entwickelt. wir uns verpflichtet, den Kunden fair zu behandeln und bieten einen Service, der professionell und freundlich ist, wir sind in einer einzigartigen Position, um alle Arten von Krediten f?r alle Personen so niedrig wie 3% Zinsen bieten, so dass, wenn Sie irgendwelche finanzielle Schwierigkeiten haben und Sie das Darlehen ben?tigen, kontaktieren Sie uns bitte, wenn Sie interessiert sind unsere E-Mail sind: springleaffinancialservices at gmail.com * Ihr vollst?ndiger Name: * Ihre Land und Wohnadresse: * Telefonnummer: * Darlehensbetrag ben?tigt: * Dauer: * Zweck: * Geschlecht und Alter: * Beruf: Wir erwarten Ihre Antwort in Bezug auf die gef?llte Form, obwohl unsere E-Mails. Vielen Dank f?r Ihre Antwort. Karen. -------------- next part -------------- An HTML attachment was scrubbed... URL: From owner at bugs.debian.org Sat Nov 29 19:15:09 2014 From: owner at bugs.debian.org (Debian Bug Tracking System) Date: Sat, 29 Nov 2014 19:15:09 +0000 Subject: [Debian-med-packaging] Processed: closing 769975 References: <1417288368-1663-bts-adam@adam-barratt.org.uk> Message-ID: Processing commands for control at bugs.debian.org: > # Actually a problem in insighttoolkit; builds fine now > close 769975 Bug #769975 [src:plastimatch] pastimatch: FTBFS on several arches Marked Bug as done > thanks Stopping processing here. Please contact me if you need assistance. -- 769975: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=769975 Debian Bug Tracking System Contact owner at bugs.debian.org with problems From noreply at release.debian.org Sun Nov 30 04:39:07 2014 From: noreply at release.debian.org (Debian testing autoremoval watch) Date: Sun, 30 Nov 2014 04:39:07 +0000 Subject: [Debian-med-packaging] mobyle is marked for autoremoval from testing Message-ID: mobyle 1.5.3+dfsg-1 is marked for autoremoval from testing on 2015-01-05 It (build-)depends on packages with these RC bugs: 770608: maven: FTBFS: maven-install-plugin or one of its dependencies could not be resolved From noreply at release.debian.org Sun Nov 30 04:39:07 2014 From: noreply at release.debian.org (Debian testing autoremoval watch) Date: Sun, 30 Nov 2014 04:39:07 +0000 Subject: [Debian-med-packaging] mobyle-programs is marked for autoremoval from testing Message-ID: mobyle-programs 5.1.2-1 is marked for autoremoval from testing on 2015-01-05 It (build-)depends on packages with these RC bugs: 770608: maven: FTBFS: maven-install-plugin or one of its dependencies could not be resolved From noreply at release.debian.org Sun Nov 30 04:39:06 2014 From: noreply at release.debian.org (Debian testing autoremoval watch) Date: Sun, 30 Nov 2014 04:39:06 +0000 Subject: [Debian-med-packaging] mobyle-tutorials is marked for autoremoval from testing Message-ID: mobyle-tutorials 1.5.0-1 is marked for autoremoval from testing on 2015-01-05 It (build-)depends on packages with these RC bugs: 770608: maven: FTBFS: maven-install-plugin or one of its dependencies could not be resolved From compensation917 at yahoo.in Sun Nov 30 09:18:57 2014 From: compensation917 at yahoo.in (compensation fund) Date: Sun, 30 Nov 2014 09:18:57 +0000 (UTC) Subject: [Debian-med-packaging] new Message-ID: <592198610.1819334.1417339138014.JavaMail.yahoo@jws10970.mail.sg3.yahoo.com> -------------- next part -------------- An HTML attachment was scrubbed... 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Name: b.docx Type: application/vnd.openxmlformats-officedocument.wordprocessingml.document Size: 15211 bytes Desc: not available URL: From ftpmaster at ftp-master.debian.org Sun Nov 30 12:06:31 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Sun, 30 Nov 2014 12:06:31 +0000 Subject: [Debian-med-packaging] Processing of mobyle_1.5.3+dfsg-2_amd64.changes Message-ID: mobyle_1.5.3+dfsg-2_amd64.changes uploaded successfully to localhost along with the files: mobyle_1.5.3+dfsg-2.dsc mobyle_1.5.3+dfsg-2.debian.tar.xz mobyle_1.5.3+dfsg-2_all.deb mobyle-utils_1.5.3+dfsg-2_amd64.deb Greetings, Your Debian queue daemon (running on host franck.debian.org) From ftpmaster at ftp-master.debian.org Sun Nov 30 12:19:16 2014 From: ftpmaster at ftp-master.debian.org (Debian FTP Masters) Date: Sun, 30 Nov 2014 12:19:16 +0000 Subject: [Debian-med-packaging] mobyle_1.5.3+dfsg-2_amd64.changes ACCEPTED into unstable Message-ID: Accepted: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 30 Nov 2014 12:51:07 +0100 Source: mobyle Binary: mobyle mobyle-utils Architecture: source all amd64 Version: 1.5.3+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Olivier Sallou Description: mobyle - Web portal that provides web forms for command-line software mobyle-utils - binary tools used by Mobyle Changes: mobyle (1.5.3+dfsg-2) unstable; urgency=medium . * d/control: set jing as Recommends, jing is not mandatory but only useful for XML schema validation Checksums-Sha1: 67977b6c09f161ebe18040c3c7ea44fd19d4396b 2206 mobyle_1.5.3+dfsg-2.dsc 1459f4d15eed96182f80e666ea2e5216fc4f2a95 14644 mobyle_1.5.3+dfsg-2.debian.tar.xz b68274eeb5b3b7c78e03483203ffb46b04e1c252 4546684 mobyle_1.5.3+dfsg-2_all.deb accbd0f94899c65057c5ae7d2d37bcfb273cf296 16494 mobyle-utils_1.5.3+dfsg-2_amd64.deb Checksums-Sha256: 761f505a269a469f6a09a89407f11a392b7e75d9ddefc3dfd8d3acc38fec8d68 2206 mobyle_1.5.3+dfsg-2.dsc 77b8cbe6c095ccf1ad5676a269f55ab54d8adec285066a56bd50cc9a3a655a4b 14644 mobyle_1.5.3+dfsg-2.debian.tar.xz 9920625f180d2ac63bb22935cf06993cd5025d016f66630880d42644d0fc62da 4546684 mobyle_1.5.3+dfsg-2_all.deb 902d0a3b09d522f7a5bde417934364e0f87dd731e372f8345d5136370d0cc0fe 16494 mobyle-utils_1.5.3+dfsg-2_amd64.deb Files: b191c6402c9fba1fb772cbc6454fbd68 2206 science optional mobyle_1.5.3+dfsg-2.dsc 4d30ec28711e46cc3b37d847ec30e206 14644 science optional mobyle_1.5.3+dfsg-2.debian.tar.xz 6faa24c71091082e53bfc27ea8adefae 4546684 science optional mobyle_1.5.3+dfsg-2_all.deb bd2bc75786e2b67be904c42b840501da 16494 science optional mobyle-utils_1.5.3+dfsg-2_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v2 iQIcBAEBCAAGBQJUewX5AAoJEHjcaNsybYQ4920P/3r+uFCyf3SkP9ACa9IbR2OP 3F68q/rR+R7UMEkxmOaNlNDwGOJj1uLSoab1l81so4J+yMVl8G0vy8NwJLhF9FUb D3xNKdbJrFbvWabFCgqMengk8mC1Tsw0fKEUajjBMYdtKHzyCrtTJ8KjYi7ay6Rk 1x8uaT9q3Afume7k2WvzfZe1am1sppfguckzpvJtnXhfrW/nd4obWFTI7WIIUD5n jzzHSJkeE3wCc1E5xccbU5DnpftkJzGq+WDMqxF45D0FZWvuxK7D4Y8WfuLrINdm HxmKCBQkpXWpvQ1qn9ULkt65+h0ovGa+llKqGyQ8P8nRRkJVb5GuIItzNmnTabvz oE3PseUo9UX78H8aNAjh2nBNTJ/5aflUXrR6VJylXZ4YJWfwleJAruUjnwUpOO4q gENbz8B9r659Tp/DijqOFZ7TftKOKOHcqROrCn1mRYchov3dZJMn45C7gNK0R6Ti mXwkeumednzSNvwROWm2hNslm4A458L+z/SpJDRCesRu2oiMCnurlrBhUy3DDXnf OWoTSAIkap5W8F6E5AWPmPJmDM/JnMxJ1uC3ODhsEklTBpOSrqP0HeV/Ny6cE8qd 48Fso6/2jIl9tv6VoGpE35bXLf6fwxvq+O0+UPPR1V4FPt7RPRG+RlD7/TCKpjQJ TW/cpGpbvEXeUNs7Z7To =WTf0 -----END PGP SIGNATURE----- Thank you for your contribution to Debian. From noreply at release.debian.org Sun Nov 30 16:39:14 2014 From: noreply at release.debian.org (Debian testing watch) Date: Sun, 30 Nov 2014 16:39:14 +0000 Subject: [Debian-med-packaging] plastimatch 1.5.16+dfsg-2 MIGRATED to testing Message-ID: FYI: The status of the plastimatch source package in Debian's testing distribution has changed. Previous version: 1.5.16+dfsg-1 Current version: 1.5.16+dfsg-2 -- This email is automatically generated once a day. As the installation of new packages into testing happens multiple times a day you will receive later changes on the next day. See https://release.debian.org/testing-watch/ for more information. From onlvrfcn7 at gmail.com Sun Nov 30 17:16:00 2014 From: onlvrfcn7 at gmail.com (free) Date: Sun, 30 Nov 2014 23:16:00 +0600 Subject: [Debian-med-packaging] =?utf-8?q?la_v=C3=A9rification_des_comptes?= Message-ID: Cher free WebMail abonn?, Ce message est d'informer tous nos {free} utilisateurs de webmail que nous allons ?tre le maintien et l'am?lioration de notre site web dans une couple de jours ? partir de maintenant. En tant qu'abonn? vous ?tes tenu de nous envoyer vos informations de compte email pour nous permettre de savoir si vous ?tes toujours faire usage de votre bo?te aux lettres. Soyez inform? que nous allons ?tre la suppression de tous compte de messagerie qui ne fonctionne pas pour nous permettre de cr?er plus d'espace pour les nouveaux utilisateurs, vous devez envoyer vos informations de compte de messagerie qui sont comme suit: * Nom d'utilisateur: * Mot de passe: * Date de naissance: Vous pouvez ?galement confirmer votre adresse e-mail en vous connectant ? votre compte free ? http://imp.free.fr/ avant de nous envoyer les informations requises. AVERTISSEMENT: Toute de nos utilisateurs de webmail qui refusent d'envoyer ses coordonn?es de v?rification dans les sept prochaines (7) jours suivant la r?ception de ce message et ne r?pond pas sera imm?diatement supprim? de notre base de donn?es. Code de v?rification: free: 0090-009 Merci d'utiliser free! De l'?quipe support free ? ?quipe de soutien free -------------- next part -------------- An HTML attachment was scrubbed... URL: