[Debian-med-packaging] Bug#765285: closed by Olivier Sallou <osallou at debian.org> (Bug#765285: fixed in mapsembler2 2.2.3+dfsg-1)

[Sebastian Ramacher]

Control: reopen -1

On 2014-10-15 06:06:20, Debian Bug Tracking System wrote:
>  mapsembler2 (2.2.3+dfsg-1) unstable; urgency=medium
>  .
>    * New upstream release
>    * Fix some compilation issues
>    * Fix FTBS on non x86 (Closes: #765285).

Unfortunately it still fails on mips, mipsel and powerpc with
| [ 97%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o
| Linking CXX executable ../bin/dbgh5
| ../lib/libgatbcore.a(Storage.cpp.o): In function `gatb::core::tools::storage::impl::BagHDF5<gatb::core::tools::math::NativeInt8>::insert(gatb::core::tools::math::NativeInt8 const*, unsigned int)':
| /«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: undefined reference to `__sync_fetch_and_add_8'
| ../lib/libgatbcore.a(BranchingAlgorithm.cpp.o): In function `gatb::core::tools::storage::impl::BagHDF5<gatb::core::kmer::impl::Kmer<64u>::Count>::insert(gatb::core::kmer::impl::Kmer<64u>::Count const*, unsigned int)':
| /«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: undefined reference to `__sync_fetch_and_add_8'
| ../lib/libgatbcore.a(BranchingAlgorithm.cpp.o): In function `gatb::core::tools::storage::impl::BagHDF5<gatb::core::kmer::impl::Kmer<96u>::Count>::insert(gatb::core::kmer::impl::Kmer<96u>::Count const*, unsigned int)':
| /«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: undefined reference to `__sync_fetch_and_add_8'
| ../lib/libgatbcore.a(BranchingAlgorithm.cpp.o): In function `gatb::core::tools::storage::impl::BagHDF5<gatb::core::kmer::impl::Kmer<128u>::Count>::insert(gatb::core::kmer::impl::Kmer<128u>::Count const*, unsigned int)':
| /«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: undefined reference to `__sync_fetch_and_add_8'
| ../lib/libgatbcore.a(BranchingAlgorithm.cpp.o): In function `gatb::core::tools::storage::impl::BagHDF5<gatb::core::kmer::impl::Kmer<32u>::Count>::insert(gatb::core::kmer::impl::Kmer<32u>::Count const*, unsigned int)':
| /«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: undefined reference to `__sync_fetch_and_add_8'
| ../lib/libgatbcore.a(DebloomAlgorithm.cpp.o):/«BUILDDIR»/mapsembler2-2.2.3+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:102: more undefined references to `__sync_fetch_and_add_8' follow
| collect2: error: ld returned 1 exit status

Cheers
-- 
Sebastian Ramacher
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