[Debian-med-packaging] Bug#793514: Fwd: Staden authoren ??? [Re: Bug#793514: FTBFS: conflicting types for append_int]

[Andrew Whitwham]

Hi Sascha,

I see what has happened.  A new version of iolib was released without 
releasing a compatible version of the Staden Package.  The code is 
ready, it just needs releasing.

I'll see what I can do.

Thanks,

Andrew

On 07/08/15 16:35, Sascha Steinbiss wrote:
> Hi Andrew,
>
> many thanks for your quick reply and for your willingness to look into
> the issue.
>
> Best regards,
> Sascha
>
> On 07/08/2015 16:23, Andrew Whitwham wrote:
>> Hi Sascha,
>>
>> Thanks for letting us know.  I will take a look but it may be a few days
>> before I can do anything about it.
>>
>> Regards,
>>
>> Andrew
>>
>>
>> On 07/08/15 15:26, Sascha Steinbiss wrote:
>>> Dear James and Andrew,
>>>
>>> I am writing to kindly bring the following Staden build issue to your
>>> attention. The Debian automated build system is currently unable to
>>> build the code from source due to multiple declarations of identically
>>> named functions with different parameter and return types.
>>> We were wondering if you could help out there -- many thanks in advance!
>>>
>>> Best wishes
>>> Sascha
>>>
>>> -- Forwarded email below --
>>>
>>> Date: Sat, 1 Aug 2015 07:28:32 +0200
>>> From: Andreas Tille <andreas at fam-tille.de>
>>> To: "Chris West (Faux)" <solo-debianbugs at goeswhere.com>,
>>> 793514 at bugs.debian.org, James Bonfield <jkb at sanger.ac.uk>
>>> Cc: Tim Booth <tbooth at ceh.ac.uk>
>>> Subject: Re: Bug#793514: FTBFS: conflicting types for append_int
>>>
>>> Hi Staden developers,
>>>
>>> as you can see in this Debian bug report the current staden release is
>>> in conflict with the latest releases of staden-io-lib.  Both dafine the
>>> same function but with different code (not only the header is
>>> different).
>>>
>>> Any help is welcome
>>>
>>>       Andreas.
>>>
>>> On Fri, Jul 24, 2015 at 07:14:29PM +0000, Chris West (Faux) wrote:
>>>> Source: staden
>>>> Version: 2.0.0+b10-1.1
>>>> Severity: serious
>>>> Tags: sid
>>>> Justification: fails to build from source
>>>> User: reproducible-builds at lists.alioth.debian.org
>>>> Usertags: ftbfs
>>>>
>>>> Dear Maintainer,
>>>>
>>>> The package fails to build:
>>>>
>>>> sam_index.c:321:14: error: conflicting types for ‘append_int’
>>>>    static char *append_int(char *cp, int i) {
>>>>                 ^
>>>> In file included from /usr/include/io_lib/scram.h:52:0,
>>>>                    from sam_pileup.h:4,
>>>>                    from sam_index.c:17:
>>>> /usr/include/io_lib/bam.h:755:16: note: previous declaration of
>>>> ‘append_int’ was here
>>>>    unsigned char *append_int(unsigned char *cp, int32_t i);
>>>>                   ^
>>>> /staden-2.0.0+b10/./gap5/../global.mk:388: recipe for target
>>>> 'sam_index.o' failed
>>>> make[2]: *** [sam_index.o] Error 1
>>>> make[2]: Leaving directory '/staden-2.0.0+b10/gap5'
>>>>
>>>>
>>>> Full build log:
>>>> https://reproducible.debian.net/rb-pkg/unstable/amd64/staden.html
>>>>
>>>> -- System Information:
>>>> Debian Release: stretch/sid
>>>>     APT prefers unstable
>>>>     APT policy: (500, 'unstable')
>>>> Architecture: amd64 (x86_64)
>>>>
>>>> Kernel: Linux 3.19.0-23-generic (SMP w/8 CPU cores)
>>>> Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8)
>>>> Shell: /bin/sh linked to /bin/dash
>>>> Init: systemd (via /run/systemd/system)
>>>>
>>>> _______________________________________________
>>>> Debian-med-packaging mailing list
>>>> Debian-med-packaging at lists.alioth.debian.org
>>>> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
>>>>
>>>
>>
>



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