[Debian-med-packaging] Help getting missing classes found by prottest

[Andreas Tille]

Hi again,

I simply removed -init-macrodef-copylibs from the build target which was
probably a bit to dumb as a solution.  Now the classes ar built but it
seems copylibs is the part of netbeans that creates the JAR.  I'm sure
some Java programmer will give a hint how to replace it for the Debian
package ...

Thanks a lot

       Andreas.

On Sat, Oct 17, 2015 at 12:21:03AM +0200, Andreas Tille wrote:
> Hi
> 
> On Fri, Oct 16, 2015 at 11:32:18PM +0200, Emmanuel Bourg wrote:
> > Le 16/10/2015 23:26, Markus Koschany a écrit :
> > 
> > > P.S.: Please note that the swing-worker.jar is still imported from the
> > > libs directory. I don't know if this one is already packaged for Debian.
> > 
> > I don't think we have it, but SwingWorker is a standard class of the JDK
> > since Java 6, it should be easy to adapt the code to use it.
> 
> Thanks to Markus's patch I was able to build the package.  However,
> after now removing all *.jar files I have a new problem:
> 
> ...
> -do-jar-with-libraries:
>     
> BUILD FAILED
> /build/prottest-3.4+dfsg/buildconf/build-impl.xml:595: The following error occurred while executing this line:
> /build/prottest-3.4+dfsg/buildconf/build-impl.xml:429: taskdef class org.netbeans.modules.java.j2seproject.copylibstask.CopyLibs cannot be found
>  using the classloader AntClassLoader[]
> 
> Total time: 4 seconds
> dh_auto_build: ant returned exit code 1
> ...
> 
> 
> How can I resolve this netbeans dependency?
> 
> Moreover I have no idea how to tweak
> 
>     src/main/resources/runProtTestHPC.sh
> 
> which I copied to debian/bin to properly use mpj.  It is referencing a
> mpjrun.sh script that was part of the (now also removed code copy of mpj)
> which in turn uses a starter.jar that is not part of the libmpj-java
> package:
> 
>     java -jar $MPJ_HOME/lib/starter.jar "$@"
> 
> I wonder how to easily use prottest mpi features (once the build problem
> might be solved).
> 
> Thanks for any help
> 
>     Andreas.
> 
> -- 
> http://fam-tille.de
> 
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-- 
http://fam-tille.de
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