[Debian-med-packaging] ITP: spades -- genome assembler for single-cell and isolates data sets

Sascha Steinbiss sascha at steinbiss.name
Sun Feb 7 08:52:42 UTC 2016


Package: wnpp
Severity: wishlist
Owner: Sascha Steinbiss <satta at tetrinetsucht.de>

* Package name    : spades
 Version         : 3.6.2 
 Upstream Author : Saint-Petersburg Academic University <spades.support at bioinf.spbau.ru>
* URL             : http://spades.bioinf.spbau.ru
* License         : GPL-2
 Programming Lang: C++, Python
 Description     : genome assembler for single-cell and isolates data sets

The SPAdes – St. Petersburg genome assembler is intended for both
standard isolates and single-cell MDA bacteria assemblies. It works
with Illumina or IonTorrent reads and is capable of providing hybrid
assemblies using PacBio and Sanger reads. You can also provide
additional contigs that will be used as long reads.

This package will be maintained by the Debian Med Packaging Team.



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