[Debian-med-packaging] Bug#906932: kmer FTBFS in clean unstable chroot

Lumin cdluminate at gmail.com
Wed Aug 22 14:58:15 BST 2018


Package: kmer
Version: 0~20150903+r2013-4
Severity: serious
Justification: FTBFS in clean chroot

I cannot build kmer under both Debian experimental,
and the debian unstable docker.

```                                                                         ^
In file included from atac-driver/alignOverlap/overlap.H:45,
                 from atac-driver/alignOverlap/overlap-sort.C:19:
atac-driver/alignOverlap/overlap-stats.H:64:29: warning: invalid suffix on literal; C++11 requires a space between literal and string macro [-Wliteral-suffix]
       fprintf(out, uint32FMT" "uint32FMT"\n", i, hist[i]);
                             ^
ln -f /root/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process.C /root/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process1.C
ln -f /root/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process.C /root/kmer-0~20150903+r2013/atac-driver/alignOverlap/overlap-process2.C
make[2]: *** No rule to make target '/root/kmer-0~20150903+r2013/atac-driver/libatac/libatac.a', needed by 'atac-driver/alignOverlap/overlap'.  Stop.
make[2]: *** Waiting for unfinished jobs....
make[2]: Leaving directory '/root/kmer-0~20150903+r2013'
make[1]: *** [debian/rules:27: override_dh_auto_build] Error 2
make[1]: Leaving directory '/root/kmer-0~20150903+r2013'
make: *** [debian/rules:21: build] Error 2
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
```



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