[Debian-med-packaging] Bug#947423: kallisto ftbfs with htslib 1.10.2

[Paul Gevers]

Source: kallisto
Version: 0.46.1+dfsg-1
Severity: serious
Justification: ftbfs
Tags: ftbfs sid bullseye

Dear maintainer,

Your package is part of the htslib 1.10.2 transition. I tried to binNMU
your package but it fails to build from source. Please have a look.

Paul

https://buildd.debian.org/status/package.php?p=kallisto

Tail of log for kallisto on amd64:

   86 | } kstring_t;
      |   ^~~~~~~~~
[ 66%] Building CXX object src/CMakeFiles/kallisto_core.dir/common.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++
-I/<<PKGBUILDDIR>>/src -I/usr/include/hdf5/serial  -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -std=c++11 -o
CMakeFiles/kallisto_core.dir/common.cpp.o -c /<<PKGBUILDDIR>>/src/common.cpp
[ 71%] Building CXX object src/CMakeFiles/kallisto_core.dir/h5utils.cpp.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++
-I/<<PKGBUILDDIR>>/src -I/usr/include/hdf5/serial  -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -std=c++11 -o
CMakeFiles/kallisto_core.dir/h5utils.cpp.o -c
/<<PKGBUILDDIR>>/src/h5utils.cpp
make[3]: *** [src/CMakeFiles/kallisto_core.dir/build.make:209:
src/CMakeFiles/kallisto_core.dir/ProcessReads.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:131:
src/CMakeFiles/kallisto_core.dir/all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[1]: *** [Makefile:133: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_build: cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install
--strip-program=true" returned exit code 2
make: *** [debian/rules:14: build-arch] Error 255

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