[Debian-med-packaging] Bug#1043772: andi: Fails to build source after successful build

[Lucas Nussbaum]

Source: andi
Version: 0.14-2
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> --------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package andi
> dpkg-buildpackage: info: source version 0.14-2
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Nilesh Patra <nilesh at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean
>    dh_auto_clean
> 	make -j8 distclean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> Making distclean in .
> make[2]: Entering directory '/<<PKGBUILDDIR>>'
> test -z "test/nan.sh.log test/low_homo.sh.log test/test_esa.log test/test_seq.log test/test_extra.sh.log test/test_random.sh.log test/test_join.sh.log test/test_process.log" || rm -f test/nan.sh.log test/low_homo.sh.log test/test_esa.log test/test_seq.log test/test_extra.sh.log test/test_random.sh.log test/test_join.sh.log test/test_process.log
> test -z "" || rm -f 
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f 
> test -z "test/nan.sh.trs test/low_homo.sh.trs test/test_esa.trs test/test_seq.trs test/test_extra.sh.trs test/test_random.sh.trs test/test_join.sh.trs test/test_process.trs" || rm -f test/nan.sh.trs test/low_homo.sh.trs test/test_esa.trs test/test_seq.trs test/test_extra.sh.trs test/test_random.sh.trs test/test_join.sh.trs test/test_process.trs
> rm -f cscope.out cscope.in.out cscope.po.out cscope.files
> test -z "test-suite.log" || rm -f test-suite.log
> make[2]: Leaving directory '/<<PKGBUILDDIR>>'
> Making distclean in libs
> make[2]: Entering directory '/<<PKGBUILDDIR>>/libs'
> test -z "libpfasta.a" || rm -f libpfasta.a
> rm -f *.o
> rm -f *.tab.c
> test -z "" || rm -f 
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f 
> rm -f ./.deps/libpfasta_a-pfasta.Po
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/libs'
> Making distclean in opt
> make[2]: Entering directory '/<<PKGBUILDDIR>>/opt'
> test -z "libcompat.a" || rm -f libcompat.a
> rm -f *.o
> rm -f *.tab.c
> test -z "" || rm -f 
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f 
> rm -f ./.deps/reallocarray.Po
> rm -f ./.deps/strchrnul.Po
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/opt'
> Making distclean in src
> make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
> test -z "andi" || rm -f andi
> rm -f *.o
> rm -f *.tab.c
> test -z "" || rm -f 
> rm -f config.h stamp-h1
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f 
> rm -f ./.deps/andi-andi.Po
> rm -f ./.deps/andi-esa.Po
> rm -f ./.deps/andi-io.Po
> rm -f ./.deps/andi-model.Po
> rm -f ./.deps/andi-process.Po
> rm -f ./.deps/andi-sequence.Po
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
> Making distclean in docs
> make[2]: Entering directory '/<<PKGBUILDDIR>>/docs'
> test -z "andi.1" || rm -f andi.1
> test . = "." || test -z "" || rm -f 
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/docs'
> Making distclean in test
> make[2]: Entering directory '/<<PKGBUILDDIR>>/test'
> test -z "test_esa test_seq test_fasta test_process" || rm -f test_esa test_seq test_fasta test_process
> rm -f *.o
> rm -f *.tab.c
> test -z "" || rm -f 
> rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
> test . = "." || test -z "" || rm -f 
> rm -f ./.deps/test_esa-esa.Po
> rm -f ./.deps/test_esa-sequence.Po
> rm -f ./.deps/test_esa-test_esa.Po
> rm -f ./.deps/test_fasta.Po
> rm -f ./.deps/test_process-esa.Po
> rm -f ./.deps/test_process-io.Po
> rm -f ./.deps/test_process-model.Po
> rm -f ./.deps/test_process-process.Po
> rm -f ./.deps/test_process-sequence.Po
> rm -f ./.deps/test_process-test_process.Po
> rm -f ./.deps/test_seq-sequence.Po
> rm -f ./.deps/test_seq-test_seq.Po
> rm -f Makefile
> make[2]: Leaving directory '/<<PKGBUILDDIR>>/test'
> rm -f config.status config.cache config.log configure.lineno config.status.lineno
> rm -f Makefile
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
>    dh_autoreconf_clean
>    dh_clean
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building andi using existing ./andi_0.14.orig.tar.gz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: info: local changes detected, the modified files are:
>  andi-0.14/ChangeLog
> dpkg-source: error: aborting due to unexpected upstream changes, see /tmp/andi_0.14-2.diff.lbh7pu
> dpkg-source: info: Hint: make sure the version in debian/changelog matches the unpacked source tree
> dpkg-source: info: you can integrate the local changes with dpkg-source --commit
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 2
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/andi_0.14-2_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.