[Debian-med-packaging] Bug#1043949: bmtk: Fails to build source after successful build

[Lucas Nussbaum]

Source: bmtk
Version: 1.0.6+ds-1
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> ------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package bmtk
> dpkg-buildpackage: info: source version 1.0.6+ds-1
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean --with python3,sphinxdoc --buildsystem=pybuild
>    dh_auto_clean -O--buildsystem=pybuild
> I: pybuild base:275: python3.11 setup.py clean 
> running clean
> removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build' (and everything under it)
> 'build/bdist.linux-x86_64' does not exist -- can't clean it
> 'build/scripts-3.11' does not exist -- can't clean it
>    dh_autoreconf_clean -O--buildsystem=pybuild
>    dh_clean -O--buildsystem=pybuild
>  dpkg-source -b .
> dpkg-source: info: using source format '3.0 (quilt)'
> dpkg-source: info: building bmtk using existing ./bmtk_1.0.6+ds.orig.tar.xz
> dpkg-source: info: using patch list from debian/patches/series
> dpkg-source: warning: ignoring deletion of file docs/autodocs/.nojekyll, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file docs/autodocs/source/aibs_sphinx/static/external_assets/stylesheets_orig/portal_icon_font.eot, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file docs/autodocs/source/aibs_sphinx/static/external_assets/stylesheets_orig/portal_icon_font.ttf, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file docs/autodocs/source/aibs_sphinx/static/external_assets/stylesheets_orig/portal_icon_font.woff, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file bmtk/simulator/core/__init__.py, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file bmtk/tests/__init__.py, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file bmtk/tests/simulator/__init__.py, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file bmtk/tests/simulator/bionet/__init__.py, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file bmtk/tests/simulator/pointnet/__init__.py, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file bmtk/tests/simulator/popnet/__init__.py, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file bmtk/tests/utils/reports/compartment/test_compartment_report.py, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file bmtk/tests/utils/reports/compartment/__init__.py, use --include-removal to override
> dpkg-source: warning: ignoring deletion of file bmtk/tests/utils/reports/spike_trains/__init__.py, use --include-removal to override
> dpkg-source: warning: file bmtk-1.0.6+ds/bmtk.egg-info/SOURCES.txt has no final newline (either original or modified version)
> dpkg-source: error: cannot represent change to docs/autodocs/source/_static/_tutorial_images/bmtk_lnp.png: binary file contents changed
> dpkg-source: error: add docs/autodocs/source/_static/_tutorial_images/bmtk_lnp.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/autodocs/source/_static/_tutorial_images/filternet_lnp.png: binary file contents changed
> dpkg-source: error: add docs/autodocs/source/_static/_tutorial_images/filternet_lnp.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/autodocs/source/_static/_tutorial_images/filternet_sfilt_params.png: binary file contents changed
> dpkg-source: error: add docs/autodocs/source/_static/_tutorial_images/filternet_sfilt_params.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/autodocs/source/_static/_tutorial_images/filternet_spat_filter.png: binary file contents changed
> dpkg-source: error: add docs/autodocs/source/_static/_tutorial_images/filternet_spat_filter.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/autodocs/source/_static/_tutorial_images/filternet_temp_filter.png: binary file contents changed
> dpkg-source: error: add docs/autodocs/source/_static/_tutorial_images/filternet_temp_filter.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/autodocs/source/_static/_tutorial_images/filternet_tfilt_params.png: binary file contents changed
> dpkg-source: error: add docs/autodocs/source/_static/_tutorial_images/filternet_tfilt_params.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/autodocs/source/_static/_tutorial_images/levels_of_resolution.png: binary file contents changed
> dpkg-source: error: add docs/autodocs/source/_static/_tutorial_images/levels_of_resolution.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/autodocs/source/_static/_tutorial_images/raster_120cells_orig.png: binary file contents changed
> dpkg-source: error: add docs/autodocs/source/_static/_tutorial_images/raster_120cells_orig.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: cannot represent change to docs/autodocs/source/_static/_tutorial_images/raster_120cells_perturbed.png: binary file contents changed
> dpkg-source: error: add docs/autodocs/source/_static/_tutorial_images/raster_120cells_perturbed.png in debian/source/include-binaries if you want to store the modified binary in the debian tarball
> dpkg-source: error: unrepresentable changes to source
> dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/bmtk_1.0.6+ds-1_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.