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David,<br>
<br>
I assume the most important thing is that the copyright and "for
non-profit use only"<br>
warning is included in the Debian repackaging. If those are
preserved, I'm happy.<br>
<br>
Cheers,<br>
<br>
Tim<br>
<div class="moz-cite-prefix">On 28/02/13 2:07 AM, Gibbons, David
wrote:<br>
</div>
<blockquote
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<div class="WordSection1">
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Hi
Tim,<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">My
only concern would be that we not create any conflict with
the arrangement we have between the University of
Washington, UC San Diego and the University of Queensland
regarding The Meme Suite. The technical compatibilities of
the various versions are outside of my scope, but as long as
we are not deviating from the agreement between our
institutions, I have no issues with the request.<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><br>
Thanks for copying me.<br>
<br>
Dave<o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">David G.
Gibbons, PE, MBA<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Assistant
Director<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Physical
Sciences Licensing<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Technology
Transfer Office, UC San Diego<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">9500 Gilman
Drive, MC 0910<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">La Jolla, CA
92093-0910<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">(858)534-0175<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><a class="moz-txt-link-abbreviated" href="mailto:dgibbons@ucsd.edu">dgibbons@ucsd.edu</a><o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><a class="moz-txt-link-freetext" href="http://invent.ucsd.edu">http://invent.ucsd.edu</a><o:p></o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span
style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<div>
<div style="border:none;border-top:solid #B5C4DF
1.0pt;padding:3.0pt 0in 0in 0in">
<p class="MsoNormal"><b><span
style="font-size:10.0pt;font-family:"Tahoma","sans-serif";color:windowtext">From:</span></b><span
style="font-size:10.0pt;font-family:"Tahoma","sans-serif";color:windowtext">
Timothy Bailey [<a class="moz-txt-link-freetext" href="mailto:t.bailey@imb.uq.edu.au">mailto:t.bailey@imb.uq.edu.au</a>]
<br>
<b>Sent:</b> Wednesday, February 27, 2013 12:13 AM<br>
<b>To:</b> James Johnson<br>
<b>Cc:</b> Gibbons, David; Martin Frith; MEME Support;
Debian Med Packaging Team<br>
<b>Subject:</b> Re: Fwd: Re: [<a class="moz-txt-link-abbreviated" href="mailto:j.johnson@imb.uq.edu.au">j.johnson@imb.uq.edu.au</a>:
Re: Installation of binary tools inside MEME]<o:p></o:p></span></p>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal" style="margin-bottom:12.0pt">James,<o:p></o:p></p>
<div>
<p class="MsoNormal">On 18/02/13 11:51 AM, James Johnson
wrote:<o:p></o:p></p>
</div>
<blockquote style="margin-top:5.0pt;margin-bottom:5.0pt">
<p class="MsoNormal">Hi Tim, Dave,<br>
<br>
The Debian Med Packaging Team want to know if they can
backport GLAM2 improvements (presuming there are any?) in
the MEME Suite to the more permissively licensed GLAM2
repository?<o:p></o:p></p>
</blockquote>
<p class="MsoNormal">I have no problems with this as long as
they do the work.<br>
<br>
However, that will mean that the Debian version of Glam2
differs from the "standalone" version<br>
Martin created. It will match the "MEME Suite" version,
though.<br>
<br>
Cheers,<br>
<br>
Tim<br>
<br>
<o:p></o:p></p>
<p class="MsoNormal"><br>
~James<o:p></o:p></p>
<div>
<p class="MsoNormal"><br>
-------- Original Message -------- <o:p></o:p></p>
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<p class="MsoNormal" style="text-align:right"
align="right"><b>Subject: <o:p></o:p></b></p>
</td>
<td style="padding:0in 0in 0in 0in">
<p class="MsoNormal">Re: [<a moz-do-not-send="true"
href="mailto:j.johnson@imb.uq.edu.au">j.johnson@imb.uq.edu.au</a>:
Re: Installation of binary tools inside MEME]<o:p></o:p></p>
</td>
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valign="top">
<p class="MsoNormal" style="text-align:right"
align="right"><b>Date: <o:p></o:p></b></p>
</td>
<td style="padding:0in 0in 0in 0in">
<p class="MsoNormal">Fri, 15 Feb 2013 11:04:58 +0000<o:p></o:p></p>
</td>
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valign="top">
<p class="MsoNormal" style="text-align:right"
align="right"><b>From: <o:p></o:p></b></p>
</td>
<td style="padding:0in 0in 0in 0in">
<p class="MsoNormal">Tim Booth <a
moz-do-not-send="true"
href="mailto:avarus@fastmail.fm"><avarus@fastmail.fm></a><o:p></o:p></p>
</td>
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<td style="padding:0in 0in 0in 0in" nowrap="nowrap"
valign="top">
<p class="MsoNormal" style="text-align:right"
align="right"><b>To: <o:p></o:p></b></p>
</td>
<td style="padding:0in 0in 0in 0in">
<p class="MsoNormal">Andreas Tille <a
moz-do-not-send="true"
href="mailto:andreas@fam-tille.de"><andreas@fam-tille.de></a><o:p></o:p></p>
</td>
</tr>
<tr>
<td style="padding:0in 0in 0in 0in" nowrap="nowrap"
valign="top">
<p class="MsoNormal" style="text-align:right"
align="right"><b>CC: <o:p></o:p></b></p>
</td>
<td style="padding:0in 0in 0in 0in">
<p class="MsoNormal">Debian Med Packaging Team <a
moz-do-not-send="true"
href="mailto:debian-med-packaging@lists.alioth.debian.org">
<debian-med-packaging@lists.alioth.debian.org></a>, James Johnson
<a moz-do-not-send="true"
href="mailto:j.johnson@imb.uq.edu.au">
<j.johnson@imb.uq.edu.au></a><o:p></o:p></p>
</td>
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<p class="MsoNormal" style="margin-bottom:12.0pt"><o:p> </o:p></p>
<pre>Hi,<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre>> On Thu, Feb 14, 2013 at 06:08:08PM +0000, Tim Booth wrote:<o:p></o:p></pre>
<pre>> > Yes, I did start looking at Meme but quickly realised it was a lot more<o:p></o:p></pre>
<pre>> > work than I thought to do a proper job on it. I think all I wanted to<o:p></o:p></pre>
<pre>> > do in the first instance was to get an updated glam2 binary package<o:p></o:p></pre>
<pre>> > based upon the improved glam2 source within the meme code. I guess this<o:p></o:p></pre>
<pre>> > is now the definitive glam2 as the original standalone source hasn't<o:p></o:p></pre>
<pre>> > been updated since 2008.<o:p></o:p></pre>
<pre>> <o:p></o:p></pre>
<pre>> We might try to do some comparison. Charles previously mentioned that<o:p></o:p></pre>
<pre>> we should keep the glam2 package from Debian which is free (PD) and meme<o:p></o:p></pre>
<pre>> currently has a non-free license (according to DFSG). So if glam2 inside<o:p></o:p></pre>
<pre>> meme is basically unchanged it might be reasonable to ignore the code<o:p></o:p></pre>
<pre>> inside meme (or asking upstream for permission to backport the changes.)<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre>A quick "diff" across the original glam2 vs. the meme glam2 suggests<o:p></o:p></pre>
<pre>that several new options have been added for meme - see<o:p></o:p></pre>
<pre>src/glam2_args.c.<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre>I would imagine that scripts within meme rely on these options. In<o:p></o:p></pre>
<pre>fact, a quick grepping shows that scripts/glam2_webservice.pl.in calls<o:p></o:p></pre>
<pre>"glam2 -M" which is an option added for meme. I've not looked for other<o:p></o:p></pre>
<pre>examples.<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre>I hope that upstream can at least be persuaded to put their changes to<o:p></o:p></pre>
<pre>glam2 under a free license like the original glam2. They may not be<o:p></o:p></pre>
<pre>legally bound to do so but it would be highly disingenuous of them to<o:p></o:p></pre>
<pre>refuse.<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre>Cheers,<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre>TIM<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<pre><o:p> </o:p></pre>
<pre>-- <o:p></o:p></pre>
<pre>If you can't find an apposite quote for your sig, just make one up.<o:p></o:p></pre>
<pre> - Anon<o:p></o:p></pre>
<pre><o:p> </o:p></pre>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal">-- <o:p></o:p></p>
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cellpadding="0" width="75%">
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<p class="MsoNormal">Timothy L. Bailey<o:p></o:p></p>
</td>
<td style="padding:1.5pt 1.5pt 1.5pt 1.5pt" valign="top">
<p class="MsoNormal"><a moz-do-not-send="true"
href="mailto:t.bailey@imb.uq.edu.au">t.bailey@imb.uq.edu.au</a><o:p></o:p></p>
</td>
</tr>
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<td style="padding:1.5pt 1.5pt 1.5pt 1.5pt" valign="top">
<p class="MsoNormal">Institute for Molecular
Bioscience<o:p></o:p></p>
</td>
<td style="padding:1.5pt 1.5pt 1.5pt 1.5pt" valign="top">
<p class="MsoNormal">VOICE: (61)-(7)-3346-2614<o:p></o:p></p>
</td>
</tr>
<tr>
<td style="padding:1.5pt 1.5pt 1.5pt 1.5pt" valign="top">
<p class="MsoNormal">The University of Queensland<o:p></o:p></p>
</td>
<td style="padding:1.5pt 1.5pt 1.5pt 1.5pt" valign="top">
<p class="MsoNormal">FAX: (61)-(7)-3346-2101<o:p></o:p></p>
</td>
</tr>
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<td style="padding:1.5pt 1.5pt 1.5pt 1.5pt" valign="top">
<p class="MsoNormal">Brisbane, Qld. 4072 Australia<o:p></o:p></p>
</td>
<td style="padding:1.5pt 1.5pt 1.5pt 1.5pt" valign="top">
<p class="MsoNormal"><a moz-do-not-send="true"
href="http://research.imb.uq.edu.au/%7Etbailey">http://research.imb.uq.edu.au/~tbailey</a><o:p></o:p></p>
</td>
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<p class="MsoNormal"><span style="color:windowtext"><o:p> </o:p></span></p>
</div>
</div>
</blockquote>
<br>
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<table border="0" cellpadding="2" cellspacing="2" width="75%">
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<td valign="top">Timothy L. Bailey<br>
</td>
<td valign="top"><a href="mailto:t.bailey@imb.uq.edu.au">t.bailey@imb.uq.edu.au</a><br>
</td>
</tr>
<tr>
<td valign="top">Institute for Molecular Bioscience<br>
</td>
<td valign="top">VOICE: (61)-(7)-3346-2614<br>
</td>
</tr>
<tr>
<td valign="top">The University of Queensland<br>
</td>
<td valign="top">FAX: (61)-(7)-3346-2101<br>
</td>
</tr>
<tr>
<td valign="top">Brisbane, Qld. 4072 Australia<br>
</td>
<td valign="top"><a class="moz-txt-link-freetext"
href="http://research.imb.uq.edu.au/%7Etbailey">http://research.imb.uq.edu.au/~tbailey</a></td>
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