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<div class="moz-cite-prefix">Hi Andreas,<br>
<br>
Sorry I hadn't seen your previous mail.<br>
I'll try to get an answer and apply the changes ASAP<br>
<br>
Thank you,<br>
David<br>
<br>
<br>
On 02/10/2014 11:10, Andreas Tille wrote:<br>
</div>
<blockquote cite="mid:20141002091015.GB17408@an3as.eu" type="cite">
<pre wrap="">Hi David,
I forgot to CC you in my last ping. Please note that it is evident to
react *right now* if you want to get the latest version into the next
stable release.
Kind regards
Andreas.
On Tue, Sep 30, 2014 at 04:10:07PM +0200, Andreas Tille wrote:
</pre>
<blockquote type="cite">
<pre wrap="">Hi David,
any news about this?
Kind regards
Andreas.
On Wed, Sep 17, 2014 at 03:21:43PM +0200, Andreas Tille wrote:
</pre>
<blockquote type="cite">
<pre wrap="">Hi David,
On Tue, Sep 16, 2014 at 05:07:21PM +0200, David Parsons wrote:
</pre>
<blockquote type="cite">
<pre wrap="">Hi Andreas,
I remember the kissplice team decided to stop maintaining for non
64bit architectures. So I suppose this is it.
I will ask them what they think but I guess they will choose to
simply restrain the package to 64bit archs. Would that be OK in
debian-med standards ?
</pre>
</blockquote>
<pre wrap="">
Yes, for sure. It just needs to be expressed in debian/control
accordingly. So please let us know to be sure and than upload a
proper package.
</pre>
<blockquote type="cite">
<pre wrap="">Thanks for the input,
</pre>
</blockquote>
<pre wrap="">
You are welcome
Andreas.
</pre>
<blockquote type="cite">
<pre wrap="">
On 16/09/2014 16:51, Andreas Tille wrote:
</pre>
<blockquote type="cite">
<pre wrap="">Hi David,
according to the build status page of kissplice[1] the tests are failing
on non 64bit architectures. Using the log of i386 as example it looks
like
...
dh_auto_test -a
make[1]: Entering directory '/«PKGBUILDDIR»/obj-i586-linux-gnu'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j1
Test project /«PKGBUILDDIR»/obj-i586-linux-gnu
Start 1: KisspliceBasicTest
1/8 Test #1: KisspliceBasicTest ............... Passed 0.11 sec
Start 2: KisspliceDBGTest
2/8 Test #2: KisspliceDBGTest .................***Failed Required regular expression not found.Regex=[test SUCCESSFUL
] 30.98 sec
/«PKGBUILDDIR»/obj-i586-linux-gnu/bin/kissplice -k 25 -M 1000 -r /«PKGBUILDDIR»/tests/integration_tests/data/HBM75brain_100000.fasta -r /«PKGBUILDDIR»/tests/integration_tests/data/HBM75liver_100000.fasta -o /«PKGBUILDDIR»/tests/integration_tests/results
Integration test error : Problem with /«PKGBUILDDIR»/obj-i586-linux-gnu/lib/kissplice/ks_kissreadsSNPS
Start 3: KisspliceTwoSequencesTest
3/8 Test #3: KisspliceTwoSequencesTest ........***Failed Required regular expression not found.Regex=[test SUCCESSFUL
] 21.68 sec
/«PKGBUILDDIR»/obj-i586-linux-gnu/bin/kissplice -s -k 25 -M 1000 -r /«PKGBUILDDIR»/tests/integration_tests/data/HBM75brain_100000.fasta -r /«PKGBUILDDIR»/tests/integration_tests/data/HBM75liver_100000.fasta -C 0
Integration test error : Problem with /«PKGBUILDDIR»/obj-i586-linux-gnu/lib/kissplice/ks_kissreadsSNPS
Start 4: KisspliceGraphAndSequenceTest
4/8 Test #4: KisspliceGraphAndSequenceTest ....***Failed Required regular expression not found.Regex=[test SUCCESSFUL
] 10.03 sec
/«PKGBUILDDIR»/obj-i586-linux-gnu/bin/kissplice -s -k 25 -M 1000 -g /«PKGBUILDDIR»/tests/integration_tests/data/graph_HBM75brain_100000_HBM75liver_100000_k25 -r /«PKGBUILDDIR»/tests/integration_tests/data/HBM75brain_100000.fasta -C 0
Integration test error : Problem with /«PKGBUILDDIR»/obj-i586-linux-gnu/lib/kissplice/ks_kissreadsSNPS
Start 5: KisspliceGraphTest
5/8 Test #5: KisspliceGraphTest ............... Passed 10.04 sec
Start 6: ksBubbleEnumerationTest
6/8 Test #6: ksBubbleEnumerationTest .......... Passed 0.04 sec
Start 7: ksRunModulesTest
7/8 Test #7: ksRunModulesTest ................. Passed 0.05 sec
Start 8: ksErrorRemovalTest
8/8 Test #8: ksErrorRemovalTest ............... Passed 0.13 sec
63% tests passed, 3 tests failed out of 8
Total Test time (real) = 73.08 sec
The following tests FAILED:
2 - KisspliceDBGTest (Failed)
3 - KisspliceTwoSequencesTest (Failed)
4 - KisspliceGraphAndSequenceTest (Failed)
Errors while running CTest
make[1]: *** [test] Error 8
...
Do you see any chance to fix this?
Kind regards
Andreas.
[1] <a class="moz-txt-link-freetext" href="https://buildd.debian.org/status/package.php?p=kissplice">https://buildd.debian.org/status/package.php?p=kissplice</a>
</pre>
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