Thanks!<br><br><div class="gmail_quote">On Tue Feb 03 2015 at 4:21:08 AM Debian Bug Tracking System <<a href="mailto:owner@bugs.debian.org">owner@bugs.debian.org</a>> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">This is an automatic notification regarding your Bug report<br>
which was filed against the bowtie package:<br>
<br>
#776881: bowtie: '-debug' binaries break `bowtie-build`<br>
<br>
It has been closed by Charles Plessy <<a href="mailto:plessy@debian.org" target="_blank">plessy@debian.org</a>>.<br>
<br>
Their explanation is attached below along with your original report.<br>
If this explanation is unsatisfactory and you have not received a<br>
better one in a separate message then please contact Charles Plessy <<a href="mailto:plessy@debian.org" target="_blank">plessy@debian.org</a>> by<br>
replying to this email.<br>
<br>
<br>
--<br>
776881: <a href="http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=776881" target="_blank">http://bugs.debian.org/cgi-<u></u>bin/bugreport.cgi?bug=776881</a><br>
Debian Bug Tracking System<br>
Contact <a href="mailto:owner@bugs.debian.org" target="_blank">owner@bugs.debian.org</a> with problems<br>
<br><br><br>---------- Forwarded message ----------<br>From: Charles Plessy <<a href="mailto:plessy@debian.org" target="_blank">plessy@debian.org</a>><br>To: <a href="mailto:776881-close@bugs.debian.org" target="_blank">776881-close@bugs.debian.org</a><br>Cc: <br>Date: Tue, 03 Feb 2015 03:19:00 +0000<br>Subject: Bug#776881: fixed in bowtie 1.1.1-2<br>Source: bowtie<br>
Source-Version: 1.1.1-2<br>
<br>
We believe that the bug you reported is fixed in the latest version of<br>
bowtie, which is due to be installed in the Debian FTP archive.<br>
<br>
A summary of the changes between this version and the previous one is<br>
attached.<br>
<br>
Thank you for reporting the bug, which will now be closed. If you<br>
have further comments please address them to <a href="mailto:776881@bugs.debian.org" target="_blank">776881@bugs.debian.org</a>,<br>
and the maintainer will reopen the bug report if appropriate.<br>
<br>
Debian distribution maintenance software<br>
pp.<br>
Charles Plessy <<a href="mailto:plessy@debian.org" target="_blank">plessy@debian.org</a>> (supplier of updated bowtie package)<br>
<br>
(This message was generated automatically at their request; if you<br>
believe that there is a problem with it please contact the archive<br>
administrators by mailing <a href="mailto:ftpmaster@ftp-master.debian.org" target="_blank">ftpmaster@ftp-master.debian.<u></u>org</a>)<br>
<br>
<br>
-----BEGIN PGP SIGNED MESSAGE-----<br>
Hash: SHA512<br>
<br>
Format: 1.8<br>
Date: Tue, 03 Feb 2015 10:44:39 +0900<br>
Source: bowtie<br>
Binary: bowtie bowtie-examples<br>
Architecture: source amd64 all<br>
Version: 1.1.1-2<br>
Distribution: unstable<br>
Urgency: high<br>
Maintainer: Debian Med Packaging Team <<a href="mailto:debian-med-packaging@lists.alioth.debian.org" target="_blank">debian-med-packaging@lists.<u></u>alioth.debian.org</a>><br>
Changed-By: Charles Plessy <<a href="mailto:plessy@debian.org" target="_blank">plessy@debian.org</a>><br>
Description:<br>
bowtie - Ultrafast memory-efficient short read aligner<br>
bowtie-examples - Examples for bowtie, the ultrafast memory-efficient short read al<br>
Closes: 776881<br>
Changes:<br>
bowtie (1.1.1-2) unstable; urgency=high<br>
.<br>
* Team upload.<br>
* Install missing commands. Closes: #776881.<br>
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-----END PGP SIGNATURE-----<br><br><br>---------- Forwarded message ----------<br>From: "Michael R. Crusoe" <<a href="mailto:michael.crusoe@gmail.com" target="_blank">michael.crusoe@gmail.com</a>><br>To: Debian Bug Tracking System <<a href="mailto:submit@bugs.debian.org" target="_blank">submit@bugs.debian.org</a>><br>Cc: <br>Date: Mon, 02 Feb 2015 20:14:46 +0000<br>Subject: bowtie: '-debug' binaries break `bowtie-build`<br>Package: bowtie<br>
Version: 1.1.1-1<br>
Severity: grave<br>
Justification: renders package unusable<br>
<br>
<br>
Hello,<br>
<br>
Looks like the debug versions of 'bowtie-build-l' and 'bowtie-build-s' are present instead thus breaking the 'bowtie-build' wrapper making the package useless.<br>
<br>
<br>
<br>
-- System Information:<br>
Debian Release: 8.0<br>
APT prefers unstable<br>
APT policy: (500, 'unstable')<br>
Architecture: amd64 (x86_64)<br>
<br>
Kernel: Linux 3.13.0-44-generic (SMP w/12 CPU cores)<br>
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968) (ignored: LC_ALL set to C)<br>
Shell: /bin/sh linked to /bin/dash<br>
Init: unable to detect<br>
<br>
Versions of packages bowtie depends on:<br>
ii libc6 2.19-14<br>
ii libgcc1 1:4.9.2-10<br>
ii libstdc++6 4.9.2-10<br>
ii python 2.7.8-2<br>
<br>
bowtie recommends no packages.<br>
<br>
Versions of packages bowtie suggests:<br>
pn bowtie-examples <none><br>
<br>
-- no debconf information<br>
</blockquote></div>