<br><br><div class="gmail_quote"><div dir="ltr">Le ven. 12 févr. 2016 16:31, Andreas Tille <<a href="mailto:andreas@an3as.eu">andreas@an3as.eu</a>> a écrit :<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi,<br>
<br>
I upgraded Git that was featuring version 2.0.1+dfsg.1 meanwhile to<br>
Build-Depend and use libngs-java. I think we should continue from this<br>
point to fix the reported bug. Unfortunately I was running in more<br>
errors of the test suite which looked more relevant than the reported<br>
one. Could anyone with Java experience please have a look?<br>
<br></blockquote></div><div><br></div><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi<br></blockquote></div><div><br></div><div>I will have a look next week</div><div><br></div><div>Olivier</div><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Kind regards<br>
<br>
Andreas.<br>
<br>
On Thu, Feb 11, 2016 at 09:01:59PM +0100, Andreas Tille wrote:<br>
> Hi,<br>
><br>
> any hint why this test that worked before might fail since end of<br>
> December?<br>
><br>
> Kind regards<br>
><br>
> Andreas.<br>
><br>
> On Mon, Dec 21, 2015 at 10:59:11AM +0000, Chris Lamb wrote:<br>
> > Source: htsjdk<br>
> > Version: 1.138+dfsg.1-4<br>
> > Severity: serious<br>
> > Justification: fails to build from source<br>
> > User: <a href="mailto:reproducible-builds@lists.alioth.debian.org" target="_blank">reproducible-builds@lists.alioth.debian.org</a><br>
> > Usertags: ftbfs<br>
> > X-Debbugs-Cc: <a href="mailto:reproducible-builds@lists.alioth.debian.org" target="_blank">reproducible-builds@lists.alioth.debian.org</a><br>
> ><br>
> > Dear Maintainer,<br>
> ><br>
> > htsjdk fails to build from source in unstable/amd64:<br>
> ><br>
> > [..]<br>
> ><br>
> > [testng] PASSED: testReadAndSkipWithMultipleBlocks([null of CHAR, null of CHAR, null of FLOAT])<br>
> > [testng] PASSED: testReadAndSkipWithMultipleBlocks([null of CHAR, null of CHAR, null of CHAR])<br>
> > [testng] FAILED: testHTTPNotExist<br>
> > [testng] java.lang.AssertionError: expected [false] but found [true]<br>
> > [testng] at org.testng.Assert.fail(Assert.java:94)<br>
> > [testng] at org.testng.Assert.failNotEquals(Assert.java:496)<br>
> > [testng] at org.testng.Assert.assertEquals(Assert.java:125)<br>
> > [testng] at org.testng.Assert.assertEquals(Assert.java:288)<br>
> > [testng] at org.testng.Assert.assertEquals(Assert.java:298)<br>
> > [testng] at htsjdk.tribble.util.ParsingUtilsTest.tstExists(ParsingUtilsTest.java:142)<br>
> > [testng] at htsjdk.tribble.util.ParsingUtilsTest.testHTTPNotExist(ParsingUtilsTest.java:137)<br>
> > [testng] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)<br>
> > [testng] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)<br>
> > [testng] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
> > [testng] at java.lang.reflect.Method.invoke(Method.java:606)<br>
> > [testng] at org.testng.internal.MethodInvocationHelper.invokeMethod(MethodInvocationHelper.java:85)<br>
> > [testng] at org.testng.internal.Invoker.invokeMethod(Invoker.java:639)<br>
> > [testng] at org.testng.internal.Invoker.invokeTestMethod(Invoker.java:821)<br>
> > [testng] at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1131)<br>
> > [testng] at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124)<br>
> > [testng] at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108)<br>
> > [testng] at org.testng.TestRunner.privateRun(TestRunner.java:773)<br>
> > [testng] at org.testng.TestRunner.run(TestRunner.java:623)<br>
> > [testng] at org.testng.SuiteRunner.runTest(SuiteRunner.java:357)<br>
> > [testng] at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352)<br>
> > [testng] at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310)<br>
> > [testng] at org.testng.SuiteRunner.run(SuiteRunner.java:259)<br>
> > [testng] at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)<br>
> > [testng] at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86)<br>
> > [testng] at org.testng.TestNG.runSuitesSequentially(TestNG.java:1185)<br>
> > [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1110)<br>
> > [testng] at org.testng.TestNG.run(TestNG.java:1018)<br>
> > [testng] at org.testng.TestNG.privateMain(TestNG.java:1325)<br>
> > [testng] at org.testng.TestNG.main(TestNG.java:1294)<br>
> > [testng]<br>
> > [testng] SKIPPED: basic<br>
> > [testng] org.testng.TestNGException:<br>
> > [testng] Method public void htsjdk.samtools.util.IupacTest.basic(java.lang.String) throws java.lang.Exception requires a @DataProvider named : basicDataProvider<br>
> > [testng] at org.testng.internal.Parameters.findDataProvider(Parameters.java:262)<br>
> > [testng] at org.testng.internal.Parameters.handleParameters(Parameters.java:418)<br>
> > [testng] at org.testng.internal.Invoker.handleParameters(Invoker.java:1276)<br>
> > [testng] at org.testng.internal.Invoker.createParameters(Invoker.java:992)<br>
> > [testng] at org.testng.internal.Invoker.invokeTestMethods(Invoker.java:1082)<br>
> > [testng] at org.testng.internal.TestMethodWorker.invokeTestMethods(TestMethodWorker.java:124)<br>
> > [testng] at org.testng.internal.TestMethodWorker.run(TestMethodWorker.java:108)<br>
> > [testng] at org.testng.TestRunner.privateRun(TestRunner.java:773)<br>
> > [testng] at org.testng.TestRunner.run(TestRunner.java:623)<br>
> > [testng] at org.testng.SuiteRunner.runTest(SuiteRunner.java:357)<br>
> > [testng] at org.testng.SuiteRunner.runSequentially(SuiteRunner.java:352)<br>
> > [testng] at org.testng.SuiteRunner.privateRun(SuiteRunner.java:310)<br>
> > [testng] at org.testng.SuiteRunner.run(SuiteRunner.java:259)<br>
> > [testng] at org.testng.SuiteRunnerWorker.runSuite(SuiteRunnerWorker.java:52)<br>
> > [testng] at org.testng.SuiteRunnerWorker.run(SuiteRunnerWorker.java:86)<br>
> > [testng] at org.testng.TestNG.runSuitesSequentially(TestNG.java:1185)<br>
> > [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1110)<br>
> > [testng] at org.testng.TestNG.run(TestNG.java:1018)<br>
> > [testng] at org.testng.TestNG.privateMain(TestNG.java:1325)<br>
> > [testng] at org.testng.TestNG.main(TestNG.java:1294)<br>
> > [testng]<br>
> > [testng]<br>
> > [testng] ===============================================<br>
> > [testng] Ant test<br>
> > [testng] Tests run: 22291, Failures: 1, Skips: 1<br>
> > [testng] ===============================================<br>
> > [testng]<br>
> > [testng]<br>
> > [testng] ===============================================<br>
> > [testng] htsjdk-tests<br>
> > [testng] Total tests run: 22291, Failures: 1, Skips: 1<br>
> > [testng] ===============================================<br>
> > [testng]<br>
> > [testng] [TestNG] Time taken by org.testng.reporters.JUnitReportReporter@701b9555: 373 ms<br>
> > [testng] [TestNG] Time taken by org.testng.reporters.SuiteHTMLReporter@361b90be: 1395 ms<br>
> > [testng] [TestNG] Time taken by org.testng.reporters.jq.Main@38d591cc: 2560 ms<br>
> > [testng] [TestNG] Time taken by org.testng.reporters.XMLReporter@26538d04: 944 ms<br>
> > [testng] [TestNG] Time taken by [FailedReporter passed=0 failed=0 skipped=0]: 18 ms<br>
> > [testng] [TestNG] Time taken by org.testng.reporters.EmailableReporter2@1b66a538: 266 ms<br>
> > [testng] The tests failed.<br>
> > [junitreport] the file /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/testng-failed.xml is not a valid testsuite XML document<br>
> > [junitreport] the file /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/testng-results.xml is not a valid testsuite XML document<br>
> > [junitreport] Processing /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/TESTS-TestSuites.xml to /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test/junit-noframes.html<br>
> > [junitreport] Loading stylesheet /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/etc/test/junit-noframes.xsl<br>
> > [junitreport] Transform time: 243ms<br>
> > [copy] Copying 1 file to /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/dist/test<br>
> ><br>
> > BUILD FAILED<br>
> > /home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1/build.xml:151: There were failed unit tests<br>
> ><br>
> > Total time: 6 minutes 39 seconds<br>
> > dh_auto_build: ant -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 -Ddebug=true test returned exit code 1<br>
> > debian/rules:24: recipe for target 'override_dh_auto_test' failed<br>
> > make[1]: *** [override_dh_auto_test] Error 2<br>
> > make[1]: Leaving directory '/home/lamby/temp/cdt.20151221104713.yWL3WPWVr4/htsjdk-1.138+dfsg.1'<br>
> > debian/rules:10: recipe for target 'build' failed<br>
> > make: *** [build] Error 2<br>
> ><br>
> > [..]<br>
> ><br>
> > The full build log is attached.<br>
> ><br>
> ><br>
> > Regards,<br>
> ><br>
> > --<br>
> > ,''`.<br>
> > : :' : Chris Lamb<br>
> > `. `'` <a href="mailto:lamby@debian.org" target="_blank">lamby@debian.org</a> / <a href="http://chris-lamb.co.uk" rel="noreferrer" target="_blank">chris-lamb.co.uk</a><br>
> > `-<br>
><br>
><br>
> > _______________________________________________<br>
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><br>
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</blockquote></div>