<div>That would have been my guess too, but Bio:: Graphics 2.40 is the right version. When running build test on a virgin Mint 18.2 system with Bio::Perl 1.7.1 and Bio::Graphics 2.40 I'm getting 100% test success.  This is very puzzling. </div><div><br></div><div>I'll  take a closer look tonight. </div><div><br></div><div>Lincoln</div><div><br><div class="gmail_quote"><div>On Tue, Jan 17, 2017 at 6:27 PM gregor herrmann <<a href="mailto:gregoa@debian.org">gregoa@debian.org</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">On Tue, 17 Jan 2017 18:06:02 -0500, Lincoln Stein wrote:<br class="gmail_msg"><br><br class="gmail_msg"><br>> Not good! But I believe that Gregor found that all these were caused by the<br class="gmail_msg"><br>> testing suite not finding the proper data files due to an assumption about<br class="gmail_msg"><br>> the current working directory. When he fixed this, there were just a<br class="gmail_msg"><br>> handful of tests still failing.<br class="gmail_msg"><br><br class="gmail_msg"><br>Right, that's when I built from a clone of the debian package git<br class="gmail_msg"><br>repo. With your github repo, this was not necessary for reasons I<br class="gmail_msg"><br>haven't yet understood.<br class="gmail_msg"><br><br class="gmail_msg"><br>> Gregor, is there a patch file that I can<br class="gmail_msg"><br>> apply to get up to the same point you got to?<br class="gmail_msg"><br><br class="gmail_msg"><br>Oh, scratch what I wrote above, now I get the same with the debian<br class="gmail_msg"><br>repo, so no more "Can't find foo in @INC". Good, at least the<br class="gmail_msg"><br>failures are consistent now (for whatever reason, maybe the 5.24.1<br class="gmail_msg"><br>upload to unstable changed something), and no patch for that part<br class="gmail_msg"><br>needed.<br class="gmail_msg"><br><br class="gmail_msg"><br>So now we are still at:<br class="gmail_msg"><br><br class="gmail_msg"><br><br class="gmail_msg"><br>t/03.render.t .............<br class="gmail_msg"><br>1..150<br class="gmail_msg"><br>ok 1<br class="gmail_msg"><br>ok 2<br class="gmail_msg"><br>ok 3<br class="gmail_msg"><br>ok 4<br class="gmail_msg"><br>ok 5<br class="gmail_msg"><br>ok 6<br class="gmail_msg"><br>ok 7<br class="gmail_msg"><br>ok 8<br class="gmail_msg"><br>ok 9<br class="gmail_msg"><br>ok 10<br class="gmail_msg"><br>ok 11<br class="gmail_msg"><br>ok 12<br class="gmail_msg"><br>ok 13<br class="gmail_msg"><br>ok 14<br class="gmail_msg"><br>ok 15<br class="gmail_msg"><br>ok 16<br class="gmail_msg"><br>ok 17<br class="gmail_msg"><br>ok 18<br class="gmail_msg"><br>ok 19<br class="gmail_msg"><br>ok 20<br class="gmail_msg"><br>ok 21<br class="gmail_msg"><br>ok 22<br class="gmail_msg"><br>ok 23<br class="gmail_msg"><br>ok 24<br class="gmail_msg"><br>ok 25<br class="gmail_msg"><br>ok 26<br class="gmail_msg"><br>ok 27<br class="gmail_msg"><br>ok 28<br class="gmail_msg"><br>ok 29<br class="gmail_msg"><br>ok 30<br class="gmail_msg"><br>ok 31<br class="gmail_msg"><br>ok 32<br class="gmail_msg"><br>ok 33<br class="gmail_msg"><br>ok 34<br class="gmail_msg"><br>ok 35<br class="gmail_msg"><br>ok 36<br class="gmail_msg"><br>ok 37<br class="gmail_msg"><br>ok 38<br class="gmail_msg"><br>ok 39<br class="gmail_msg"><br>ok 40<br class="gmail_msg"><br>ok 41<br class="gmail_msg"><br>Dubious, test returned 255 (wstat 65280, 0xff00)<br class="gmail_msg"><br>Failed 109/150 subtests<br class="gmail_msg"><br>Sometimes this test gets 'stuck'. If this happens, kill the test and Build test again.<br class="gmail_msg"><br>RenderPanels error:<br class="gmail_msg"><br>------------- EXCEPTION -------------<br class="gmail_msg"><br>MSG: The requested glyph class, ``span'' is not available: Attempt to reload Bio/Graphics/Glyph/<a href="http://span.pm" rel="noreferrer" class="gmail_msg" target="_blank">span.pm</a> aborted.<br class="gmail_msg"><br>Compilation failed in require at (eval 138) line 2, <> line 132.<br class="gmail_msg"><br><br class="gmail_msg"><br>STACK Bio::Graphics::Glyph::Factory::make_glyph /usr/share/perl5/Bio/Graphics/Glyph/Factory.pm:342<br class="gmail_msg"><br>STACK Bio::Graphics::Glyph::add_feature /usr/share/perl5/Bio/Graphics/Glyph.pm:424<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::RenderPanels::add_features_to_track /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1869<br class="gmail_msg"><br>STACK (eval) /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1597<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::RenderPanels::run_local_requests /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1551<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::render_tracks /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:471<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::run_operation /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:325<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::process_request /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:316<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::process_connection /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:240<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::request_loop /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:229<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::run /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:160<br class="gmail_msg"><br>STACK toplevel t/04.remoteserver.t:81<br class="gmail_msg"><br>-------------------------------------<br class="gmail_msg"><br><br class="gmail_msg"><br>Use of uninitialized value in numeric gt (>) at t/04.remoteserver.t line 136.<br class="gmail_msg"><br>RenderPanels error:<br class="gmail_msg"><br>------------- EXCEPTION -------------<br class="gmail_msg"><br>MSG: The requested glyph class, ``span'' is not available: Attempt to reload Bio/Graphics/Glyph/<a href="http://span.pm" rel="noreferrer" class="gmail_msg" target="_blank">span.pm</a> aborted.<br class="gmail_msg"><br>Compilation failed in require at (eval 138) line 2, <> line 132.<br class="gmail_msg"><br><br class="gmail_msg"><br>STACK Bio::Graphics::Glyph::Factory::make_glyph /usr/share/perl5/Bio/Graphics/Glyph/Factory.pm:342<br class="gmail_msg"><br>STACK Bio::Graphics::Glyph::add_feature /usr/share/perl5/Bio/Graphics/Glyph.pm:424<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::RenderPanels::add_features_to_track /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1869<br class="gmail_msg"><br>STACK (eval) /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1597<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::RenderPanels::run_local_requests /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1551<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::render_tracks /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:471<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::run_operation /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:325<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::process_request /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:316<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::process_connection /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:240<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::request_loop /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:229<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::run /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:160<br class="gmail_msg"><br>STACK toplevel t/04.remoteserver.t:81<br class="gmail_msg"><br>-------------------------------------<br class="gmail_msg"><br><br class="gmail_msg"><br>Use of uninitialized value in numeric gt (>) at t/04.remoteserver.t line 136.<br class="gmail_msg"><br>RenderPanels error:<br class="gmail_msg"><br>------------- EXCEPTION -------------<br class="gmail_msg"><br>MSG: The requested glyph class, ``span'' is not available: Attempt to reload Bio/Graphics/Glyph/<a href="http://span.pm" rel="noreferrer" class="gmail_msg" target="_blank">span.pm</a> aborted.<br class="gmail_msg"><br>Compilation failed in require at (eval 138) line 2, <> line 132.<br class="gmail_msg"><br><br class="gmail_msg"><br>STACK Bio::Graphics::Glyph::Factory::make_glyph /usr/share/perl5/Bio/Graphics/Glyph/Factory.pm:342<br class="gmail_msg"><br>STACK Bio::Graphics::Glyph::add_feature /usr/share/perl5/Bio/Graphics/Glyph.pm:424<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::RenderPanels::add_features_to_track /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1869<br class="gmail_msg"><br>STACK (eval) /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1597<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::RenderPanels::run_local_requests /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1551<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::render_tracks /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:471<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::run_operation /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:325<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::process_request /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:316<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::process_connection /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:240<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::request_loop /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:229<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::Slave::run /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render/Slave.pm:160<br class="gmail_msg"><br>STACK toplevel t/04.remoteserver.t:81<br class="gmail_msg"><br>-------------------------------------<br class="gmail_msg"><br><br class="gmail_msg"><br>Use of uninitialized value in numeric gt (>) at t/04.remoteserver.t line 136.<br class="gmail_msg"><br>t/04.remoteserver.t .......<br class="gmail_msg"><br>1..43<br class="gmail_msg"><br>ok 1<br class="gmail_msg"><br>ok 2<br class="gmail_msg"><br>ok 3<br class="gmail_msg"><br>ok 4<br class="gmail_msg"><br>ok 5<br class="gmail_msg"><br>ok 6<br class="gmail_msg"><br>ok 7<br class="gmail_msg"><br>ok 8<br class="gmail_msg"><br>ok 9<br class="gmail_msg"><br>ok 10<br class="gmail_msg"><br>not ok 11<br class="gmail_msg"><br># Failed test 11 in t/04.remoteserver.t at line 136 fail #2<br class="gmail_msg"><br>ok 12<br class="gmail_msg"><br>ok 13<br class="gmail_msg"><br>ok 14<br class="gmail_msg"><br>ok 15<br class="gmail_msg"><br>ok 16<br class="gmail_msg"><br>ok 17<br class="gmail_msg"><br>ok 18<br class="gmail_msg"><br>ok 19<br class="gmail_msg"><br>ok 20<br class="gmail_msg"><br>ok 21<br class="gmail_msg"><br>ok 22<br class="gmail_msg"><br>not ok 23<br class="gmail_msg"><br># Failed test 23 in t/04.remoteserver.t at line 136 fail #5<br class="gmail_msg"><br>ok 24<br class="gmail_msg"><br>ok 25<br class="gmail_msg"><br>ok 26<br class="gmail_msg"><br>ok 27<br class="gmail_msg"><br>ok 28<br class="gmail_msg"><br>ok 29<br class="gmail_msg"><br>ok 30<br class="gmail_msg"><br>ok 31<br class="gmail_msg"><br>ok 32<br class="gmail_msg"><br>ok 33<br class="gmail_msg"><br>ok 34<br class="gmail_msg"><br>not ok 35<br class="gmail_msg"><br># Failed test 35 in t/04.remoteserver.t at line 136 fail #8<br class="gmail_msg"><br>ok 36<br class="gmail_msg"><br>ok 37<br class="gmail_msg"><br>ok 38<br class="gmail_msg"><br>not ok 39<br class="gmail_msg"><br># Test 39 got: '2' (t/04.remoteserver.t at line 149)<br class="gmail_msg"><br>#    Expected: '4'<br class="gmail_msg"><br>ok 40<br class="gmail_msg"><br>ok 41<br class="gmail_msg"><br>Failed 6/43 subtests<br class="gmail_msg"><br>RenderPanels error:<br class="gmail_msg"><br>------------- EXCEPTION -------------<br class="gmail_msg"><br>MSG: The requested glyph class, ``span'' is not available: Attempt to reload Bio/Graphics/Glyph/<a href="http://span.pm" rel="noreferrer" class="gmail_msg" target="_blank">span.pm</a> aborted.<br class="gmail_msg"><br>Compilation failed in require at (eval 181) line 2, <> line 45.<br class="gmail_msg"><br><br class="gmail_msg"><br>STACK Bio::Graphics::Glyph::Factory::make_glyph /usr/share/perl5/Bio/Graphics/Glyph/Factory.pm:342<br class="gmail_msg"><br>STACK Bio::Graphics::Glyph::add_feature /usr/share/perl5/Bio/Graphics/Glyph.pm:424<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::RenderPanels::add_features_to_track /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1869<br class="gmail_msg"><br>STACK (eval) /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1597<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::RenderPanels::run_local_requests /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:1551<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::RenderPanels::request_panels /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/RenderPanels.pm:185<br class="gmail_msg"><br>STACK Bio::Graphics::Browser2::Render::render_deferred /build/gbrowse-2.56+dfsg/t/../lib/Bio/Graphics/Browser2/Render.pm:3608<br class="gmail_msg"><br>STACK toplevel t/05.deferredrendering.t:102<br class="gmail_msg"><br>-------------------------------------<br class="gmail_msg"><br><br class="gmail_msg"><br>t/05.deferredrendering.t ..<br class="gmail_msg"><br>1..19<br class="gmail_msg"><br>ok 1<br class="gmail_msg"><br>ok 2<br class="gmail_msg"><br>ok 3<br class="gmail_msg"><br>ok 4<br class="gmail_msg"><br>not ok 5<br class="gmail_msg"><br># Test 5 got: 'ERROR' (t/05.deferredrendering.t at line 124)<br class="gmail_msg"><br>#   Expected: 'AVAILABLE'<br class="gmail_msg"><br>ok 6<br class="gmail_msg"><br>ok 7<br class="gmail_msg"><br>ok 8<br class="gmail_msg"><br>ok 9<br class="gmail_msg"><br>ok 10<br class="gmail_msg"><br>ok 11<br class="gmail_msg"><br>ok 12<br class="gmail_msg"><br>ok 13<br class="gmail_msg"><br>not ok 14<br class="gmail_msg"><br># Test 14 got: 'ERROR AVAILABLE AVAILABLE AVAILABLE AVAILABLE' (t/05.deferredrendering.t at line 130)<br class="gmail_msg"><br>#    Expected: 'AVAILABLE AVAILABLE AVAILABLE AVAILABLE AVAILABLE'<br class="gmail_msg"><br>ok 15<br class="gmail_msg"><br>ok 16<br class="gmail_msg"><br>ok 17<br class="gmail_msg"><br>ok 18<br class="gmail_msg"><br>ok 19<br class="gmail_msg"><br>Failed 2/19 subtests<br class="gmail_msg"><br>t/06.featuresearch.t ......<br class="gmail_msg"><br>[..]<br class="gmail_msg"><br>Test Summary Report<br class="gmail_msg"><br>-------------------<br class="gmail_msg"><br>t/03.render.t           (Wstat: 65280 Tests: 41 Failed: 0)<br class="gmail_msg"><br>  Non-zero exit status: 255<br class="gmail_msg"><br>  Parse errors: Bad plan.  You planned 150 tests but ran 41.<br class="gmail_msg"><br>t/04.remoteserver.t     (Wstat: 0 Tests: 41 Failed: 4)<br class="gmail_msg"><br>  Failed tests:  11, 23, 35, 39<br class="gmail_msg"><br>  Parse errors: Bad plan.  You planned 43 tests but ran 41.<br class="gmail_msg"><br>t/05.deferredrendering.t (Wstat: 0 Tests: 19 Failed: 2)<br class="gmail_msg"><br>  Failed tests:  5, 14<br class="gmail_msg"><br>Files=10, Tests=337, 24 wallclock secs ( 0.08 usr  0.02 sys +  9.06 cusr  0.96 csys = 10.12 CPU)<br class="gmail_msg"><br>Result: FAIL<br class="gmail_msg"><br>Failed 3/10 test programs. 6/337 subtests failed.<br class="gmail_msg"><br><br class="gmail_msg"><br><br class="gmail_msg"><br>Wild guess: Is this some incompatibility with Bio::Graphics?<br class="gmail_msg"><br>We have 2.40, if this helps.<br class="gmail_msg"><br><br class="gmail_msg"><br><br class="gmail_msg"><br>Cheers,<br class="gmail_msg"><br>gregor<br class="gmail_msg"><br><br class="gmail_msg"><br>--<br class="gmail_msg"><br> .''`.  <a href="https://info.comodo.priv.at/" rel="noreferrer" class="gmail_msg" target="_blank">https://info.comodo.priv.at/</a> - Debian Developer <a href="https://www.debian.org" rel="noreferrer" class="gmail_msg" target="_blank">https://www.debian.org</a><br class="gmail_msg"><br> : :' : OpenPGP fingerprint D1E1 316E 93A7 60A8 104D  85FA BB3A 6801 8649 AA06<br class="gmail_msg"><br> `. `'  Member of VIBE!AT & SPI, fellow of the Free Software Foundation Europe<br class="gmail_msg"><br>   `-   NP: Pink Floyd: Young Lust<br class="gmail_msg"><br></blockquote></div></div><div dir="ltr">-- <br></div><div data-smartmail="gmail_signature">Written on my cell phone. Anything that seems odd is the fault of auto-correct. </div>