[SCM] Gerris Flow Solver branch, upstream, updated. b3aa46814a06c9cb2912790b23916ffb44f1f203
Stephane Popinet
popinet at users.sf.net
Fri May 15 02:54:21 UTC 2009
The following commit has been merged in the upstream branch:
commit 8dc20845837b8ff649f866d1774400c52270476a
Author: Stephane Popinet <popinet at users.sf.net>
Date: Tue Apr 24 17:09:50 2007 +1000
Moved 'shear' example to test cases
darcs-hash:20070424070950-d4795-d6c644626dea2908c8b3e1a3d44656ffcc72275a.gz
diff --git a/doc/examples/Makefile.am b/doc/examples/Makefile.am
index 0309f77..5593758 100644
--- a/doc/examples/Makefile.am
+++ b/doc/examples/Makefile.am
@@ -2,7 +2,6 @@
EXAMPLES = \
cylinder \
- shear \
rt \
boussinesq \
tangaroa \
diff --git a/doc/examples/shear/circle.gts b/doc/examples/shear/circle.gts
deleted file mode 100644
index ac64f17..0000000
--- a/doc/examples/shear/circle.gts
+++ /dev/null
@@ -1,6591 +0,0 @@
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-666 2880 2414
-3208 1286 3248
-2403 2476 255
-3249 3250 2889
-1699 116 3251
-3252 2067 3018
-2885 884 2947
-2166 3239 3253
-1523 2864 2953
-3241 1427 2483
-176 2726 3124
-1889 820 1747
-3238 912 1009
-453 834 1468
-3254 2366 2548
-1737 3196 2453
-2728 2819 2526
-2725 1711 2956
-3211 3255 3002
-1634 2636 2782
-3217 2633 3163
-1380 684 3197
-1912 2692 3041
-1929 2857 857
-2920 3045 3149
-1534 2835 3102
-3126 3132 1814
-265 2501 3039
-1019 2974 3256
-3246 2992 2504
-312 708 2324
-2101 2580 2129
-3015 821 1829
-3181 3108 2555
-1012 3251 3147
-1270 2931 2731
-1962 2357 320
-3177 3114 2447
-2952 3219 895
-3116 3179 2841
-1670 1518 603
-3158 2546 2398
-2783 2928 1499
-2993 2283 3140
-3141 3121 3020
-2301 418 3225
-3245 2908 3257
-3130 2215 1167
-2077 2876 2814
-273 1075 2639
-3258 1860 2444
-773 3103 3195
-1050 3259 182
-362 2793 1161
-1704 3128 2060
-3040 1777 3260
-3061 3007 1787
-1154 2190 3198
-2584 3261 2183
-3260 3221 2115
-3142 3257 479
-1201 900 2944
-2941 3058 2766
-3091 2523 2982
-1280 2368 2813
-688 2402 3079
-2276 2831 1282
-1466 3182 275
-3038 2329 2591
-3098 100 2603
-2438 1709 3262
-686 1261 2635
-3263 3264 1537
-2256 172 839
-598 2446 3206
-2983 2882 2709
-833 2662 1846
-2681 729 3101
-889 2622 1799
-1715 1886 2955
-2225 1674 719
-1474 513 3265
-1338 2004 3266
-2855 1336 3053
-1882 3165 1898
-860 2883 2005
-2533 3074 1068
-2012 2866 439
-1362 1506 1324
-2771 3111 3078
-3145 1304 346
-103 246 2868
-2985 3267 727
-731 3164 2640
-191 2810 1621
-3017 3268 250
-1272 3269 3247
-2856 1326 2578
-2871 2741 2691
-1702 1273 149
-1199 278 3270
-1493 1106 2910
-2445 3271 3272
-1406 2922 3273
-396 3135 2529
-2184 3010 1862
-2700 2408 580
-2988 357 3099
-447 3036 3175
-347 2387 2139
-3146 2498 3144
-808 235 62
-1571 3252 2051
-3192 2773 3237
-3133 3035 2009
-3274 701 1228
-3234 3199 2084
-2823 3000 3235
-2361 341 3249
-3185 2946 3275
-2989 2609 1224
-3276 2616 2180
-3259 2354 1733
-2998 903 2224
-146 3266 2707
-464 1577 2524
-2309 2200 3277
-3122 1212 2642
-656 2758 3243
-280 3229 2542
-3278 2943 2090
-3279 3215 1712
-752 3067 2181
-458 1880 3212
-2356 1235 236
-2737 139 2958
-3154 966 1683
-601 3273 2907
-2477 1599 1088
-2231 1179 3159
-3156 2763 2554
-1906 1152 3160
-3280 2541 394
-768 2647 1667
-2346 3270 3280
-2549 1917 2471
-1778 468 1850
-1263 2053 1327
-2213 2159 925
-3269 2574 3254
-1933 2284 515
-2674 3281 2750
-1916 1813 717
-1836 3162 2158
-3089 2712 3117
-1797 519 122
-2962 3209 2995
-2530 3282 3276
-3183 3268 2909
-3153 1056 2788
-2234 2666 1753
-1275 923 2735
-899 3283 2456
-112 3284 2891
-2743 1954 2173
-612 1241 1864
-120 60 1622
-1719 2148 818
-2842 3274 2427
-1877 2729 3285
-970 1531 765
-1374 1140 3286
-3173 3068 1308
-3253 3287 2534
-2913 916 1762
-1589 2843 3203
-2314 3174 3288
-2140 387 2521
-1815 654 2095
-2257 2520 137
-1149 2730 3289
-3290 2673 2749
-2196 2030 1145
-164 3057 3139
-624 2450 685
-1559 2078 1618
-3184 3275 1384
-3277 2744 3093
-3284 3066 3171
-3250 48 2890
-1133 2854 607
-3255 3161 3191
-3265 3278 3009
-3256 181 882
-2326 2454 3291
-2615 2249 2565
-3248 560 3216
-3281 207 3026
-340 1202 46
-3272 2987 510
-2872 1628 2064
-1668 1970 2308
-2120 2991 3292
-2104 3143 1433
-2789 3293 3232
-51 2802 3014
-2344 2265 3293
-2949 2711 2969
-504 3222 2576
-2759 1977 1442
-3151 322 3271
-3285 2873 694
-958 3263 1351
-2126 2704 1200
-424 1920 3290
-3282 104 2617
-417 3054 1546
-2131 2132 998
-3287 2762 1136
-1107 2911 873
-2211 3258 3288
-796 3084 1125
-3236 252 2899
-3150 529 3125
-2736 787 3291
-738 2950 3283
-1871 2353 3190
-1945 3120 2742
-1661 3090 1116
-3189 471 674
-254 1447 3155
-2325 3005 2817
-3294 3008 770
-3100 2990 1225
-2901 2502 623
-703 1542 1485
-2776 1644 817
-1904 3262 1769
-2068 271 2297
-853 1475 3294
-2253 1823 778
-2091 2178 1554
-3292 2724 2420
-2409 2754 3279
-2480 2775 3267
-2341 968 455
-356 2017 967
-3286 3200 1993
-2174 2571 2195
-2970 1648 2267
-2914 1735 702
-2940 3227 3193
-1143 1663 3107
-2772 2505 2170
-1763 3086 3136
-610 3166 2827
-3261 2175 2270
-334 1552 3052
-2797 3187 3056
-926 1404 3169
-1811 3244 3264
-440 1173 2119
-3242 2718 930
-3176 1418 634
-2710 3289 1245
-3023 1087 119
diff --git a/doc/examples/shear/shear.gfs b/doc/examples/shear/shear.gfs
deleted file mode 100644
index 7c9dec6..0000000
--- a/doc/examples/shear/shear.gfs
+++ /dev/null
@@ -1,103 +0,0 @@
-# Title: Time-reversed VOF advection in a shear flow
-#
-# Description:
-#
-# A test case initially presented by Rudman (Int. J. Num. Meth. Fluids, 1997).
-# A circular patch of tracer is advected in a vortical shear flow. At t = 2.5
-# the flow direction is reversed. An exact advection scheme would restore the
-# initial circular shape at t = 5.
-#
-# The VOF (Volume-Of-Fluid) advection scheme is not exact. The initial, intermediate
-# and final shape of the interface are represented on Figure \ref{advection}.
-# Figure \ref{error} illustrates the error between the initial and final shapes. The
-# corresponding error norms are given in Table \ref{norms}.
-#
-# Adaptive refinement is used with the gradient of the volume fraction as criterion.
-# Eight levels of refinement are used on the interfaces and six away from the interface.
-#
-# \begin{figure}[htbp]
-# \caption{\label{advection}Volume fraction field at times (a) 0, (b) 2.5 and (c) 5.}
-# \begin{center}
-# \begin{tabular}{ccc}
-# \includegraphics[width=0.3\hsize]{t-0.eps} &
-# \includegraphics[width=0.3\hsize]{t-2.5.eps} &
-# \includegraphics[width=0.3\hsize]{t-5.eps} \\
-# (a) & (b) & (c)
-# \end{tabular}
-# \end{center}
-# \end{figure}
-#
-# \begin{figure}[htbp]
-# \caption{\label{error}Difference between the initial and final volume fraction fields.}
-# \begin{center}
-# \includegraphics[width=0.4\hsize]{dt-5.eps}
-# \end{center}
-# \end{figure}
-#
-# \begin{table}[htbp]
-# \caption{\label{norms}Norms of the error between the initial and final fields.}
-# \begin{center}
-# \begin{tabular}{lll}
-# $||^1$ & $||^2$ & $||^\infty$ \\
-# \input{norms.tex}
-# \end{tabular}
-# \end{center}
-# \end{table}
-#
-# Author: St\'ephane Popinet
-# Command: gerris2D shear.gfs
-# Version: 0.6.4
-# Required files: circle.gts
-# Running time: 2 minutes
-# Generated files: t-0.eps t-2.5.eps t-5.eps dt-5.eps norms.tex
-#
-# The type of the simulation is GfsAdvection which only solves the advection
-# of passive tracers.
-1 0 GfsAdvection GfsBox GfsGEdge {} {
- Time { end = 5 }
- Refine 8
-
- # Add tracer T, using a VOF advection scheme.
- # The default scheme is a Van-Leer limited, second-order upwind scheme.
- VariableTracerVOF {} T
-
- # Initialize T as the volume fraction of each cell contained inside the
- # volume defined by circle.gts
- InitFraction {} T circle.gts
-
- # Initialize U and V with the vortical shear flow field
- Init {} {
- U = sin((x + 0.5)*M_PI)*cos((y + 0.5)*M_PI)
- V = -cos((x + 0.5)*M_PI)*sin((y + 0.5)*M_PI)
- }
-
- # At t = 2.5 re-initialize U and V with the reversed flow field
- Init { start = 2.5 } { U = -U V = -V }
-
- # Adapt the mesh dynamically so that at any time the maximum of the gradient
- # of T is less than 1e-2 per cell length
- AdaptGradient { istep = 1 } { cmax = 1e-2 maxlevel = 8 minlevel = 6 } T
-
- # Output progress report on standard error
- OutputProgress { istep = 1 } stderr
-
- OutputPPM { start = 0 } { convert ppm:- t-0.eps } { v = T }
- OutputPPM { start = 2.5 } { convert ppm:- t-2.5.eps } { v = T }
- OutputPPM { start = 5 } { convert ppm:- t-5.eps } { v = T }
-
- # Add a new variable
- Variable {} Tref
-
- # Initialize Tref with the initial shape
- InitFraction { start = end } Tref circle.gts
-
- # Output the norms of the difference between T and Tref, stores that into
- # new variable DT
- OutputErrorNorm { start = end } { awk '{print $5 " & " $7 " & " $9}' > norms.tex } { v = T } {
- s = Tref v = DT
- }
-
- OutputPPM { start = end } { convert ppm:- dt-5.eps } { v = DT }
- OutputTiming { start = end } stderr
-}
-GfsBox {}
diff --git a/doc/examples/template.tex b/doc/examples/template.tex
index ca11e05..6f7037b 100644
--- a/doc/examples/template.tex
+++ b/doc/examples/template.tex
@@ -47,7 +47,6 @@ The usefulness and quality of this document very much depend on the contribution
\input{cylinder/cylinder.tex}
\input{cylinder/heated/heated.tex}
-\input{shear/shear.tex}
\input{rt/rt.tex}
\input{boussinesq/boussinesq.tex}
\input{logo/logo.tex}
diff --git a/test/Makefile.am b/test/Makefile.am
index 6a569d8..508ff22 100644
--- a/test/Makefile.am
+++ b/test/Makefile.am
@@ -17,7 +17,8 @@ TESTDIRS = \
couette \
plate \
dumbell \
- nz
+ nz \
+ shear
EXTRA_DIST = \
template.tex \
diff --git a/test/check.py b/test/check.py
index 4a6b307..79a5cbd 100644
--- a/test/check.py
+++ b/test/check.py
@@ -15,6 +15,8 @@ class Curve:
self.read(open(f,'r'),x,y)
def value(self,x):
l,u = 0,len(self.l)-1
+ if u == l:
+ return self.l[u][1]
while u - l > 1:
i = (u + l)/2
if self.l[i][0] > x:
diff --git a/test/shear/norms.ref b/test/shear/norms.ref
new file mode 100644
index 0000000..81aa016
--- /dev/null
+++ b/test/shear/norms.ref
@@ -0,0 +1 @@
+T time: 5 first: 2.553e-03 second: 4.056e-02 infty: 1.000e+00 bias: -1.594e-03
diff --git a/test/shear/shear.gfs b/test/shear/shear.gfs
new file mode 100644
index 0000000..024b3cc
--- /dev/null
+++ b/test/shear/shear.gfs
@@ -0,0 +1,98 @@
+# Title: Time-reversed VOF advection in a shear flow
+#
+# Description:
+#
+# A test case initially presented by Rudman \cite{rudman97}.
+# A circular patch of tracer is advected in a vortical shear flow. At t = 2.5
+# the flow direction is reversed. An exact advection scheme would restore the
+# initial circular shape at t = 5.
+#
+# The VOF (Volume-Of-Fluid) advection scheme is not exact. The initial, intermediate
+# and final shape of the interface are represented on Figure \ref{advection}.
+# Figure \ref{error} illustrates the error between the initial and final shapes. The
+# corresponding error norms are given in Table \ref{norms}.
+#
+# Adaptive refinement is used with the gradient of the volume fraction as criterion.
+# Eight levels of refinement are used on the interfaces and six away from the interface.
+#
+# \begin{figure}[htbp]
+# \caption{\label{advection}Volume fraction field at times (a) 0, (b) 2.5 and (c) 5.}
+# \begin{center}
+# \begin{tabular}{ccc}
+# \includegraphics[width=0.3\hsize]{t-0.eps} &
+# \includegraphics[width=0.3\hsize]{t-2.5.eps} &
+# \includegraphics[width=0.3\hsize]{t-5.eps} \\
+# (a) & (b) & (c)
+# \end{tabular}
+# \end{center}
+# \end{figure}
+#
+# \begin{figure}[htbp]
+# \caption{\label{error}Difference between the initial and final volume fraction fields.}
+# \begin{center}
+# \includegraphics[width=0.4\hsize]{dt-5.eps}
+# \end{center}
+# \end{figure}
+#
+# \begin{table}[htbp]
+# \caption{\label{norms}Norms of the error between the initial and final fields. The
+# reference values are given in blue.}
+# \begin{center}
+# \begin{tabular}{|c|c|c|}\hline
+# $L_1$ & $L_2$ & $L_\infty$ \\ \hline
+# \input{norms.tex}
+# \end{tabular}
+# \end{center}
+# \end{table}
+#
+# Author: St\'ephane Popinet
+# Command: sh shear.sh shear.gfs
+# Version: 1.1.0
+# Required files: shear.sh norms.ref
+# Running time: 2 minutes
+# Generated files: t-0.eps t-2.5.eps t-5.eps dt-5.eps norms norms.tex
+#
+# The type of the simulation is GfsAdvection which only solves the advection
+# of passive tracers.
+1 0 GfsAdvection GfsBox GfsGEdge {} {
+ Time { end = 5 }
+ Refine 8
+
+ # Add tracer T, using a VOF advection scheme.
+ # The default scheme is a Van-Leer limited, second-order upwind scheme.
+ VariableTracerVOF {} T
+
+ InitFraction {} T (ellipse (0, -.236338, 0.2, 0.2))
+
+ # Initialize U and V with the vortical shear flow field
+ Init {} {
+ U = sin((x + 0.5)*M_PI)*cos((y + 0.5)*M_PI)
+ V = -cos((x + 0.5)*M_PI)*sin((y + 0.5)*M_PI)
+ }
+
+ # At t = 2.5 re-initialize U and V with the reversed flow field
+ Init { start = 2.5 } { U = -U V = -V }
+
+ # Adapt the mesh dynamically so that at any time the maximum of the gradient
+ # of T is less than 1e-2 per cell length
+ AdaptGradient { istep = 1 } { cmax = 1e-2 maxlevel = 8 minlevel = 6 } T
+
+ OutputPPM { start = 0 } { convert ppm:- t-0.eps } { v = T }
+ OutputPPM { start = 2.5 } { convert ppm:- t-2.5.eps } { v = T }
+ OutputPPM { start = 5 } { convert ppm:- t-5.eps } { v = T }
+
+ # Add a new variable
+ Variable {} Tref
+
+ # Initialize Tref with the initial shape
+ InitFraction { start = end } Tref (ellipse (0, -.236338, 0.2, 0.2))
+
+ # Output the norms of the difference between T and Tref, stores that into
+ # new variable DT
+ OutputErrorNorm { start = end } norms { v = T } {
+ s = Tref v = DT
+ }
+
+ OutputPPM { start = end } { convert ppm:- dt-5.eps } { v = DT }
+}
+GfsBox {}
diff --git a/test/shear/shear.sh b/test/shear/shear.sh
new file mode 100644
index 0000000..5ced3fb
--- /dev/null
+++ b/test/shear/shear.sh
@@ -0,0 +1,24 @@
+if ! $donotrun; then
+ if gerris2D $1; then :
+ else
+ exit 1
+ fi
+fi
+
+if awk '{print $5 " & " $7 " & " $9 "\\\\"}' < norms > norms.tex && \
+ awk '{print "{\\color{blue}" $5 "} & {\\color{blue}" $7 "} & {\\color{blue}" $9 "}"}' < norms.ref >> norms.tex ; then :
+else
+ exit 1
+fi
+
+if cat <<EOF | python ; then :
+from check import *
+from sys import *
+if (Curve('norms',3,5) - Curve('norms.ref',3,5)).max() > 0. or\
+ (Curve('norms',3,7) - Curve('norms.ref',3,7)).max() > 0. or\
+ (Curve('norms',3,9) - Curve('norms.ref',3,9)).max() > 0.:
+ exit(1)
+EOF
+else
+ exit 1
+fi
diff --git a/test/template.tex b/test/template.tex
index c64683b..a9b89cd 100644
--- a/test/template.tex
+++ b/test/template.tex
@@ -44,6 +44,7 @@ current stable branch of the version-controlled source code.
\section{Advection}
\input{advection/advection.tex}
+\input{shear/shear.tex}
\section{Euler}
diff --git a/test/tests.bib b/test/tests.bib
index aeec30e..ac62596 100644
--- a/test/tests.bib
+++ b/test/tests.bib
@@ -140,6 +140,16 @@
pages= {81-85}
}
+ at article{rudman97,
+ title={{VOLUME-TRACKING METHODS FOR INTERFACIAL FLOW CALCULATIONS}},
+ author={RUDMAN, M.},
+ journal={International Journal for Numerical Methods in Fluids},
+ volume={24},
+ number={7},
+ pages={671--691},
+ year={1997}
+}
+
@TechReport{rutgers-waves,
author = {E. Curchitser},
title = {Waves in a circular basin},
--
Gerris Flow Solver
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