[yade] branch master updated (72c496c -> 45816fd)

[Anton Gladky]

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gladk pushed a change to branch master
in repository yade.

      from  72c496c   Update changelog.
      adds  8448883   Imported Upstream version 1.05.0
       new  862dacb   Merge tag 'upstream/1.05.0'
       new  82b3047   Do not use clang explicitly.
       new  2f28ccc   Remove -ftrack-macro-expansion=0 option.
       new  45816fd   Update changelog.

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repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
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Summary of changes:
 .gitignore                                         |    5 +-
 CMakeLists.txt                                     |    8 +-
 ChangeLog                                          |   76 ++
 RELEASE                                            |    2 +-
 core/Clump.cpp                                     |   26 +-
 core/Clump.hpp                                     |    2 +-
 core/Scene.hpp                                     |    4 +-
 debian/changelog                                   |    8 +
 debian/control                                     |    1 -
 debian/rules                                       |    7 -
 doc/references.bib                                 |   11 +
 doc/sphinx/installation.rst                        |   26 +-
 doc/sphinx/references.bib                          |   11 +
 doc/sphinx/user.rst                                |  105 +--
 doc/sphinx/yadeSphinx.py                           |    2 +-
 examples/LudingPM.py                               |   97 ++-
 examples/clumps/apply-buoyancy-clumps.py           |  125 ++-
 examples/clumps/replaceByClumps-example.py         |    4 +-
 examples/jointedCohesiveFrictionalPM/README        |    3 +
 examples/jointedCohesiveFrictionalPM/gravityBis.py |  128 +++
 ...entificationSpheresOnJoint.py => identifBis.py} |  144 ++--
 .../identificationSpheresOnJoint.py                |    2 +-
 examples/packs/packs.py                            |    2 +-
 examples/polyhedra/ball.py                         |   47 ++
 examples/polyhedra/free-fall.py                    |   58 ++
 examples/polyhedra/irregular.py                    |   63 ++
 examples/polyhedra/wall.py                         |   72 ++
 examples/test/unstructuredGrid.py                  |   38 +
 examples/test/vtkPeriodicCell.py                   |   23 +
 examples/{polyhedra => tetra}/oneTetra.py          |    2 +-
 .../oneTetra.py => tetra/oneTetraPoly.py}          |    4 +-
 examples/{polyhedra => tetra}/twoTetras.py         |    1 -
 .../twoTetras.py => tetra/twoTetrasPoly.py}        |   21 +-
 gui/CMakeLists.txt                                 |    2 +-
 gui/qt4/GLViewer.cpp                               |  331 +-------
 gui/qt4/GLViewerDisplay.cpp                        |  296 +++++++
 gui/qt4/GLViewerMouse.cpp                          |  112 +++
 lib/pyutil/README                                  |    2 +-
 lib/pyutil/numpy_boost.hpp                         |  119 ++-
 lib/triangulation/FlowBoundingSphere.hpp           |    7 +
 pkg/common/KinematicEngines.cpp                    |    1 +
 pkg/dem/ConcretePM.cpp                             |   14 +-
 pkg/dem/FlowEngine.cpp                             |   43 +-
 pkg/dem/FlowEngine.hpp                             |   52 ++
 pkg/dem/JointedCohesiveFrictionalPM.cpp            |   20 +-
 pkg/dem/JointedCohesiveFrictionalPM.hpp            |    4 +-
 pkg/dem/LudingPM.cpp                               |   69 +-
 pkg/dem/LudingPM.hpp                               |    9 +-
 pkg/dem/Polyhedra.cpp                              |  427 ++++++++++
 pkg/dem/Polyhedra.hpp                              |  274 +++++++
 pkg/dem/Polyhedra_Ig2.cpp                          |  305 ++++++++
 pkg/dem/Polyhedra_Ig2.hpp                          |   71 ++
 pkg/dem/Polyhedra_splitter.cpp                     |  109 +++
 pkg/dem/Polyhedra_splitter.hpp                     |   33 +
 pkg/dem/Polyhedra_support.cpp                      |  817 ++++++++++++++++++++
 pkg/dem/Shop.hpp                                   |    8 +-
 pkg/dem/Shop_01.cpp                                |  455 +++++++++++
 pkg/dem/{Shop.cpp => Shop_02.cpp}                  |  400 +---------
 pkg/dem/TesselationWrapper.hpp                     |    2 +-
 pkg/dem/Tetra.cpp                                  |    4 +-
 pkg/dem/VTKRecorder.cpp                            |  190 ++++-
 pkg/dem/VTKRecorder.hpp                            |    4 +-
 py/CMakeLists.txt                                  |    6 +
 py/_polyhedra_utils.cpp                            |  374 +++++++++
 py/_utils.cpp                                      |    4 +-
 py/export.py                                       |   35 +-
 py/polyhedra_utils.py                              |  102 +++
 py/utils.py                                        |   68 +-
 py/wrapper/yadeWrapper.cpp                         |   32 +-
 69 files changed, 4786 insertions(+), 1143 deletions(-)
 create mode 100644 examples/jointedCohesiveFrictionalPM/gravityBis.py
 copy examples/jointedCohesiveFrictionalPM/{identificationSpheresOnJoint.py => identifBis.py} (54%)
 create mode 100644 examples/polyhedra/ball.py
 create mode 100644 examples/polyhedra/free-fall.py
 create mode 100644 examples/polyhedra/irregular.py
 create mode 100644 examples/polyhedra/wall.py
 mode change 100755 => 100644 examples/simple-scene/simple-scene-plot.py
 create mode 100644 examples/test/unstructuredGrid.py
 create mode 100644 examples/test/vtkPeriodicCell.py
 copy examples/{polyhedra => tetra}/oneTetra.py (94%)
 rename examples/{polyhedra/oneTetra.py => tetra/oneTetraPoly.py} (89%)
 copy examples/{polyhedra => tetra}/twoTetras.py (98%)
 rename examples/{polyhedra/twoTetras.py => tetra/twoTetrasPoly.py} (90%)
 create mode 100644 gui/qt4/GLViewerDisplay.cpp
 create mode 100644 gui/qt4/GLViewerMouse.cpp
 create mode 100644 pkg/dem/Polyhedra.cpp
 create mode 100644 pkg/dem/Polyhedra.hpp
 create mode 100644 pkg/dem/Polyhedra_Ig2.cpp
 create mode 100644 pkg/dem/Polyhedra_Ig2.hpp
 create mode 100644 pkg/dem/Polyhedra_splitter.cpp
 create mode 100644 pkg/dem/Polyhedra_splitter.hpp
 create mode 100644 pkg/dem/Polyhedra_support.cpp
 create mode 100644 pkg/dem/Shop_01.cpp
 rename pkg/dem/{Shop.cpp => Shop_02.cpp} (56%)
 create mode 100644 py/_polyhedra_utils.cpp
 create mode 100644 py/polyhedra_utils.py
 mode change 100755 => 100644 scripts/erskine3.py
 mode change 100755 => 100644 scripts/hackett.py
 mode change 100755 => 100644 scripts/linkdeps.py
 mode change 100755 => 100644 scripts/py2wiki.py
 mode change 100755 => 100644 scripts/rename-class.py

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