[mmdb] branch master updated (67c053d -> eb83ed6)
Frédéric-Emmanuel Picca
picca at moszumanska.debian.org
Wed Dec 31 09:32:43 UTC 2014
This is an automated email from the git hooks/post-receive script.
picca pushed a change to branch master
in repository mmdb.
from 67c053d autoreconf for ppc64el thanks to Breno Leitao
new 63625d7 update the watch file to reflect the new .tar.gz filename
new f3af8fb Imported Upstream version 2.0.1
new 47aec56 Merge tag 'upstream/2.0.1'
new 43f9503 update the packaging for the 2.0.1 version
new 7cb6e6f update the changelog
new 443a037 Standards-Versions bump to 3.9.6
new 5910244 fix the control file
new eb83ed6 release
The 8 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
Makefile.am | 56 +-
Makefile.in | 482 +--
README | 99 +-
aclocal.m4 | 276 +-
configure | 51 +-
configure.ac | 6 +-
debian/changelog | 11 +
debian/control | 12 +-
debian/copyright | 6 +-
debian/libmmdb-dev.install | 4 -
debian/libmmdb0.install | 1 -
debian/{libmmdb0.docs => libmmdb2-0.docs} | 0
debian/libmmdb2-0.install | 1 +
debian/libmmdb2-dev.install | 4 +
debian/rules | 2 +-
debian/watch | 2 +-
mmdb/bfgs_min.cpp | 936 -----
mmdb/bfgs_min.h | 257 --
mmdb/file_.cpp | 1857 ----------
mmdb/file_.h | 302 --
mmdb/linalg_.cpp | 987 ------
mmdb/linalg_.h | 233 --
mmdb/machine_.cpp | 148 -
mmdb/math_.cpp | 199 --
mmdb/math_.h | 73 -
mmdb/mattype_.cpp | 2116 ------------
mmdb/mattype_.h | 659 ----
mmdb/mmdb_align.cpp | 1219 -------
mmdb/mmdb_align.h | 189 -
mmdb/mmdb_atom.cpp | 3495 -------------------
mmdb/mmdb_atom.h | 739 ----
mmdb/mmdb_bondmngr.cpp | 125 -
mmdb/mmdb_chain.cpp | 2568 --------------
mmdb/mmdb_chain.h | 674 ----
mmdb/mmdb_cifdefs.cpp | 122 -
mmdb/mmdb_cifdefs.h | 327 --
mmdb/mmdb_coormngr.cpp | 4360 -----------------------
mmdb/mmdb_coormngr.h | 951 -----
mmdb/mmdb_cryst.cpp | 2288 -------------
mmdb/mmdb_cryst.h | 462 ---
mmdb/mmdb_defs.h | 259 --
mmdb/mmdb_file.cpp | 3060 -----------------
mmdb/mmdb_file.h | 650 ----
mmdb/mmdb_graph.cpp | 2460 -------------
mmdb/mmdb_graph.h | 484 ---
mmdb/mmdb_manager.cpp | 392 ---
mmdb/mmdb_manager.h | 122 -
mmdb/mmdb_mask.cpp | 246 --
mmdb/mmdb_mmcif.cpp | 3671 --------------------
mmdb/mmdb_mmcif.h | 2129 ------------
mmdb/mmdb_model.cpp | 5313 ----------------------------
mmdb/mmdb_model.h | 1085 ------
mmdb/mmdb_sbase.cpp | 320 --
mmdb/mmdb_sbase.h | 142 -
mmdb/mmdb_sbase0.cpp | 3124 -----------------
mmdb/mmdb_sbase0.h | 746 ----
mmdb/mmdb_selmngr.cpp | 3393 ------------------
mmdb/mmdb_selmngr.h | 624 ----
mmdb/mmdb_symop.cpp | 1009 ------
mmdb/mmdb_symop.h | 173 -
mmdb/mmdb_tables.cpp | 750 ----
mmdb/mmdb_tables.h | 129 -
mmdb/mmdb_title.cpp | 2653 --------------
mmdb/mmdb_title.h | 734 ----
mmdb/mmdb_uddata.cpp | 537 ---
mmdb/mmdb_uddata.h | 152 -
mmdb/mmdb_utils.cpp | 1974 -----------
mmdb/mmdb_utils.h | 639 ----
mmdb/mmdb_xml.cpp | 954 ------
mmdb/mmdb_xml.h | 148 -
mmdb/random_n.cpp | 235 --
mmdb/stream_.cpp | 106 -
mmdb/stream_.h | 192 --
mmdb.pc.in => mmdb2.pc.in | 5 +-
{mmdb => mmdb2}/hybrid_36.cpp | 0
{mmdb => mmdb2}/hybrid_36.h | 0
mmdb2/mmdb_atom.cpp | 3486 +++++++++++++++++++
mmdb2/mmdb_atom.h | 732 ++++
mmdb2/mmdb_bondmngr.cpp | 121 +
{mmdb => mmdb2}/mmdb_bondmngr.h | 52 +-
mmdb2/mmdb_chain.cpp | 2575 ++++++++++++++
mmdb2/mmdb_chain.h | 662 ++++
mmdb2/mmdb_cifdefs.cpp | 369 ++
mmdb2/mmdb_cifdefs.h | 329 ++
mmdb2/mmdb_coormngr.cpp | 4347 +++++++++++++++++++++++
mmdb2/mmdb_coormngr.h | 959 ++++++
mmdb2/mmdb_cryst.cpp | 2312 +++++++++++++
mmdb2/mmdb_cryst.h | 458 +++
mmdb2/mmdb_defs.h | 271 ++
{mmdb => mmdb2}/mmdb_ficif.cpp | 81 +-
{mmdb => mmdb2}/mmdb_ficif.h | 47 +-
mmdb2/mmdb_io_file.cpp | 1873 ++++++++++
mmdb2/mmdb_io_file.h | 301 ++
mmdb2/mmdb_io_stream.cpp | 112 +
mmdb2/mmdb_io_stream.h | 193 ++
mmdb2/mmdb_machine_.cpp | 155 +
mmdb/machine_.h => mmdb2/mmdb_machine_.h | 157 +-
mmdb2/mmdb_manager.cpp | 389 +++
mmdb2/mmdb_manager.h | 124 +
mmdb2/mmdb_mask.cpp | 240 ++
{mmdb => mmdb2}/mmdb_mask.h | 76 +-
mmdb2/mmdb_math_.cpp | 203 ++
mmdb2/mmdb_math_.h | 77 +
mmdb2/mmdb_math_align.cpp | 1226 +++++++
mmdb2/mmdb_math_align.h | 195 ++
mmdb2/mmdb_math_bfgsmin.cpp | 938 +++++
mmdb2/mmdb_math_bfgsmin.h | 260 ++
mmdb2/mmdb_math_fft.cpp | 338 ++
mmdb2/mmdb_math_fft.h | 93 +
mmdb2/mmdb_math_graph.cpp | 2461 +++++++++++++
mmdb2/mmdb_math_graph.h | 494 +++
mmdb2/mmdb_math_linalg.cpp | 990 ++++++
mmdb2/mmdb_math_linalg.h | 236 ++
mmdb2/mmdb_math_rand.cpp | 241 ++
mmdb/random_n.h => mmdb2/mmdb_math_rand.h | 79 +-
mmdb2/mmdb_mattype.cpp | 2087 +++++++++++
mmdb2/mmdb_mattype.h | 652 ++++
mmdb2/mmdb_mmcif_.cpp | 3666 ++++++++++++++++++++
mmdb2/mmdb_mmcif_.h | 2146 ++++++++++++
mmdb2/mmdb_model.cpp | 5332 +++++++++++++++++++++++++++++
mmdb2/mmdb_model.h | 1073 ++++++
mmdb2/mmdb_root.cpp | 3054 +++++++++++++++++
mmdb2/mmdb_root.h | 639 ++++
{mmdb => mmdb2}/mmdb_rwbrook.cpp | 1762 +++++-----
{mmdb => mmdb2}/mmdb_rwbrook.h | 591 ++--
mmdb2/mmdb_selmngr.cpp | 3421 ++++++++++++++++++
mmdb2/mmdb_selmngr.h | 634 ++++
mmdb2/mmdb_seqsuperpose.cpp | 366 ++
mmdb2/mmdb_seqsuperpose.h | 134 +
mmdb2/mmdb_symop.cpp | 1001 ++++++
mmdb2/mmdb_symop.h | 168 +
mmdb2/mmdb_tables.cpp | 748 ++++
mmdb2/mmdb_tables.h | 127 +
mmdb2/mmdb_title.cpp | 2662 ++++++++++++++
mmdb2/mmdb_title.h | 696 ++++
mmdb2/mmdb_uddata.cpp | 534 +++
mmdb2/mmdb_uddata.h | 154 +
mmdb2/mmdb_utils.cpp | 1994 +++++++++++
mmdb2/mmdb_utils.h | 633 ++++
mmdb2/mmdb_xml_.cpp | 986 ++++++
mmdb2/mmdb_xml_.h | 162 +
141 files changed, 62841 insertions(+), 65742 deletions(-)
delete mode 100644 debian/libmmdb-dev.install
delete mode 100644 debian/libmmdb0.install
rename debian/{libmmdb0.docs => libmmdb2-0.docs} (100%)
create mode 100644 debian/libmmdb2-0.install
create mode 100644 debian/libmmdb2-dev.install
delete mode 100755 mmdb/bfgs_min.cpp
delete mode 100755 mmdb/bfgs_min.h
delete mode 100755 mmdb/file_.cpp
delete mode 100755 mmdb/file_.h
delete mode 100755 mmdb/linalg_.cpp
delete mode 100755 mmdb/linalg_.h
delete mode 100755 mmdb/machine_.cpp
delete mode 100755 mmdb/math_.cpp
delete mode 100755 mmdb/math_.h
delete mode 100755 mmdb/mattype_.cpp
delete mode 100755 mmdb/mattype_.h
delete mode 100755 mmdb/mmdb_align.cpp
delete mode 100755 mmdb/mmdb_align.h
delete mode 100755 mmdb/mmdb_atom.cpp
delete mode 100755 mmdb/mmdb_atom.h
delete mode 100755 mmdb/mmdb_bondmngr.cpp
delete mode 100755 mmdb/mmdb_chain.cpp
delete mode 100755 mmdb/mmdb_chain.h
delete mode 100755 mmdb/mmdb_cifdefs.cpp
delete mode 100755 mmdb/mmdb_cifdefs.h
delete mode 100755 mmdb/mmdb_coormngr.cpp
delete mode 100755 mmdb/mmdb_coormngr.h
delete mode 100755 mmdb/mmdb_cryst.cpp
delete mode 100755 mmdb/mmdb_cryst.h
delete mode 100755 mmdb/mmdb_defs.h
delete mode 100755 mmdb/mmdb_file.cpp
delete mode 100755 mmdb/mmdb_file.h
delete mode 100755 mmdb/mmdb_graph.cpp
delete mode 100755 mmdb/mmdb_graph.h
delete mode 100755 mmdb/mmdb_manager.cpp
delete mode 100755 mmdb/mmdb_manager.h
delete mode 100755 mmdb/mmdb_mask.cpp
delete mode 100755 mmdb/mmdb_mmcif.cpp
delete mode 100755 mmdb/mmdb_mmcif.h
delete mode 100755 mmdb/mmdb_model.cpp
delete mode 100755 mmdb/mmdb_model.h
delete mode 100755 mmdb/mmdb_sbase.cpp
delete mode 100755 mmdb/mmdb_sbase.h
delete mode 100755 mmdb/mmdb_sbase0.cpp
delete mode 100755 mmdb/mmdb_sbase0.h
delete mode 100755 mmdb/mmdb_selmngr.cpp
delete mode 100755 mmdb/mmdb_selmngr.h
delete mode 100755 mmdb/mmdb_symop.cpp
delete mode 100755 mmdb/mmdb_symop.h
delete mode 100755 mmdb/mmdb_tables.cpp
delete mode 100755 mmdb/mmdb_tables.h
delete mode 100755 mmdb/mmdb_title.cpp
delete mode 100755 mmdb/mmdb_title.h
delete mode 100755 mmdb/mmdb_uddata.cpp
delete mode 100755 mmdb/mmdb_uddata.h
delete mode 100755 mmdb/mmdb_utils.cpp
delete mode 100755 mmdb/mmdb_utils.h
delete mode 100755 mmdb/mmdb_xml.cpp
delete mode 100755 mmdb/mmdb_xml.h
delete mode 100755 mmdb/random_n.cpp
delete mode 100755 mmdb/stream_.cpp
delete mode 100755 mmdb/stream_.h
rename mmdb.pc.in => mmdb2.pc.in (81%)
rename {mmdb => mmdb2}/hybrid_36.cpp (100%)
mode change 100755 => 100644
rename {mmdb => mmdb2}/hybrid_36.h (100%)
mode change 100755 => 100644
create mode 100644 mmdb2/mmdb_atom.cpp
create mode 100644 mmdb2/mmdb_atom.h
create mode 100644 mmdb2/mmdb_bondmngr.cpp
rename {mmdb => mmdb2}/mmdb_bondmngr.h (66%)
mode change 100755 => 100644
create mode 100644 mmdb2/mmdb_chain.cpp
create mode 100644 mmdb2/mmdb_chain.h
create mode 100644 mmdb2/mmdb_cifdefs.cpp
create mode 100644 mmdb2/mmdb_cifdefs.h
create mode 100644 mmdb2/mmdb_coormngr.cpp
create mode 100644 mmdb2/mmdb_coormngr.h
create mode 100644 mmdb2/mmdb_cryst.cpp
create mode 100644 mmdb2/mmdb_cryst.h
create mode 100644 mmdb2/mmdb_defs.h
rename {mmdb => mmdb2}/mmdb_ficif.cpp (93%)
mode change 100755 => 100644
rename {mmdb => mmdb2}/mmdb_ficif.h (96%)
mode change 100755 => 100644
create mode 100644 mmdb2/mmdb_io_file.cpp
create mode 100644 mmdb2/mmdb_io_file.h
create mode 100644 mmdb2/mmdb_io_stream.cpp
create mode 100644 mmdb2/mmdb_io_stream.h
create mode 100644 mmdb2/mmdb_machine_.cpp
rename mmdb/machine_.h => mmdb2/mmdb_machine_.h (79%)
mode change 100755 => 100644
create mode 100644 mmdb2/mmdb_manager.cpp
create mode 100644 mmdb2/mmdb_manager.h
create mode 100644 mmdb2/mmdb_mask.cpp
rename {mmdb => mmdb2}/mmdb_mask.h (50%)
mode change 100755 => 100644
create mode 100644 mmdb2/mmdb_math_.cpp
create mode 100644 mmdb2/mmdb_math_.h
create mode 100644 mmdb2/mmdb_math_align.cpp
create mode 100644 mmdb2/mmdb_math_align.h
create mode 100644 mmdb2/mmdb_math_bfgsmin.cpp
create mode 100644 mmdb2/mmdb_math_bfgsmin.h
create mode 100755 mmdb2/mmdb_math_fft.cpp
create mode 100755 mmdb2/mmdb_math_fft.h
create mode 100644 mmdb2/mmdb_math_graph.cpp
create mode 100644 mmdb2/mmdb_math_graph.h
create mode 100644 mmdb2/mmdb_math_linalg.cpp
create mode 100644 mmdb2/mmdb_math_linalg.h
create mode 100644 mmdb2/mmdb_math_rand.cpp
rename mmdb/random_n.h => mmdb2/mmdb_math_rand.h (51%)
mode change 100755 => 100644
create mode 100644 mmdb2/mmdb_mattype.cpp
create mode 100644 mmdb2/mmdb_mattype.h
create mode 100644 mmdb2/mmdb_mmcif_.cpp
create mode 100644 mmdb2/mmdb_mmcif_.h
create mode 100644 mmdb2/mmdb_model.cpp
create mode 100644 mmdb2/mmdb_model.h
create mode 100644 mmdb2/mmdb_root.cpp
create mode 100644 mmdb2/mmdb_root.h
rename {mmdb => mmdb2}/mmdb_rwbrook.cpp (56%)
mode change 100755 => 100644
rename {mmdb => mmdb2}/mmdb_rwbrook.h (79%)
mode change 100755 => 100644
create mode 100644 mmdb2/mmdb_selmngr.cpp
create mode 100644 mmdb2/mmdb_selmngr.h
create mode 100755 mmdb2/mmdb_seqsuperpose.cpp
create mode 100755 mmdb2/mmdb_seqsuperpose.h
create mode 100644 mmdb2/mmdb_symop.cpp
create mode 100644 mmdb2/mmdb_symop.h
create mode 100644 mmdb2/mmdb_tables.cpp
create mode 100644 mmdb2/mmdb_tables.h
create mode 100644 mmdb2/mmdb_title.cpp
create mode 100644 mmdb2/mmdb_title.h
create mode 100644 mmdb2/mmdb_uddata.cpp
create mode 100644 mmdb2/mmdb_uddata.h
create mode 100644 mmdb2/mmdb_utils.cpp
create mode 100644 mmdb2/mmdb_utils.h
create mode 100644 mmdb2/mmdb_xml_.cpp
create mode 100644 mmdb2/mmdb_xml_.h
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