[yade] branch master updated (4060631 -> f5e9a18)

[Anton Gladky]

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gladk pushed a change to branch master
in repository yade.

      from  4060631   Update changelog.
      adds  d42c7de   Imported Upstream version 1.07.0
       new  72426ae   Merge tag 'upstream/1.07.0'
       new  a421b10   Remove patch, applied by upstream.
       new  d151f88   Set Standards-Version: 3.9.5. No changes.
       new  a9616c6   Add upstream file.
       new  c078bb4   Inject additional parameters for weak archs. Thanks to Roland Stigge <stigge at antcom.de>. (Closes: #733152)
       new  f5e9a18   Update changelog.

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repository and will be described in separate emails.  The revisions
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Summary of changes:
 CMakeLists.txt                                     |  40 ++++--
 ChangeLog                                          | 127 ++++++++++++++++---
 README.rst                                         |   5 +-
 RELEASE                                            |   2 +-
 core/main/main.py.in                               |  10 +-
 core/main/yade-batch.in                            |   7 ++
 debian/changelog                                   |  11 ++
 debian/control                                     |   2 +-
 debian/patches/20_disable_release-mode.patch       |  40 ------
 debian/patches/series                              |   1 -
 debian/rules                                       |   5 +
 debian/upstream                                    |  11 ++
 doc/references.bib                                 |  42 +++++--
 doc/sphinx/formulation.rst                         |  14 ++-
 doc/sphinx/installation.rst                        |  88 ++++++++++----
 doc/sphinx/user.rst                                |   2 +-
 doc/yade-articles.bib                              |  15 ++-
 .../baraban/{baraban.py => BicyclePedalEngine.py}  |   2 +-
 examples/clumps/addToClump-example.py              |   4 +
 .../{addToClump-example.py => save-load-clumps.py} |  24 ++--
 examples/concrete/triax.py                         |   7 +-
 examples/jointedCohesiveFrictionalPM/gravityBis.py |  11 +-
 .../jointedCohesiveFrictionalPM/gravityLoading.py  |  14 +--
 examples/jointedCohesiveFrictionalPM/identifBis.py |  91 +++++++-------
 .../identificationSpheresOnJoint.py                | 120 +++++++++---------
 .../jointedCohesiveFrictionalPM/testingJoint.py    | 135 +++++++++++++++++++++
 examples/packs/packs.py                            |  11 +-
 examples/stl-gts/README                            |   7 ++
 examples/stl-gts/cone.geo                          |  38 ++++++
 examples/stl-gts/convert2stl.sh                    |   3 +
 examples/stl-gts/gts-stl.py                        |  42 +++++++
 examples/tetra/oneTetra.py                         |   2 +-
 examples/triax-tutorial/script-session1.py         |   1 +
 gui/qt4/GLViewerMouse.cpp                          |  42 ++++---
 gui/qt4/__init__.py                                |  11 +-
 lib/triangulation/FlowBoundingSphere.ipp           |   3 +-
 lib/triangulation/FlowBoundingSphereLinSolv.ipp    |   3 +-
 lib/triangulation/PeriodicFlow.cpp                 |   1 -
 lib/triangulation/def_types.h                      |   3 +
 pkg/common/Grid.cpp                                |  61 ----------
 pkg/common/Grid_GUI.cpp                            |  67 ++++++++++
 pkg/common/KinematicEngines.cpp                    |  33 ++++-
 pkg/common/KinematicEngines.hpp                    |  12 ++
 pkg/dem/FlowEngine.cpp                             |  40 +++---
 pkg/dem/FlowEngine.hpp                             |  13 +-
 pkg/dem/Ip2_FrictMat_FrictMat_FrictPhys.cpp        |  33 +++--
 pkg/dem/JointedCohesiveFrictionalPM.cpp            | 106 ++++++++++------
 pkg/dem/JointedCohesiveFrictionalPM.hpp            |  75 ++++++------
 pkg/dem/Shop.hpp                                   |   4 +-
 pkg/dem/Shop_02.cpp                                |  13 ++
 pkg/dem/TesselationWrapper.hpp                     |   4 +-
 pkg/dem/VTKRecorder.cpp                            |  74 ++++++++---
 pkg/dem/VTKRecorder.hpp                            |   3 +-
 pkg/dem/ViscoelasticPM.cpp                         |  68 +++++++----
 pkg/dem/ViscoelasticPM.hpp                         |  15 ++-
 py/_extraDocs.py                                   |   6 +-
 py/_utils.cpp                                      |  61 +++++-----
 py/export.py                                       |  47 ++++++-
 py/pack/pack.py                                    |   6 +-
 py/utils.py                                        |   2 +-
 py/ymport.py                                       |  40 ++++++
 scripts/checks-and-tests/checks/DEM-PFV-check.py   |  11 +-
 scripts/checks-and-tests/checks/checkViscElEng.py  |  59 +++++++++
 scripts/checks-and-tests/checks/checkWeight.py     |   2 +-
 scripts/ppa/.dput.cf                               |   6 +
 scripts/ppa/.mini-dinstall.conf                    |  21 ++++
 scripts/ppa/buildppa.py                            | 120 ++++++++++++++++++
 scripts/ppa/ppa.config                             |  31 +++++
 68 files changed, 1499 insertions(+), 531 deletions(-)
 delete mode 100644 debian/patches/20_disable_release-mode.patch
 delete mode 100644 debian/patches/series
 create mode 100644 debian/upstream
 copy examples/baraban/{baraban.py => BicyclePedalEngine.py} (95%)
 copy examples/clumps/{addToClump-example.py => save-load-clumps.py} (80%)
 create mode 100644 examples/jointedCohesiveFrictionalPM/testingJoint.py
 create mode 100644 examples/stl-gts/README
 create mode 100644 examples/stl-gts/cone.geo
 create mode 100755 examples/stl-gts/convert2stl.sh
 create mode 100644 examples/stl-gts/gts-stl.py
 create mode 100644 pkg/common/Grid_GUI.cpp
 create mode 100644 scripts/checks-and-tests/checks/checkViscElEng.py
 create mode 100644 scripts/ppa/.dput.cf
 create mode 100644 scripts/ppa/.mini-dinstall.conf
 create mode 100755 scripts/ppa/buildppa.py
 create mode 100644 scripts/ppa/ppa.config

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