[r-cran-ncdf4] 01/03: Imported Upstream version 1.15
Balint Reczey
rbalint at moszumanska.debian.org
Tue Dec 15 13:25:51 UTC 2015
This is an automated email from the git hooks/post-receive script.
rbalint pushed a commit to branch master
in repository r-cran-ncdf4.
commit 1a3301f05b4e26f729a01abeb2f9c11a8645b032
Author: Balint Reczey <balint at balintreczey.hu>
Date: Tue Dec 15 14:05:37 2015 +0100
Imported Upstream version 1.15
---
DESCRIPTION | 16 +-
MD5 | 17 +-
R/ncdf4.R | 2 +-
R/ncdf4_priv_var.R | 5 +-
configure | 1044 +++++++++++-
src/Makevars.win | 2 +-
tools/autom4te.cache/output.0 | 3073 ----------------------------------
tools/autom4te.cache/output.1 | 3073 ----------------------------------
tools/autom4te.cache/requests | 100 --
tools/autom4te.cache/traces.0 | 169 --
tools/autom4te.cache/traces.1 | 208 ---
tools/{configure.in => configure.ac} | 34 +-
12 files changed, 1078 insertions(+), 6665 deletions(-)
diff --git a/DESCRIPTION b/DESCRIPTION
index 4ba6953..31d13fe 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,11 +1,11 @@
Package: ncdf4
-Version: 1.13
-Date: 2014-09-15
-Title: Interface to Unidata netCDF (version 4 or earlier) format data
- files
+Version: 1.15
+Date: 2015-12-03
+Title: Interface to Unidata netCDF (Version 4 or Earlier) Format Data
+ Files
Author: David Pierce <dpierce at ucsd.edu>
Maintainer: David Pierce <dpierce at ucsd.edu>
-Description: This package provides a high-level R interface to
+Description: Provides a high-level R interface to
data files written using Unidata's
netCDF library (version 4 or earlier), which are binary data files that are portable
across platforms and include metadata information in addition to the data sets.
@@ -22,8 +22,8 @@ Description: This package provides a high-level R interface to
However, the ncdf package does not provide an interface for netcdf version 4 files.
SystemRequirements: netcdf library version 4.1 or later
License: GPL (>= 3)
-URL: http://dwpierce.com/software
-Packaged: 2014-09-15 19:35:18 UTC; pierce
+URL: http://cirrus.ucsd.edu/~pierce/ncdf
NeedsCompilation: yes
+Packaged: 2015-12-03 19:37:16 UTC; pierce
Repository: CRAN
-Date/Publication: 2014-09-16 06:48:13
+Date/Publication: 2015-12-04 08:40:41
diff --git a/MD5 b/MD5
index 78e7465..5c9bd8f 100644
--- a/MD5
+++ b/MD5
@@ -1,14 +1,14 @@
6349e4bb96c92e1f11ed21ccc87921a7 *ChangeLog
-4eae368516c8c753266eee9f0a95caae *DESCRIPTION
+a9e73daf294913003e35b4e8f7490a08 *DESCRIPTION
36c1fbaaed8bc2fb94337130abd73011 *NAMESPACE
-d2d329a81f4e6abe283c03142573ced5 *R/ncdf4.R
+81cffdc656e2bf625c49d24bccb73967 *R/ncdf4.R
777eba9944e67d13aac05649cd647add *R/ncdf4_priv.R
52a6d12a881e70557619d3af3fd87344 *R/ncdf4_priv_att.R
79b5675030428c59e2bcfa615e0b8ec3 *R/ncdf4_priv_dim.R
4fa0a42620c29121a9cb1bd91e27eb83 *R/ncdf4_priv_group.R
-50f97d1eeedbe75d34800e70b050c989 *R/ncdf4_priv_var.R
+2463eebf7d75bd6fb0555e991be76ff3 *R/ncdf4_priv_var.R
375cb891a49b0b7c57a1aff35daf1193 *cleanup
-31c5db8ef15c60aaf53c2eee358f3dd0 *configure
+d166b74624cd62256b6491b849d5e3ee *configure
a06df3f633622526b02785e5442b4835 *inst/HDF5_COPYING
b6edd0b113e654540165a2b53d1e81d8 *man/ancvar_put.Rd
b256db50eaf9b1638ae3badef997ac4a *man/nc_close.Rd
@@ -30,17 +30,12 @@ e74dccdae3c5e14fa03d773a9342f2c5 *man/ncvar_get.Rd
209c48d9ce067af778c2761149efd74b *man/ncvar_rename.Rd
b369a7b9533b2746c1d9ed42c6647f51 *man/print.ncdf4.Rd
78d681e25a4cad63030a0de445d13fa5 *src/Makevars.in
-6b8b956530083f959229797ee06c37f2 *src/Makevars.win
+3f869799c5a06e5ccdeca7bb6ea5d29e *src/Makevars.win
362ced868dbe65ef95c3395a51668e54 *src/ncdf.c
70119be77937051c3b7c1e002801ee3d *src/ncdf2.c
775c352f00162845ceafee479395eb7a *src/ncdf3.c
f94a28cbb63203fec788bb23d1a7db28 *src/src_ncdf4.c
b4d36900efe0d6045f65d132445a9b6d *tools/aclocal.m4
-9c88c222cfa9e76a541f8ffed3f853e7 *tools/autom4te.cache/output.0
-9c88c222cfa9e76a541f8ffed3f853e7 *tools/autom4te.cache/output.1
-90fcd24f63e2e581f0712fb9970ab584 *tools/autom4te.cache/requests
-e572283bcf1754a828e16fa87e84fdd2 *tools/autom4te.cache/traces.0
-603bf9e79813d658000189e5924e1576 *tools/autom4te.cache/traces.1
-18205d0e595ed14d77a12914fa0c3175 *tools/configure.in
+54f32ede0c409c04707dd0ebb9175900 *tools/configure.ac
c385dcbf01f753e75aee4c5db9a66337 *tools/netcdf.m4
f695d66e71d8028902b4801b5ecb5023 *tools/regenerate
diff --git a/R/ncdf4.R b/R/ncdf4.R
index 41585c1..47e7945 100644
--- a/R/ncdf4.R
+++ b/R/ncdf4.R
@@ -129,7 +129,7 @@
#======================================================================================================
nc_version <- function() {
- return("ncdf4_1.13_20140914")
+ return("ncdf4_1.15_20151203")
}
diff --git a/R/ncdf4_priv_var.R b/R/ncdf4_priv_var.R
index dc6da40..edf5f23 100644
--- a/R/ncdf4_priv_var.R
+++ b/R/ncdf4_priv_var.R
@@ -604,9 +604,12 @@ ncvar_get_inner <- function( ncid, varid, missval, addOffset=0., scaleFact=1.0,
stop("Error, second arg passed to ncvar_get_inner (varid) must be a simple C-style integer that is passed directly to the C api")
- if( verbose )
+ if( verbose ) {
print(paste("ncvar_get_inner: entering with (C-STYLE INTEGER ONLY) ncid=", ncid,
"varid=", varid ))
+ print(paste("ncvar_get_inner: following line is collapse_degen:"))
+ print(collapse_degen)
+ }
tmp_typename = c('short', 'int', 'float', 'double', 'char', 'byte' )
diff --git a/configure b/configure
index faa19a1..55a4b39 100755
--- a/configure
+++ b/configure
@@ -562,7 +562,14 @@ PACKAGE_BUGREPORT=
PACKAGE_URL=
ac_unique_file="src/Makevars.in"
-ac_subst_vars='LTLIBOBJS
+ac_subst_vars='OBJEXT
+EXEEXT
+ac_ct_CC
+CPPFLAGS
+LDFLAGS
+CFLAGS
+CC
+LTLIBOBJS
LIBOBJS
HAVE_NETCDF
NETCDF_RPATH
@@ -617,7 +624,12 @@ with_nc_config
'
ac_precious_vars='build_alias
host_alias
-target_alias'
+target_alias
+CC
+CFLAGS
+LDFLAGS
+LIBS
+CPPFLAGS'
# Initialize some variables set by options.
@@ -1228,6 +1240,18 @@ Optional Packages:
--without-PACKAGE do not use PACKAGE (same as --with-PACKAGE=no)
--with-nc-config=path to nc-config script from netcdf v4 package
+Some influential environment variables:
+ CC C compiler command
+ CFLAGS C compiler flags
+ LDFLAGS linker flags, e.g. -L<lib dir> if you have libraries in a
+ nonstandard directory <lib dir>
+ LIBS libraries to pass to the linker, e.g. -l<library>
+ CPPFLAGS (Objective) C/C++ preprocessor flags, e.g. -I<include dir> if
+ you have headers in a nonstandard directory <include dir>
+
+Use these variables to override the choices made by `configure' or to help
+it to find libraries and programs with nonstandard names/locations.
+
Report bugs to the package provider.
_ACEOF
ac_status=$?
@@ -1304,6 +1328,44 @@ fi
## ------------------------ ##
## Autoconf initialization. ##
## ------------------------ ##
+
+# ac_fn_c_try_compile LINENO
+# --------------------------
+# Try to compile conftest.$ac_ext, and return whether this succeeded.
+ac_fn_c_try_compile ()
+{
+ as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
+ rm -f conftest.$ac_objext
+ if { { ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_compile") 2>conftest.err
+ ac_status=$?
+ if test -s conftest.err; then
+ grep -v '^ *+' conftest.err >conftest.er1
+ cat conftest.er1 >&5
+ mv -f conftest.er1 conftest.err
+ fi
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; } && {
+ test -z "$ac_c_werror_flag" ||
+ test ! -s conftest.err
+ } && test -s conftest.$ac_objext; then :
+ ac_retval=0
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+ ac_retval=1
+fi
+ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
+ as_fn_set_status $ac_retval
+
+} # ac_fn_c_try_compile
cat >config.log <<_ACEOF
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
@@ -1657,7 +1719,7 @@ ac_compiler_gnu=$ac_cv_c_compiler_gnu
-echo "configure.in: starting"
+echo "configure.ac: starting"
: ${R_HOME=`R RHOME`}
if test -z "${R_HOME}"; then
@@ -3002,7 +3064,8 @@ set $NETCDF_CC
NETCDF_CC_ARG1=$1
set $CC
R_CC_ARG1=$1
-if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1; then
+TEST_EMIT_WARNING=0
+if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1 -o $TEST_EMIT_WARNING -eq 1; then
#------------------------------------------------------------------------------
# By default, we emit a warning if the compilers of R and netcdf are different.
@@ -3016,6 +3079,608 @@ if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1; then
NETCDF_IS_GCC=0
if echo "$NETCDF_CC_ARG1" | grep -q "gcc"; then
NETCDF_IS_GCC=1
+ else
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+if test -n "$ac_tool_prefix"; then
+ for ac_prog in $NETCDF_CC_ARG1
+ do
+ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_CC+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$CC"; then
+ ac_cv_prog_CC="$CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
+ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+ done
+IFS=$as_save_IFS
+
+fi
+fi
+CC=$ac_cv_prog_CC
+if test -n "$CC"; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
+$as_echo "$CC" >&6; }
+else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$CC" && break
+ done
+fi
+if test -z "$CC"; then
+ ac_ct_CC=$CC
+ for ac_prog in $NETCDF_CC_ARG1
+do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+set dummy $ac_prog; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_ac_ct_CC+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_CC"; then
+ ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_CC="$ac_prog"
+ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+ done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_CC=$ac_cv_prog_ac_ct_CC
+if test -n "$ac_ct_CC"; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5
+$as_echo "$ac_ct_CC" >&6; }
+else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$ac_ct_CC" && break
+done
+
+ if test "x$ac_ct_CC" = x; then
+ CC=""
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ CC=$ac_ct_CC
+ fi
+fi
+
+
+test -z "$CC" && { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "no acceptable C compiler found in \$PATH
+See \`config.log' for more details" "$LINENO" 5; }
+
+# Provide some information about the compiler.
+$as_echo "$as_me:${as_lineno-$LINENO}: checking for C compiler version" >&5
+set X $ac_compile
+ac_compiler=$2
+for ac_option in --version -v -V -qversion; do
+ { { ac_try="$ac_compiler $ac_option >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_compiler $ac_option >&5") 2>conftest.err
+ ac_status=$?
+ if test -s conftest.err; then
+ sed '10a\
+... rest of stderr output deleted ...
+ 10q' conftest.err >conftest.er1
+ cat conftest.er1 >&5
+ fi
+ rm -f conftest.er1 conftest.err
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }
+done
+
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+ac_clean_files_save=$ac_clean_files
+ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out"
+# Try to create an executable without -o first, disregard a.out.
+# It will help us diagnose broken compilers, and finding out an intuition
+# of exeext.
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the C compiler works" >&5
+$as_echo_n "checking whether the C compiler works... " >&6; }
+ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
+
+# The possible output files:
+ac_files="a.out conftest.exe conftest a.exe a_out.exe b.out conftest.*"
+
+ac_rmfiles=
+for ac_file in $ac_files
+do
+ case $ac_file in
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
+ * ) ac_rmfiles="$ac_rmfiles $ac_file";;
+ esac
+done
+rm -f $ac_rmfiles
+
+if { { ac_try="$ac_link_default"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_link_default") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }; then :
+ # Autoconf-2.13 could set the ac_cv_exeext variable to `no'.
+# So ignore a value of `no', otherwise this would lead to `EXEEXT = no'
+# in a Makefile. We should not override ac_cv_exeext if it was cached,
+# so that the user can short-circuit this test for compilers unknown to
+# Autoconf.
+for ac_file in $ac_files ''
+do
+ test -f "$ac_file" || continue
+ case $ac_file in
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj )
+ ;;
+ [ab].out )
+ # We found the default executable, but exeext='' is most
+ # certainly right.
+ break;;
+ *.* )
+ if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no;
+ then :; else
+ ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
+ fi
+ # We set ac_cv_exeext here because the later test for it is not
+ # safe: cross compilers may not add the suffix if given an `-o'
+ # argument, so we may need to know it at that point already.
+ # Even if this section looks crufty: it has the advantage of
+ # actually working.
+ break;;
+ * )
+ break;;
+ esac
+done
+test "$ac_cv_exeext" = no && ac_cv_exeext=
+
+else
+ ac_file=''
+fi
+if test -z "$ac_file"; then :
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+$as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error 77 "C compiler cannot create executables
+See \`config.log' for more details" "$LINENO" 5; }
+else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
+$as_echo "yes" >&6; }
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for C compiler default output file name" >&5
+$as_echo_n "checking for C compiler default output file name... " >&6; }
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_file" >&5
+$as_echo "$ac_file" >&6; }
+ac_exeext=$ac_cv_exeext
+
+rm -f -r a.out a.out.dSYM a.exe conftest$ac_cv_exeext b.out
+ac_clean_files=$ac_clean_files_save
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for suffix of executables" >&5
+$as_echo_n "checking for suffix of executables... " >&6; }
+if { { ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }; then :
+ # If both `conftest.exe' and `conftest' are `present' (well, observable)
+# catch `conftest.exe'. For instance with Cygwin, `ls conftest' will
+# work properly (i.e., refer to `conftest.exe'), while it won't with
+# `rm'.
+for ac_file in conftest.exe conftest conftest.*; do
+ test -f "$ac_file" || continue
+ case $ac_file in
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
+ *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
+ break;;
+ * ) break;;
+ esac
+done
+else
+ { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "cannot compute suffix of executables: cannot compile and link
+See \`config.log' for more details" "$LINENO" 5; }
+fi
+rm -f conftest conftest$ac_cv_exeext
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_exeext" >&5
+$as_echo "$ac_cv_exeext" >&6; }
+
+rm -f conftest.$ac_ext
+EXEEXT=$ac_cv_exeext
+ac_exeext=$EXEEXT
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+#include <stdio.h>
+int
+main ()
+{
+FILE *f = fopen ("conftest.out", "w");
+ return ferror (f) || fclose (f) != 0;
+
+ ;
+ return 0;
+}
+_ACEOF
+ac_clean_files="$ac_clean_files conftest.out"
+# Check that the compiler produces executables we can run. If not, either
+# the compiler is broken, or we cross compile.
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether we are cross compiling" >&5
+$as_echo_n "checking whether we are cross compiling... " >&6; }
+if test "$cross_compiling" != yes; then
+ { { ac_try="$ac_link"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_link") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }
+ if { ac_try='./conftest$ac_cv_exeext'
+ { { case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_try") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }; }; then
+ cross_compiling=no
+ else
+ if test "$cross_compiling" = maybe; then
+ cross_compiling=yes
+ else
+ { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "cannot run C compiled programs.
+If you meant to cross compile, use \`--host'.
+See \`config.log' for more details" "$LINENO" 5; }
+ fi
+ fi
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $cross_compiling" >&5
+$as_echo "$cross_compiling" >&6; }
+
+rm -f conftest.$ac_ext conftest$ac_cv_exeext conftest.out
+ac_clean_files=$ac_clean_files_save
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for suffix of object files" >&5
+$as_echo_n "checking for suffix of object files... " >&6; }
+if ${ac_cv_objext+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+rm -f conftest.o conftest.obj
+if { { ac_try="$ac_compile"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_compile") 2>&5
+ ac_status=$?
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }; then :
+ for ac_file in conftest.o conftest.obj conftest.*; do
+ test -f "$ac_file" || continue;
+ case $ac_file in
+ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM ) ;;
+ *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
+ break;;
+ esac
+done
+else
+ $as_echo "$as_me: failed program was:" >&5
+sed 's/^/| /' conftest.$ac_ext >&5
+
+{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "cannot compute suffix of object files: cannot compile
+See \`config.log' for more details" "$LINENO" 5; }
+fi
+rm -f conftest.$ac_cv_objext conftest.$ac_ext
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_objext" >&5
+$as_echo "$ac_cv_objext" >&6; }
+OBJEXT=$ac_cv_objext
+ac_objext=$OBJEXT
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether we are using the GNU C compiler" >&5
+$as_echo_n "checking whether we are using the GNU C compiler... " >&6; }
+if ${ac_cv_c_compiler_gnu+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+int
+main ()
+{
+#ifndef __GNUC__
+ choke me
+#endif
+
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+ ac_compiler_gnu=yes
+else
+ ac_compiler_gnu=no
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ac_cv_c_compiler_gnu=$ac_compiler_gnu
+
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_c_compiler_gnu" >&5
+$as_echo "$ac_cv_c_compiler_gnu" >&6; }
+if test $ac_compiler_gnu = yes; then
+ GCC=yes
+else
+ GCC=
+fi
+ac_test_CFLAGS=${CFLAGS+set}
+ac_save_CFLAGS=$CFLAGS
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $CC accepts -g" >&5
+$as_echo_n "checking whether $CC accepts -g... " >&6; }
+if ${ac_cv_prog_cc_g+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_save_c_werror_flag=$ac_c_werror_flag
+ ac_c_werror_flag=yes
+ ac_cv_prog_cc_g=no
+ CFLAGS="-g"
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+ ac_cv_prog_cc_g=yes
+else
+ CFLAGS=""
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+
+else
+ ac_c_werror_flag=$ac_save_c_werror_flag
+ CFLAGS="-g"
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+ ac_cv_prog_cc_g=yes
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ ac_c_werror_flag=$ac_save_c_werror_flag
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_g" >&5
+$as_echo "$ac_cv_prog_cc_g" >&6; }
+if test "$ac_test_CFLAGS" = set; then
+ CFLAGS=$ac_save_CFLAGS
+elif test $ac_cv_prog_cc_g = yes; then
+ if test "$GCC" = yes; then
+ CFLAGS="-g -O2"
+ else
+ CFLAGS="-g"
+ fi
+else
+ if test "$GCC" = yes; then
+ CFLAGS="-O2"
+ else
+ CFLAGS=
+ fi
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $CC option to accept ISO C89" >&5
+$as_echo_n "checking for $CC option to accept ISO C89... " >&6; }
+if ${ac_cv_prog_cc_c89+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_cv_prog_cc_c89=no
+ac_save_CC=$CC
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+#include <stdarg.h>
+#include <stdio.h>
+#include <sys/types.h>
+#include <sys/stat.h>
+/* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */
+struct buf { int x; };
+FILE * (*rcsopen) (struct buf *, struct stat *, int);
+static char *e (p, i)
+ char **p;
+ int i;
+{
+ return p[i];
+}
+static char *f (char * (*g) (char **, int), char **p, ...)
+{
+ char *s;
+ va_list v;
+ va_start (v,p);
+ s = g (p, va_arg (v,int));
+ va_end (v);
+ return s;
+}
+
+/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has
+ function prototypes and stuff, but not '\xHH' hex character constants.
+ These don't provoke an error unfortunately, instead are silently treated
+ as 'x'. The following induces an error, until -std is added to get
+ proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an
+ array size at least. It's necessary to write '\x00'==0 to get something
+ that's true only with -std. */
+int osf4_cc_array ['\x00' == 0 ? 1 : -1];
+
+/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters
+ inside strings and character constants. */
+#define FOO(x) 'x'
+int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1];
+
+int test (int i, double x);
+struct s1 {int (*f) (int a);};
+struct s2 {int (*f) (double a);};
+int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int);
+int argc;
+char **argv;
+int
+main ()
+{
+return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1];
+ ;
+ return 0;
+}
+_ACEOF
+for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \
+ -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
+do
+ CC="$ac_save_CC $ac_arg"
+ if ac_fn_c_try_compile "$LINENO"; then :
+ ac_cv_prog_cc_c89=$ac_arg
+fi
+rm -f core conftest.err conftest.$ac_objext
+ test "x$ac_cv_prog_cc_c89" != "xno" && break
+done
+rm -f conftest.$ac_ext
+CC=$ac_save_CC
+
+fi
+# AC_CACHE_VAL
+case "x$ac_cv_prog_cc_c89" in
+ x)
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: none needed" >&5
+$as_echo "none needed" >&6; } ;;
+ xno)
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5
+$as_echo "unsupported" >&6; } ;;
+ *)
+ CC="$CC $ac_cv_prog_cc_c89"
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c89" >&5
+$as_echo "$ac_cv_prog_cc_c89" >&6; } ;;
+esac
+if test "x$ac_cv_prog_cc_c89" != xno; then :
+
+fi
+
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+ if test "z$GCC" = zyes; then
+ NETCDF_IS_GCC=1
+ fi
fi
NETCDF_IS_CLANG=0
if echo "$NETCDF_CC_ARG1" | grep -q "clang"; then
@@ -3025,6 +3690,358 @@ if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1; then
R_IS_GCC=0
if echo "$R_CC_ARG1" | grep -q "gcc"; then
R_IS_GCC=1
+ else
+ ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+if test -n "$ac_tool_prefix"; then
+ for ac_prog in $R_CC_ARG1
+ do
+ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
+set dummy $ac_tool_prefix$ac_prog; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_CC+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$CC"; then
+ ac_cv_prog_CC="$CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
+ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+ done
+IFS=$as_save_IFS
+
+fi
+fi
+CC=$ac_cv_prog_CC
+if test -n "$CC"; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
+$as_echo "$CC" >&6; }
+else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$CC" && break
+ done
+fi
+if test -z "$CC"; then
+ ac_ct_CC=$CC
+ for ac_prog in $R_CC_ARG1
+do
+ # Extract the first word of "$ac_prog", so it can be a program name with args.
+set dummy $ac_prog; ac_word=$2
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
+$as_echo_n "checking for $ac_word... " >&6; }
+if ${ac_cv_prog_ac_ct_CC+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ if test -n "$ac_ct_CC"; then
+ ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
+else
+as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
+for as_dir in $PATH
+do
+ IFS=$as_save_IFS
+ test -z "$as_dir" && as_dir=.
+ for ac_exec_ext in '' $ac_executable_extensions; do
+ if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
+ ac_cv_prog_ac_ct_CC="$ac_prog"
+ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
+ break 2
+ fi
+done
+ done
+IFS=$as_save_IFS
+
+fi
+fi
+ac_ct_CC=$ac_cv_prog_ac_ct_CC
+if test -n "$ac_ct_CC"; then
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5
+$as_echo "$ac_ct_CC" >&6; }
+else
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
+$as_echo "no" >&6; }
+fi
+
+
+ test -n "$ac_ct_CC" && break
+done
+
+ if test "x$ac_ct_CC" = x; then
+ CC=""
+ else
+ case $cross_compiling:$ac_tool_warned in
+yes:)
+{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5
+$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
+ac_tool_warned=yes ;;
+esac
+ CC=$ac_ct_CC
+ fi
+fi
+
+
+test -z "$CC" && { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
+$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
+as_fn_error $? "no acceptable C compiler found in \$PATH
+See \`config.log' for more details" "$LINENO" 5; }
+
+# Provide some information about the compiler.
+$as_echo "$as_me:${as_lineno-$LINENO}: checking for C compiler version" >&5
+set X $ac_compile
+ac_compiler=$2
+for ac_option in --version -v -V -qversion; do
+ { { ac_try="$ac_compiler $ac_option >&5"
+case "(($ac_try" in
+ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
+ *) ac_try_echo=$ac_try;;
+esac
+eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
+$as_echo "$ac_try_echo"; } >&5
+ (eval "$ac_compiler $ac_option >&5") 2>conftest.err
+ ac_status=$?
+ if test -s conftest.err; then
+ sed '10a\
+... rest of stderr output deleted ...
+ 10q' conftest.err >conftest.er1
+ cat conftest.er1 >&5
+ fi
+ rm -f conftest.er1 conftest.err
+ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
+ test $ac_status = 0; }
+done
+
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether we are using the GNU C compiler" >&5
+$as_echo_n "checking whether we are using the GNU C compiler... " >&6; }
+if ${ac_cv_c_compiler_gnu+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+int
+main ()
+{
+#ifndef __GNUC__
+ choke me
+#endif
+
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+ ac_compiler_gnu=yes
+else
+ ac_compiler_gnu=no
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ac_cv_c_compiler_gnu=$ac_compiler_gnu
+
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_c_compiler_gnu" >&5
+$as_echo "$ac_cv_c_compiler_gnu" >&6; }
+if test $ac_compiler_gnu = yes; then
+ GCC=yes
+else
+ GCC=
+fi
+ac_test_CFLAGS=${CFLAGS+set}
+ac_save_CFLAGS=$CFLAGS
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $CC accepts -g" >&5
+$as_echo_n "checking whether $CC accepts -g... " >&6; }
+if ${ac_cv_prog_cc_g+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_save_c_werror_flag=$ac_c_werror_flag
+ ac_c_werror_flag=yes
+ ac_cv_prog_cc_g=no
+ CFLAGS="-g"
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+ ac_cv_prog_cc_g=yes
+else
+ CFLAGS=""
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+
+else
+ ac_c_werror_flag=$ac_save_c_werror_flag
+ CFLAGS="-g"
+ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+
+int
+main ()
+{
+
+ ;
+ return 0;
+}
+_ACEOF
+if ac_fn_c_try_compile "$LINENO"; then :
+ ac_cv_prog_cc_g=yes
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+fi
+rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
+ ac_c_werror_flag=$ac_save_c_werror_flag
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_g" >&5
+$as_echo "$ac_cv_prog_cc_g" >&6; }
+if test "$ac_test_CFLAGS" = set; then
+ CFLAGS=$ac_save_CFLAGS
+elif test $ac_cv_prog_cc_g = yes; then
+ if test "$GCC" = yes; then
+ CFLAGS="-g -O2"
+ else
+ CFLAGS="-g"
+ fi
+else
+ if test "$GCC" = yes; then
+ CFLAGS="-O2"
+ else
+ CFLAGS=
+ fi
+fi
+{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $CC option to accept ISO C89" >&5
+$as_echo_n "checking for $CC option to accept ISO C89... " >&6; }
+if ${ac_cv_prog_cc_c89+:} false; then :
+ $as_echo_n "(cached) " >&6
+else
+ ac_cv_prog_cc_c89=no
+ac_save_CC=$CC
+cat confdefs.h - <<_ACEOF >conftest.$ac_ext
+/* end confdefs.h. */
+#include <stdarg.h>
+#include <stdio.h>
+#include <sys/types.h>
+#include <sys/stat.h>
+/* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */
+struct buf { int x; };
+FILE * (*rcsopen) (struct buf *, struct stat *, int);
+static char *e (p, i)
+ char **p;
+ int i;
+{
+ return p[i];
+}
+static char *f (char * (*g) (char **, int), char **p, ...)
+{
+ char *s;
+ va_list v;
+ va_start (v,p);
+ s = g (p, va_arg (v,int));
+ va_end (v);
+ return s;
+}
+
+/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has
+ function prototypes and stuff, but not '\xHH' hex character constants.
+ These don't provoke an error unfortunately, instead are silently treated
+ as 'x'. The following induces an error, until -std is added to get
+ proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an
+ array size at least. It's necessary to write '\x00'==0 to get something
+ that's true only with -std. */
+int osf4_cc_array ['\x00' == 0 ? 1 : -1];
+
+/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters
+ inside strings and character constants. */
+#define FOO(x) 'x'
+int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1];
+
+int test (int i, double x);
+struct s1 {int (*f) (int a);};
+struct s2 {int (*f) (double a);};
+int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int);
+int argc;
+char **argv;
+int
+main ()
+{
+return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1];
+ ;
+ return 0;
+}
+_ACEOF
+for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \
+ -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
+do
+ CC="$ac_save_CC $ac_arg"
+ if ac_fn_c_try_compile "$LINENO"; then :
+ ac_cv_prog_cc_c89=$ac_arg
+fi
+rm -f core conftest.err conftest.$ac_objext
+ test "x$ac_cv_prog_cc_c89" != "xno" && break
+done
+rm -f conftest.$ac_ext
+CC=$ac_save_CC
+
+fi
+# AC_CACHE_VAL
+case "x$ac_cv_prog_cc_c89" in
+ x)
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: none needed" >&5
+$as_echo "none needed" >&6; } ;;
+ xno)
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5
+$as_echo "unsupported" >&6; } ;;
+ *)
+ CC="$CC $ac_cv_prog_cc_c89"
+ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c89" >&5
+$as_echo "$ac_cv_prog_cc_c89" >&6; } ;;
+esac
+if test "x$ac_cv_prog_cc_c89" != xno; then :
+
+fi
+
+ac_ext=c
+ac_cpp='$CPP $CPPFLAGS'
+ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
+ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
+ac_compiler_gnu=$ac_cv_c_compiler_gnu
+
+ if test "z$GCC" = zyes; then
+ R_IS_GCC=1
+ fi
fi
R_IS_CLANG=0
if echo "$R_CC_ARG1" | grep -q "clang"; then
@@ -3053,13 +4070,16 @@ if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1; then
emit_warning=0
fi
- echo "netcdf cc arg1: $NETCDF_CC_ARG1 R cc arg1: $R_CC_ARG1 R_IS_GCC: $R_IS_GCC R_IS_CLANG: $R_IS_CLANG NETCDF_IS_GCC: $NETCDF_IS_GCC NETCDF_IS_CLANG: $NETCDF_IS_CLANG"
+ echo "netcdf cc arg1: $NETCDF_CC_ARG1 R cc arg1: $R_CC_ARG1 R_IS_GCC: $R_IS_GCC R_IS_CLANG: $R_IS_CLANG NETCDF_IS_GCC: $NETCDF_IS_GCC NETCDF_IS_CLANG: $NETCDF_IS_CLANG emit_warning: $emit_warning"
- if test $emit_warning -eq 1; then
- echo ">>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>"
- echo "WARNING: I *think* that different compilers are being used for R and the netcdf library!"
- echo "If that is the case, then you may not be able to install the ncdf4 package successfully. If installation"
- echo "fails, you must create a new version of the netcdf library that was compiled with the same"
+ if test $emit_warning -eq 1 -o $TEST_EMIT_WARNING -eq 1; then
+ echo " "
+ echo ">>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>"
+ echo "Dear ncdf4 user: The software configuration tool thinks that perhaps different compilers are being"
+ echo "used for R and the netcdf library. However, we all know that software configuration tools are"
+ echo "not that smart. If ncdf4 compiles fine for you, then please ignore this message. However, if"
+ echo "installation fails, it might be that you are using different compilers for R and the netcdf library."
+ echo "If so, then you must create a new version of the netcdf library that was compiled with the same"
echo "compiler that was used to install R (see information above). Then, try installing the ncdf4"
echo "package again using that new netcdf library. If necessary, you can specify the location of"
echo "the new nc-config (the one that uses the same compiler used by R) like this:"
@@ -3067,7 +4087,9 @@ if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1; then
echo "R CMD INSTALL --configure-args=\"--with-nc-config=/home/joe/bin/nc-config\""
echo " "
echo "(obviously, put in the correct path to YOUR nc-config, don't just use my example location!)"
- echo "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<"
+ echo "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<"
+ echo " "
fi
+
fi
diff --git a/src/Makevars.win b/src/Makevars.win
index b47c1c9..15d0204 100644
--- a/src/Makevars.win
+++ b/src/Makevars.win
@@ -1 +1 @@
-PKG_LIBS=-lnetcdfdll
+PKG_LIBS = -lnetcdf4 -L$(LIB_HDF5)/lib${R_ARCH} -lhdf5_hl -lhdf5 -lz
diff --git a/tools/autom4te.cache/output.0 b/tools/autom4te.cache/output.0
deleted file mode 100644
index f42c047..0000000
--- a/tools/autom4te.cache/output.0
+++ /dev/null
@@ -1,3073 +0,0 @@
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-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-
-
-echo "configure.in: starting"
-
-: ${R_HOME=`R RHOME`}
-if test -z "${R_HOME}"; then
- echo "Could not determine R_HOME"
- exit 1
-fi
-
-#---------------------------------------------------------------------------
-# The way R's package installation mechanism works, the C compiler and flags
-# are set by R, and not changable at the package level. So this is really
-# just for information purposes. Changing these values will NOT result in
-# a different compiler being used!!
-#---------------------------------------------------------------------------
-CC=`${R_HOME}/bin/R CMD config CC`
-CFLAGS=`${R_HOME}/bin/R CMD config CFLAGS`
-
-# for ncdf4, I've chosen to REQUIRE the netcdf v4 interface
-
-
-@%:@ Check whether --with-nc_config was given.
-if test "${with_nc_config+set}" = set; then :
- withval=$with_nc_config; NC_CONFIG=$withval
-fi
-
-err=0
-if test x$NC_CONFIG = x; then
- NC_CONFIG_SHORT=nc-config
- NC_CONFIG_FULLQUAL=nc-config
- NC_CONFIG_PATH=$PATH
-else
- echo "user specified nc-config is $NC_CONFIG"
- NC_CONFIG_SHORT=`basename $NC_CONFIG`
- NC_CONFIG_FULLQUAL=$NC_CONFIG
- NC_CONFIG_PATH=`dirname $NC_CONFIG`
-fi
-# Extract the first word of "$NC_CONFIG_SHORT", so it can be a program name with args.
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-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
-$as_echo_n "checking for $ac_word... " >&6; }
-if ${ac_cv_prog_HAS_NC_CONFIG+:} false; then :
- $as_echo_n "(cached) " >&6
-else
- if test -n "$HAS_NC_CONFIG"; then
- ac_cv_prog_HAS_NC_CONFIG="$HAS_NC_CONFIG" # Let the user override the test.
-else
-as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
-for as_dir in $NC_CONFIG_PATH
-do
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
- for ac_exec_ext in '' $ac_executable_extensions; do
- if { test -f "$as_dir/$ac_word$ac_exec_ext" && $as_test_x "$as_dir/$ac_word$ac_exec_ext"; }; then
- ac_cv_prog_HAS_NC_CONFIG="yes"
- $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
- break 2
- fi
-done
- done
-IFS=$as_save_IFS
-
- test -z "$ac_cv_prog_HAS_NC_CONFIG" && ac_cv_prog_HAS_NC_CONFIG="no"
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-fi
-HAS_NC_CONFIG=$ac_cv_prog_HAS_NC_CONFIG
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-$as_echo "$HAS_NC_CONFIG" >&6; }
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- { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
-$as_echo "no" >&6; }
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-
-
-if test x$HAS_NC_CONFIG = xno; then
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- echo "Error, nc-config not found or not executable. This is a script that comes with the"
- echo "netcdf library, version 4.1-beta2 or later, and must be present for configuration"
- echo "to succeed."
- echo " "
- echo "If you installed the netcdf library (and nc-config) in a standard location, nc-config"
- echo "should be found automatically. Otherwise, you can specify the full path and name of"
- echo "the nc-config script by passing the --with-nc-config=/full/path/nc-config argument"
- echo "flag to the configure script. For example:"
- echo " "
- echo "./configure --with-nc-config=/sw/dist/netcdf4/bin/nc-config"
- echo " "
- echo "Special note for R users:"
- echo "-------------------------"
- echo "To pass the configure flag to R, use something like this:"
- echo " "
- echo "R CMD INSTALL --configure-args=\"--with-nc-config=/home/joe/bin/nc-config\" ncdf4"
- echo " "
- echo "where you should replace /home/joe/bin etc. with the location where you have"
- echo "installed the nc-config script that came with the netcdf 4 distribution."
- echo "-----------------------------------------------------------------------------------"
- exit -1
-fi
-echo "Using nc-config: $NC_CONFIG_FULLQUAL"
-echo "Output of nc-config --all:"
-$NC_CONFIG_FULLQUAL --all
-echo "---"
-NETCDF_CC=`$NC_CONFIG_FULLQUAL --cc`
-NETCDF_LDFLAGS=`$NC_CONFIG_FULLQUAL --libs`
-NETCDF_CPPFLAGS=`$NC_CONFIG_FULLQUAL --cflags`
-NETCDF_VERSION=`$NC_CONFIG_FULLQUAL --version`
-NETCDF_RPATH=' '
-echo "netcdf.m4: about to set rpath, here is source string: >$NETCDF_LDFLAGS<"
-for word in $NETCDF_LDFLAGS; do
- v2=`expr "$word" : '-L/'`
- if test $v2 -eq 3; then
- slibdir=${word:2}
- NETCDF_RPATH="$NETCDF_RPATH -Wl,-rpath,$slibdir"
- fi
-done
-echo "netcdf.m4: final rpath: $NETCDF_RPATH"
-NETCDF_V4=`$NC_CONFIG_FULLQUAL --has-nc4`
-
-$as_echo "@%:@define HAVE_NETCDF 1" >>confdefs.h
-
-if test x$NETCDF_V4 = xyes; then
-
-$as_echo "@%:@define HAVE_NETCDF4 1" >>confdefs.h
-
-fi
-echo "Netcdf library version: $NETCDF_VERSION"
-echo "Netcdf library has version 4 interface present: $NETCDF_V4"
-echo "Netcdf library was compiled with C compiler: $NETCDF_CC"
-
-
-
-
-
-
-
-if test $NETCDF_V4 = "no"; then
- echo "-------------------------------------------------------------------"
- echo "ncdf4 REQUIRES the netcdf library be version 4 or above,"
- echo "AND installed with HDF-5 support (i.e., the netcdf library must be"
- echo "compiled with the --enable-netcdf-4 flag). If you don't want to install"
- echo "the full version of netcdf-4 with HDF-5 support, then please install"
- echo "the old, deprecated ncdf package instead."
- echo "-------------------------------------------------------------------"
- exit -1
-fi
-
-HAVE_NETCDF=TRUE
-
-NETCDF_LDFLAGS="$NETCDF_RPATH $NETCDF_LDFLAGS $LDFLAGS"
-
-
-
-
-
-
-ac_config_files="$ac_config_files src/Makevars"
-
-cat >confcache <<\_ACEOF
-# This file is a shell script that caches the results of configure
-# tests run on this system so they can be shared between configure
-# scripts and configure runs, see configure's option --config-cache.
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-# want to keep, you may remove or edit it.
-#
-# config.status only pays attention to the cache file if you give it
-# the --recheck option to rerun configure.
-#
-# `ac_cv_env_foo' variables (set or unset) will be overridden when
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-# following values.
-
-_ACEOF
-
-# The following way of writing the cache mishandles newlines in values,
-# but we know of no workaround that is simple, portable, and efficient.
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-# Ultrix sh set writes to stderr and can't be redirected directly,
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-(
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- sort
-) |
- sed '
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- :end' >>confcache
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-$as_echo "$as_me: updating cache $cache_file" >&6;}
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- *)
- mv -f confcache "$cache_file" ;;
- esac
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-test "x$prefix" = xNONE && prefix=$ac_default_prefix
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-
-# Transform confdefs.h into DEFS.
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-:mline
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- N
- s,\\\n,,
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-t clear
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-t quote
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-s/\[/\\&/g
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-s/\$/$$/g
-H
-:any
-${
- g
- s/^\n//
- s/\n/ /g
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-'
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-
-
-ac_libobjs=
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- ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
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-done
-LIB@&t at OBJS=$ac_libobjs
-
-LTLIBOBJS=$ac_ltlibobjs
-
-
-
-: "${CONFIG_STATUS=./config.status}"
-ac_write_fail=0
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-{ $as_echo "$as_me:${as_lineno-$LINENO}: creating $CONFIG_STATUS" >&5
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-#! $SHELL
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-ac_cs_recheck=false
-ac_cs_silent=false
-
-SHELL=\${CONFIG_SHELL-$SHELL}
-export SHELL
-_ASEOF
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-## -------------------- ##
-## M4sh Initialization. ##
-## -------------------- ##
-
-# Be more Bourne compatible
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- *posix*) :
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- *) :
- ;;
-esac
-fi
-
-
-as_nl='
-'
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- else
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- arg=$1;
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- PATH_SEPARATOR=';'
- }
-fi
-
-
-# IFS
-# We need space, tab and new line, in precisely that order. Quoting is
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-PS1='$ '
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-# CDPATH.
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-
-
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-{
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-{
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- exit $1
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-{
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- {
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-as_me=`$as_basename -- "$0" ||
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- X"$0" : 'X\(/\)' \| . 2>/dev/null ||
-$as_echo X/"$0" |
- sed '/^.*\/\([^/][^/]*\)\/*$/{
- s//\1/
- q
- }
- /^X\/\(\/\/\)$/{
- s//\1/
- q
- }
- /^X\/\(\/\).*/{
- s//\1/
- q
- }
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-
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-as_cr_Letters=$as_cr_letters$as_cr_LETTERS
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-ECHO_C= ECHO_N= ECHO_T=
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--n*)
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- esac;;
-*)
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- else
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- fi
-else
- as_ln_s='cp -p'
-fi
-rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
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-
-
-@%:@ as_fn_mkdir_p
-@%:@ -------------
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-as_fn_mkdir_p ()
-{
-
- case $as_dir in #(
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diff --git a/tools/autom4te.cache/output.1 b/tools/autom4te.cache/output.1
deleted file mode 100644
index f42c047..0000000
--- a/tools/autom4te.cache/output.1
+++ /dev/null
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-$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
- { $as_echo "$as_me:${as_lineno-$LINENO}: error: changes in the environment can compromise the build" >&5
-$as_echo "$as_me: error: changes in the environment can compromise the build" >&2;}
- as_fn_error $? "run \`make distclean' and/or \`rm $cache_file' and start over" "$LINENO" 5
-fi
-## -------------------- ##
-## Main body of script. ##
-## -------------------- ##
-
-ac_ext=c
-ac_cpp='$CPP $CPPFLAGS'
-ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
-ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
-ac_compiler_gnu=$ac_cv_c_compiler_gnu
-
-
-
-echo "configure.in: starting"
-
-: ${R_HOME=`R RHOME`}
-if test -z "${R_HOME}"; then
- echo "Could not determine R_HOME"
- exit 1
-fi
-
-#---------------------------------------------------------------------------
-# The way R's package installation mechanism works, the C compiler and flags
-# are set by R, and not changable at the package level. So this is really
-# just for information purposes. Changing these values will NOT result in
-# a different compiler being used!!
-#---------------------------------------------------------------------------
-CC=`${R_HOME}/bin/R CMD config CC`
-CFLAGS=`${R_HOME}/bin/R CMD config CFLAGS`
-
-# for ncdf4, I've chosen to REQUIRE the netcdf v4 interface
-
-
-@%:@ Check whether --with-nc_config was given.
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-
-err=0
-if test x$NC_CONFIG = x; then
- NC_CONFIG_SHORT=nc-config
- NC_CONFIG_FULLQUAL=nc-config
- NC_CONFIG_PATH=$PATH
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- echo "user specified nc-config is $NC_CONFIG"
- NC_CONFIG_SHORT=`basename $NC_CONFIG`
- NC_CONFIG_FULLQUAL=$NC_CONFIG
- NC_CONFIG_PATH=`dirname $NC_CONFIG`
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-{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
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- $as_echo_n "(cached) " >&6
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-do
- IFS=$as_save_IFS
- test -z "$as_dir" && as_dir=.
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- $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
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-
- test -z "$ac_cv_prog_HAS_NC_CONFIG" && ac_cv_prog_HAS_NC_CONFIG="no"
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-
-if test x$HAS_NC_CONFIG = xno; then
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- echo "to succeed."
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- echo "If you installed the netcdf library (and nc-config) in a standard location, nc-config"
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- echo "./configure --with-nc-config=/sw/dist/netcdf4/bin/nc-config"
- echo " "
- echo "Special note for R users:"
- echo "-------------------------"
- echo "To pass the configure flag to R, use something like this:"
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- echo " "
- echo "where you should replace /home/joe/bin etc. with the location where you have"
- echo "installed the nc-config script that came with the netcdf 4 distribution."
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-fi
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-echo "Output of nc-config --all:"
-$NC_CONFIG_FULLQUAL --all
-echo "---"
-NETCDF_CC=`$NC_CONFIG_FULLQUAL --cc`
-NETCDF_LDFLAGS=`$NC_CONFIG_FULLQUAL --libs`
-NETCDF_CPPFLAGS=`$NC_CONFIG_FULLQUAL --cflags`
-NETCDF_VERSION=`$NC_CONFIG_FULLQUAL --version`
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- v2=`expr "$word" : '-L/'`
- if test $v2 -eq 3; then
- slibdir=${word:2}
- NETCDF_RPATH="$NETCDF_RPATH -Wl,-rpath,$slibdir"
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-NETCDF_V4=`$NC_CONFIG_FULLQUAL --has-nc4`
-
-$as_echo "@%:@define HAVE_NETCDF 1" >>confdefs.h
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-$as_echo "@%:@define HAVE_NETCDF4 1" >>confdefs.h
-
-fi
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-echo "Netcdf library was compiled with C compiler: $NETCDF_CC"
-
-
-
-
-
-
-
-if test $NETCDF_V4 = "no"; then
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- echo "ncdf4 REQUIRES the netcdf library be version 4 or above,"
- echo "AND installed with HDF-5 support (i.e., the netcdf library must be"
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- echo "the full version of netcdf-4 with HDF-5 support, then please install"
- echo "the old, deprecated ncdf package instead."
- echo "-------------------------------------------------------------------"
- exit -1
-fi
-
-HAVE_NETCDF=TRUE
-
-NETCDF_LDFLAGS="$NETCDF_RPATH $NETCDF_LDFLAGS $LDFLAGS"
-
-
-
-
-
-
-ac_config_files="$ac_config_files src/Makevars"
-
-cat >confcache <<\_ACEOF
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-_ACEOF
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- N
- s,\\\n,,
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-t clear
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-H
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-${
- g
- s/^\n//
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-'
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-
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-LIB@&t at OBJS=$ac_libobjs
-
-LTLIBOBJS=$ac_ltlibobjs
-
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-
-: "${CONFIG_STATUS=./config.status}"
-ac_write_fail=0
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-#! $SHELL
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-
-SHELL=\${CONFIG_SHELL-$SHELL}
-export SHELL
-_ASEOF
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-## -------------------- ##
-## M4sh Initialization. ##
-## -------------------- ##
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-# Be more Bourne compatible
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- *) :
- ;;
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-
-
-as_nl='
-'
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-# IFS
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-PS1='$ '
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-# CDPATH.
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-
-
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-{
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-{
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-{
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-$as_echo X/"$0" |
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- q
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- s//\1/
- q
- }
- /^X\/\(\/\).*/{
- s//\1/
- q
- }
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-
-# Avoid depending upon Character Ranges.
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- esac;;
-*)
- ECHO_N='-n';;
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- # ... but there are two gotchas:
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-s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
-$ac_datarootdir_hack
-"
-eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$ac_tmp/subs.awk" \
- >$ac_tmp/out || as_fn_error $? "could not create $ac_file" "$LINENO" 5
-
-test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
- { ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } &&
- { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' \
- "$ac_tmp/out"`; test -z "$ac_out"; } &&
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file contains a reference to the variable \`datarootdir'
-which seems to be undefined. Please make sure it is defined" >&5
-$as_echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
-which seems to be undefined. Please make sure it is defined" >&2;}
-
- rm -f "$ac_tmp/stdin"
- case $ac_file in
- -) cat "$ac_tmp/out" && rm -f "$ac_tmp/out";;
- *) rm -f "$ac_file" && mv "$ac_tmp/out" "$ac_file";;
- esac \
- || as_fn_error $? "could not create $ac_file" "$LINENO" 5
- ;;
-
-
-
- esac
-
-done # for ac_tag
-
-
-as_fn_exit 0
-_ACEOF
-ac_clean_files=$ac_clean_files_save
-
-test $ac_write_fail = 0 ||
- as_fn_error $? "write failure creating $CONFIG_STATUS" "$LINENO" 5
-
-
-# configure is writing to config.log, and then calls config.status.
-# config.status does its own redirection, appending to config.log.
-# Unfortunately, on DOS this fails, as config.log is still kept open
-# by configure, so config.status won't be able to write to it; its
-# output is simply discarded. So we exec the FD to /dev/null,
-# effectively closing config.log, so it can be properly (re)opened and
-# appended to by config.status. When coming back to configure, we
-# need to make the FD available again.
-if test "$no_create" != yes; then
- ac_cs_success=:
- ac_config_status_args=
- test "$silent" = yes &&
- ac_config_status_args="$ac_config_status_args --quiet"
- exec 5>/dev/null
- $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false
- exec 5>>config.log
- # Use ||, not &&, to avoid exiting from the if with $? = 1, which
- # would make configure fail if this is the last instruction.
- $ac_cs_success || as_fn_exit 1
-fi
-if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
- { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
-$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;}
-fi
-
-
-echo " "
-echo "********************** Results of ncdf4 package configure *******************"
-echo " "
-echo "netCDF v4 CPP flags = $NETCDF_CPPFLAGS"
-echo "netCDF v4 LD flags = $NETCDF_LDFLAGS"
-echo "netCDF v4 runtime path = $NETCDF_RPATH"
-echo " "
-echo "netCDF C compiler used = $NETCDF_CC"
-echo "R C compiler used = $CC $CFLAGS"
-echo " "
-echo "******************************************************************************"
-echo " "
-
-#---------------------------------------------------------------------
-# Check to see if a different compiler is being used for netcdf and R
-#---------------------------------------------------------------------
-set $NETCDF_CC
-NETCDF_CC_ARG1=$1
-set $CC
-R_CC_ARG1=$1
-if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1; then
-
- #------------------------------------------------------------------------------
- # By default, we emit a warning if the compilers of R and netcdf are different.
- # This happens with some regularity to naive users.
- #------------------------------------------------------------------------------
- emit_warning=1
-
- #-------------------------------------------------------------------------------------------------
- # Skip warning if one is gcc and the other is clang -- seems to bother some overly sensitive folks
- #-------------------------------------------------------------------------------------------------
- NETCDF_IS_GCC=0
- if echo "$NETCDF_CC_ARG1" | grep -q "gcc"; then
- NETCDF_IS_GCC=1
- fi
- NETCDF_IS_CLANG=0
- if echo "$NETCDF_CC_ARG1" | grep -q "clang"; then
- NETCDF_IS_CLANG=1
- fi
-
- R_IS_GCC=0
- if echo "$R_CC_ARG1" | grep -q "gcc"; then
- R_IS_GCC=1
- fi
- R_IS_CLANG=0
- if echo "$R_CC_ARG1" | grep -q "clang"; then
- R_IS_CLANG=1
- fi
-
- #-------------------------------------------------------------
- # We don't bother emitting the warning if the two compilers in
- # use are clang and gcc -- supposedly they are compatible
- #-------------------------------------------------------------
- if test $NETCDF_IS_CLANG -eq 1 -a $R_IS_GCC -eq 1; then
- emit_warning=0
- fi
- if test $NETCDF_IS_GCC -eq 1 -a $R_IS_CLANG -eq 1; then
- emit_warning=0
- fi
-
- #-----------------------------------------------------
- # Both same, but different exact names of compilers...
- # not sure if this actually guarantees success??
- #-----------------------------------------------------
- if test $NETCDF_IS_CLANG -eq 1 -a $R_IS_CLANG -eq 1; then
- emit_warning=0
- fi
- if test $NETCDF_IS_GCC -eq 1 -a $R_IS_GCC -eq 1; then
- emit_warning=0
- fi
-
- echo "netcdf cc arg1: $NETCDF_CC_ARG1 R cc arg1: $R_CC_ARG1 R_IS_GCC: $R_IS_GCC R_IS_CLANG: $R_IS_CLANG NETCDF_IS_GCC: $NETCDF_IS_GCC NETCDF_IS_CLANG: $NETCDF_IS_CLANG"
-
- if test $emit_warning -eq 1; then
- echo ">>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>"
- echo "WARNING: I *think* that different compilers are being used for R and the netcdf library!"
- echo "If that is the case, then you may not be able to install the ncdf4 package successfully. If installation"
- echo "fails, you must create a new version of the netcdf library that was compiled with the same"
- echo "compiler that was used to install R (see information above). Then, try installing the ncdf4"
- echo "package again using that new netcdf library. If necessary, you can specify the location of"
- echo "the new nc-config (the one that uses the same compiler used by R) like this:"
- echo " "
- echo "R CMD INSTALL --configure-args=\"--with-nc-config=/home/joe/bin/nc-config\""
- echo " "
- echo "(obviously, put in the correct path to YOUR nc-config, don't just use my example location!)"
- echo "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<"
- fi
-fi
-
diff --git a/tools/autom4te.cache/requests b/tools/autom4te.cache/requests
deleted file mode 100644
index 700ec19..0000000
--- a/tools/autom4te.cache/requests
+++ /dev/null
@@ -1,100 +0,0 @@
-# This file was generated by Autom4te Sun Nov 6 20:57:04 UTC 2011.
-# It contains the lists of macros which have been traced.
-# It can be safely removed.
-
- at request = (
- bless( [
- '0',
- 1,
- [
- '/usr/share/autoconf'
- ],
- [
- '/usr/share/autoconf/autoconf/autoconf.m4f',
- 'netcdf.m4',
- 'configure.in'
- ],
- {
- '_AM_AUTOCONF_VERSION' => 1,
- 'm4_pattern_allow' => 1,
- 'm4_pattern_forbid' => 1,
- 'include' => 1,
- 'AC_DEFUN_ONCE' => 1,
- 'm4_include' => 1,
- 'AC_DEFUN' => 1,
- 'AC_PATH_NETCDF' => 1,
- '_m4_warn' => 1,
- 'AU_DEFUN' => 1
- }
- ], 'Autom4te::Request' ),
- bless( [
- '1',
- 1,
- [
- '/usr/share/autoconf'
- ],
- [
- '/usr/share/autoconf/autoconf/autoconf.m4f',
- 'aclocal.m4',
- 'configure.in'
- ],
- {
- '_LT_AC_TAGCONFIG' => 1,
- 'AM_PROG_F77_C_O' => 1,
- 'AC_INIT' => 1,
- 'm4_pattern_forbid' => 1,
- '_AM_COND_IF' => 1,
- 'AC_CANONICAL_TARGET' => 1,
- 'AC_SUBST' => 1,
- 'AC_CONFIG_LIBOBJ_DIR' => 1,
- 'AC_FC_SRCEXT' => 1,
- 'AC_CANONICAL_HOST' => 1,
- 'AC_PROG_LIBTOOL' => 1,
- 'AM_INIT_AUTOMAKE' => 1,
- 'AM_PATH_GUILE' => 1,
- 'AC_CONFIG_SUBDIRS' => 1,
- 'AM_AUTOMAKE_VERSION' => 1,
- 'LT_CONFIG_LTDL_DIR' => 1,
- 'AC_REQUIRE_AUX_FILE' => 1,
- 'AC_CONFIG_LINKS' => 1,
- 'm4_sinclude' => 1,
- 'LT_SUPPORTED_TAG' => 1,
- 'AM_MAINTAINER_MODE' => 1,
- 'AM_NLS' => 1,
- 'AM_GNU_GETTEXT_INTL_SUBDIR' => 1,
- 'AM_MAKEFILE_INCLUDE' => 1,
- '_m4_warn' => 1,
- 'AM_PROG_CXX_C_O' => 1,
- '_AM_COND_ENDIF' => 1,
- '_AM_MAKEFILE_INCLUDE' => 1,
- 'AM_ENABLE_MULTILIB' => 1,
- 'AM_SILENT_RULES' => 1,
- 'AM_PROG_MOC' => 1,
- 'AC_CONFIG_FILES' => 1,
- 'include' => 1,
- 'LT_INIT' => 1,
- 'AM_PROG_AR' => 1,
- 'AM_GNU_GETTEXT' => 1,
- 'AC_LIBSOURCE' => 1,
- 'AM_PROG_FC_C_O' => 1,
- 'AC_CANONICAL_BUILD' => 1,
- 'AC_FC_FREEFORM' => 1,
- 'AH_OUTPUT' => 1,
- '_AM_SUBST_NOTMAKE' => 1,
- 'AC_CONFIG_AUX_DIR' => 1,
- 'sinclude' => 1,
- 'AM_PROG_CC_C_O' => 1,
- 'm4_pattern_allow' => 1,
- 'AM_XGETTEXT_OPTION' => 1,
- 'AC_CANONICAL_SYSTEM' => 1,
- 'AM_CONDITIONAL' => 1,
- 'AC_CONFIG_HEADERS' => 1,
- 'AC_DEFINE_TRACE_LITERAL' => 1,
- 'AM_POT_TOOLS' => 1,
- 'm4_include' => 1,
- '_AM_COND_ELSE' => 1,
- 'AC_SUBST_TRACE' => 1
- }
- ], 'Autom4te::Request' )
- );
-
diff --git a/tools/autom4te.cache/traces.0 b/tools/autom4te.cache/traces.0
deleted file mode 100644
index a4c7c2e..0000000
--- a/tools/autom4te.cache/traces.0
+++ /dev/null
@@ -1,169 +0,0 @@
-m4trace:netcdf.m4:24: -1- AC_DEFUN([AC_PATH_NETCDF], [
-AC_ARG_WITH( nc_config, [ --with-nc-config=path to nc-config script from netcdf v4 package], NC_CONFIG=$withval)
-dnl
-dnl
-dnl =================================================================================
-dnl check for netcdf include directory
-dnl
-err=0
-if test x$NC_CONFIG = x; then
- NC_CONFIG_SHORT=nc-config
- NC_CONFIG_FULLQUAL=nc-config
- NC_CONFIG_PATH=$PATH
-else
- echo "user specified nc-config is $NC_CONFIG"
- NC_CONFIG_SHORT=`basename $NC_CONFIG`
- NC_CONFIG_FULLQUAL=$NC_CONFIG
- NC_CONFIG_PATH=`dirname $NC_CONFIG`
-fi
-AC_CHECK_PROG( HAS_NC_CONFIG, [$NC_CONFIG_SHORT], [yes], [no], [$NC_CONFIG_PATH] )
-if test x$HAS_NC_CONFIG = xno; then
- echo "-----------------------------------------------------------------------------------"
- echo "Error, nc-config not found or not executable. This is a script that comes with the"
- echo "netcdf library, version 4.1-beta2 or later, and must be present for configuration"
- echo "to succeed."
- echo " "
- echo "If you installed the netcdf library (and nc-config) in a standard location, nc-config"
- echo "should be found automatically. Otherwise, you can specify the full path and name of"
- echo "the nc-config script by passing the --with-nc-config=/full/path/nc-config argument"
- echo "flag to the configure script. For example:"
- echo " "
- echo "./configure --with-nc-config=/sw/dist/netcdf4/bin/nc-config"
- echo " "
- echo "Special note for R users:"
- echo "-------------------------"
- echo "To pass the configure flag to R, use something like this:"
- echo " "
- echo "R CMD INSTALL --configure-args=\"--with-nc-config=/home/joe/bin/nc-config\" ncdf4"
- echo " "
- echo "where you should replace /home/joe/bin etc. with the location where you have"
- echo "installed the nc-config script that came with the netcdf 4 distribution."
- echo "-----------------------------------------------------------------------------------"
- exit -1
-fi
-echo "Using nc-config: $NC_CONFIG_FULLQUAL"
-echo "Output of nc-config --all:"
-$NC_CONFIG_FULLQUAL --all
-echo "---"
-dnl
-NETCDF_CC=`$NC_CONFIG_FULLQUAL --cc`
-NETCDF_LDFLAGS=`$NC_CONFIG_FULLQUAL --libs`
-NETCDF_CPPFLAGS=`$NC_CONFIG_FULLQUAL --cflags`
-NETCDF_VERSION=`$NC_CONFIG_FULLQUAL --version`
-dnl
-dnl -------------------------------------------------------------------
-dnl Convert the --libs string to a rpath string.
-dnl Example input string:
-dnl "-L/home/pierce/src/packages/data/netcdf/netcdf-4.1.2/install/lib -lnetcdf -L/home/pierce/lib -lhdf5_hl -lhdf5 -lz -lcurl -Wl,-Bsymbolic-functions -lgssapi_krb5"
-dnl Example output string:
-dnl "-Wl,-rpath,/home/pierce/src/packages/data/netcdf/netcdf-4.1.2/install/lib -Wl,-rpath,/home/pierce/lib"
-dnl -------------------------------------------------------------------
-NETCDF_RPATH=' '
-echo "netcdf.m4: about to set rpath, here is source string: >$NETCDF_LDFLAGS<"
-for word in $NETCDF_LDFLAGS; do
- v2=`expr "$word" : '-L/'`
- if test $v2 -eq 3; then
- slibdir=${word:2}
- NETCDF_RPATH="$NETCDF_RPATH -Wl,-rpath,$slibdir"
- fi
-done
-echo "netcdf.m4: final rpath: $NETCDF_RPATH"
-dnl
-dnl The following will be either "yes" or "no"
-NETCDF_V4=`$NC_CONFIG_FULLQUAL --has-nc4`
-dnl
-dnl If we get here, we assume that netcdf exists. It might not if, for example,
-dnl the package was installed and nc-config is present, but then the libraries
-dnl were erased. Assume such deliberately broken behavior is not the case.
-dnl
-AC_DEFINE([HAVE_NETCDF],1,[Define if you have the NETCDF library, either v3 or v4])
-dnl
-if test x$NETCDF_V4 = xyes; then
- AC_DEFINE([HAVE_NETCDF4],1,[Define if you have version 4 of the NETCDF library])
-fi
-dnl -----------------------------------------------------------------------------------
-dnl At this piont, $NETCDF_V4 will be either "yes" or "no"
-dnl
-echo "Netcdf library version: $NETCDF_VERSION"
-echo "Netcdf library has version 4 interface present: $NETCDF_V4"
-echo "Netcdf library was compiled with C compiler: $NETCDF_CC"
-dnl
-dnl Export our variables
-dnl
-AC_SUBST(NETCDF_CPPFLAGS)
-AC_SUBST(NETCDF_LDFLAGS)
-AC_SUBST(NETCDF_LIBS)
-AC_SUBST(NETCDF_VERSION)
-AC_SUBST(NETCDF_CC)
-AC_SUBST(NETCDF_RPATH)
-dnl
-])
-m4trace:configure.in:1: -1- m4_pattern_forbid([^_?A[CHUM]_])
-m4trace:configure.in:1: -1- m4_pattern_forbid([_AC_])
-m4trace:configure.in:1: -1- m4_pattern_forbid([^LIBOBJS$], [do not use LIBOBJS directly, use AC_LIBOBJ (see section `AC_LIBOBJ vs LIBOBJS'])
-m4trace:configure.in:1: -1- m4_pattern_allow([^AS_FLAGS$])
-m4trace:configure.in:1: -1- m4_pattern_forbid([^_?m4_])
-m4trace:configure.in:1: -1- m4_pattern_forbid([^dnl$])
-m4trace:configure.in:1: -1- m4_pattern_forbid([^_?AS_])
-m4trace:configure.in:1: -1- m4_pattern_allow([^SHELL$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PATH_SEPARATOR$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_NAME$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_TARNAME$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_VERSION$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_STRING$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_BUGREPORT$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_URL$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^exec_prefix$])
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-m4trace:configure.in:1: -1- m4_pattern_allow([^program_transform_name$])
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-m4trace:configure.in:1: -1- m4_pattern_allow([^sbindir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^libexecdir$])
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-m4trace:configure.in:1: -1- m4_pattern_allow([^datadir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^sysconfdir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^sharedstatedir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^localstatedir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^includedir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^oldincludedir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^docdir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^infodir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^htmldir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^dvidir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^pdfdir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^psdir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^libdir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^localedir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^mandir$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_NAME$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_TARNAME$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_VERSION$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_STRING$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_BUGREPORT$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_URL$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^DEFS$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^ECHO_C$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^ECHO_N$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^ECHO_T$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^LIBS$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^build_alias$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^host_alias$])
-m4trace:configure.in:1: -1- m4_pattern_allow([^target_alias$])
-m4trace:configure.in:21: -1- AC_PATH_NETCDF
-m4trace:configure.in:21: -1- m4_pattern_allow([^HAS_NC_CONFIG$])
-m4trace:configure.in:21: -1- m4_pattern_allow([^HAVE_NETCDF$])
-m4trace:configure.in:21: -1- m4_pattern_allow([^HAVE_NETCDF4$])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_CPPFLAGS$])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_LDFLAGS$])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_LIBS$])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_VERSION$])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_CC$])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_RPATH$])
-m4trace:configure.in:37: -1- m4_pattern_allow([^NETCDF_CPPFLAGS$])
-m4trace:configure.in:38: -1- m4_pattern_allow([^NETCDF_LDFLAGS$])
-m4trace:configure.in:39: -1- m4_pattern_allow([^NETCDF_RPATH$])
-m4trace:configure.in:40: -1- m4_pattern_allow([^HAVE_NETCDF$])
-m4trace:configure.in:42: -1- _m4_warn([obsolete], [AC_OUTPUT should be used without arguments.
-You should run autoupdate.], [])
-m4trace:configure.in:42: -1- m4_pattern_allow([^LIB@&t at OBJS$])
-m4trace:configure.in:42: -1- m4_pattern_allow([^LTLIBOBJS$])
diff --git a/tools/autom4te.cache/traces.1 b/tools/autom4te.cache/traces.1
deleted file mode 100644
index 0533615..0000000
--- a/tools/autom4te.cache/traces.1
+++ /dev/null
@@ -1,208 +0,0 @@
-m4trace:aclocal.m4:15: -1- m4_include([netcdf.m4])
-m4trace:configure.in:1: -1- AC_INIT([src/Makevars.in])
-m4trace:configure.in:1: -1- m4_pattern_forbid([^_?A[CHUM]_])
-m4trace:configure.in:1: -1- m4_pattern_forbid([_AC_])
-m4trace:configure.in:1: -1- m4_pattern_forbid([^LIBOBJS$], [do not use LIBOBJS directly, use AC_LIBOBJ (see section `AC_LIBOBJ vs LIBOBJS'])
-m4trace:configure.in:1: -1- m4_pattern_allow([^AS_FLAGS$])
-m4trace:configure.in:1: -1- m4_pattern_forbid([^_?m4_])
-m4trace:configure.in:1: -1- m4_pattern_forbid([^dnl$])
-m4trace:configure.in:1: -1- m4_pattern_forbid([^_?AS_])
-m4trace:configure.in:1: -1- AC_SUBST([SHELL])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([SHELL])
-m4trace:configure.in:1: -1- m4_pattern_allow([^SHELL$])
-m4trace:configure.in:1: -1- AC_SUBST([PATH_SEPARATOR])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([PATH_SEPARATOR])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PATH_SEPARATOR$])
-m4trace:configure.in:1: -1- AC_SUBST([PACKAGE_NAME], [m4_ifdef([AC_PACKAGE_NAME], ['AC_PACKAGE_NAME'])])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([PACKAGE_NAME])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_NAME$])
-m4trace:configure.in:1: -1- AC_SUBST([PACKAGE_TARNAME], [m4_ifdef([AC_PACKAGE_TARNAME], ['AC_PACKAGE_TARNAME'])])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([PACKAGE_TARNAME])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_TARNAME$])
-m4trace:configure.in:1: -1- AC_SUBST([PACKAGE_VERSION], [m4_ifdef([AC_PACKAGE_VERSION], ['AC_PACKAGE_VERSION'])])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([PACKAGE_VERSION])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_VERSION$])
-m4trace:configure.in:1: -1- AC_SUBST([PACKAGE_STRING], [m4_ifdef([AC_PACKAGE_STRING], ['AC_PACKAGE_STRING'])])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([PACKAGE_STRING])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_STRING$])
-m4trace:configure.in:1: -1- AC_SUBST([PACKAGE_BUGREPORT], [m4_ifdef([AC_PACKAGE_BUGREPORT], ['AC_PACKAGE_BUGREPORT'])])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([PACKAGE_BUGREPORT])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_BUGREPORT$])
-m4trace:configure.in:1: -1- AC_SUBST([PACKAGE_URL], [m4_ifdef([AC_PACKAGE_URL], ['AC_PACKAGE_URL'])])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([PACKAGE_URL])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_URL$])
-m4trace:configure.in:1: -1- AC_SUBST([exec_prefix], [NONE])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([exec_prefix])
-m4trace:configure.in:1: -1- m4_pattern_allow([^exec_prefix$])
-m4trace:configure.in:1: -1- AC_SUBST([prefix], [NONE])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([prefix])
-m4trace:configure.in:1: -1- m4_pattern_allow([^prefix$])
-m4trace:configure.in:1: -1- AC_SUBST([program_transform_name], [s,x,x,])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([program_transform_name])
-m4trace:configure.in:1: -1- m4_pattern_allow([^program_transform_name$])
-m4trace:configure.in:1: -1- AC_SUBST([bindir], ['${exec_prefix}/bin'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([bindir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^bindir$])
-m4trace:configure.in:1: -1- AC_SUBST([sbindir], ['${exec_prefix}/sbin'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([sbindir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^sbindir$])
-m4trace:configure.in:1: -1- AC_SUBST([libexecdir], ['${exec_prefix}/libexec'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([libexecdir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^libexecdir$])
-m4trace:configure.in:1: -1- AC_SUBST([datarootdir], ['${prefix}/share'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([datarootdir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^datarootdir$])
-m4trace:configure.in:1: -1- AC_SUBST([datadir], ['${datarootdir}'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([datadir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^datadir$])
-m4trace:configure.in:1: -1- AC_SUBST([sysconfdir], ['${prefix}/etc'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([sysconfdir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^sysconfdir$])
-m4trace:configure.in:1: -1- AC_SUBST([sharedstatedir], ['${prefix}/com'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([sharedstatedir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^sharedstatedir$])
-m4trace:configure.in:1: -1- AC_SUBST([localstatedir], ['${prefix}/var'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([localstatedir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^localstatedir$])
-m4trace:configure.in:1: -1- AC_SUBST([includedir], ['${prefix}/include'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([includedir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^includedir$])
-m4trace:configure.in:1: -1- AC_SUBST([oldincludedir], ['/usr/include'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([oldincludedir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^oldincludedir$])
-m4trace:configure.in:1: -1- AC_SUBST([docdir], [m4_ifset([AC_PACKAGE_TARNAME],
- ['${datarootdir}/doc/${PACKAGE_TARNAME}'],
- ['${datarootdir}/doc/${PACKAGE}'])])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([docdir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^docdir$])
-m4trace:configure.in:1: -1- AC_SUBST([infodir], ['${datarootdir}/info'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([infodir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^infodir$])
-m4trace:configure.in:1: -1- AC_SUBST([htmldir], ['${docdir}'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([htmldir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^htmldir$])
-m4trace:configure.in:1: -1- AC_SUBST([dvidir], ['${docdir}'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([dvidir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^dvidir$])
-m4trace:configure.in:1: -1- AC_SUBST([pdfdir], ['${docdir}'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([pdfdir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^pdfdir$])
-m4trace:configure.in:1: -1- AC_SUBST([psdir], ['${docdir}'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([psdir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^psdir$])
-m4trace:configure.in:1: -1- AC_SUBST([libdir], ['${exec_prefix}/lib'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([libdir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^libdir$])
-m4trace:configure.in:1: -1- AC_SUBST([localedir], ['${datarootdir}/locale'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([localedir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^localedir$])
-m4trace:configure.in:1: -1- AC_SUBST([mandir], ['${datarootdir}/man'])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([mandir])
-m4trace:configure.in:1: -1- m4_pattern_allow([^mandir$])
-m4trace:configure.in:1: -1- AC_DEFINE_TRACE_LITERAL([PACKAGE_NAME])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_NAME$])
-m4trace:configure.in:1: -1- AH_OUTPUT([PACKAGE_NAME], [/* Define to the full name of this package. */
-@%:@undef PACKAGE_NAME])
-m4trace:configure.in:1: -1- AC_DEFINE_TRACE_LITERAL([PACKAGE_TARNAME])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_TARNAME$])
-m4trace:configure.in:1: -1- AH_OUTPUT([PACKAGE_TARNAME], [/* Define to the one symbol short name of this package. */
-@%:@undef PACKAGE_TARNAME])
-m4trace:configure.in:1: -1- AC_DEFINE_TRACE_LITERAL([PACKAGE_VERSION])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_VERSION$])
-m4trace:configure.in:1: -1- AH_OUTPUT([PACKAGE_VERSION], [/* Define to the version of this package. */
-@%:@undef PACKAGE_VERSION])
-m4trace:configure.in:1: -1- AC_DEFINE_TRACE_LITERAL([PACKAGE_STRING])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_STRING$])
-m4trace:configure.in:1: -1- AH_OUTPUT([PACKAGE_STRING], [/* Define to the full name and version of this package. */
-@%:@undef PACKAGE_STRING])
-m4trace:configure.in:1: -1- AC_DEFINE_TRACE_LITERAL([PACKAGE_BUGREPORT])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_BUGREPORT$])
-m4trace:configure.in:1: -1- AH_OUTPUT([PACKAGE_BUGREPORT], [/* Define to the address where bug reports for this package should be sent. */
-@%:@undef PACKAGE_BUGREPORT])
-m4trace:configure.in:1: -1- AC_DEFINE_TRACE_LITERAL([PACKAGE_URL])
-m4trace:configure.in:1: -1- m4_pattern_allow([^PACKAGE_URL$])
-m4trace:configure.in:1: -1- AH_OUTPUT([PACKAGE_URL], [/* Define to the home page for this package. */
-@%:@undef PACKAGE_URL])
-m4trace:configure.in:1: -1- AC_SUBST([DEFS])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([DEFS])
-m4trace:configure.in:1: -1- m4_pattern_allow([^DEFS$])
-m4trace:configure.in:1: -1- AC_SUBST([ECHO_C])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([ECHO_C])
-m4trace:configure.in:1: -1- m4_pattern_allow([^ECHO_C$])
-m4trace:configure.in:1: -1- AC_SUBST([ECHO_N])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([ECHO_N])
-m4trace:configure.in:1: -1- m4_pattern_allow([^ECHO_N$])
-m4trace:configure.in:1: -1- AC_SUBST([ECHO_T])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([ECHO_T])
-m4trace:configure.in:1: -1- m4_pattern_allow([^ECHO_T$])
-m4trace:configure.in:1: -1- AC_SUBST([LIBS])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([LIBS])
-m4trace:configure.in:1: -1- m4_pattern_allow([^LIBS$])
-m4trace:configure.in:1: -1- AC_SUBST([build_alias])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([build_alias])
-m4trace:configure.in:1: -1- m4_pattern_allow([^build_alias$])
-m4trace:configure.in:1: -1- AC_SUBST([host_alias])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([host_alias])
-m4trace:configure.in:1: -1- m4_pattern_allow([^host_alias$])
-m4trace:configure.in:1: -1- AC_SUBST([target_alias])
-m4trace:configure.in:1: -1- AC_SUBST_TRACE([target_alias])
-m4trace:configure.in:1: -1- m4_pattern_allow([^target_alias$])
-m4trace:configure.in:21: -1- AC_SUBST([HAS_NC_CONFIG])
-m4trace:configure.in:21: -1- AC_SUBST_TRACE([HAS_NC_CONFIG])
-m4trace:configure.in:21: -1- m4_pattern_allow([^HAS_NC_CONFIG$])
-m4trace:configure.in:21: -1- AC_DEFINE_TRACE_LITERAL([HAVE_NETCDF])
-m4trace:configure.in:21: -1- m4_pattern_allow([^HAVE_NETCDF$])
-m4trace:configure.in:21: -1- AH_OUTPUT([HAVE_NETCDF], [/* Define if you have the NETCDF library, either v3 or v4 */
-@%:@undef HAVE_NETCDF])
-m4trace:configure.in:21: -1- AC_DEFINE_TRACE_LITERAL([HAVE_NETCDF4])
-m4trace:configure.in:21: -1- m4_pattern_allow([^HAVE_NETCDF4$])
-m4trace:configure.in:21: -1- AH_OUTPUT([HAVE_NETCDF4], [/* Define if you have version 4 of the NETCDF library */
-@%:@undef HAVE_NETCDF4])
-m4trace:configure.in:21: -1- AC_SUBST([NETCDF_CPPFLAGS])
-m4trace:configure.in:21: -1- AC_SUBST_TRACE([NETCDF_CPPFLAGS])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_CPPFLAGS$])
-m4trace:configure.in:21: -1- AC_SUBST([NETCDF_LDFLAGS])
-m4trace:configure.in:21: -1- AC_SUBST_TRACE([NETCDF_LDFLAGS])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_LDFLAGS$])
-m4trace:configure.in:21: -1- AC_SUBST([NETCDF_LIBS])
-m4trace:configure.in:21: -1- AC_SUBST_TRACE([NETCDF_LIBS])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_LIBS$])
-m4trace:configure.in:21: -1- AC_SUBST([NETCDF_VERSION])
-m4trace:configure.in:21: -1- AC_SUBST_TRACE([NETCDF_VERSION])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_VERSION$])
-m4trace:configure.in:21: -1- AC_SUBST([NETCDF_CC])
-m4trace:configure.in:21: -1- AC_SUBST_TRACE([NETCDF_CC])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_CC$])
-m4trace:configure.in:21: -1- AC_SUBST([NETCDF_RPATH])
-m4trace:configure.in:21: -1- AC_SUBST_TRACE([NETCDF_RPATH])
-m4trace:configure.in:21: -1- m4_pattern_allow([^NETCDF_RPATH$])
-m4trace:configure.in:37: -1- AC_SUBST([NETCDF_CPPFLAGS])
-m4trace:configure.in:37: -1- AC_SUBST_TRACE([NETCDF_CPPFLAGS])
-m4trace:configure.in:37: -1- m4_pattern_allow([^NETCDF_CPPFLAGS$])
-m4trace:configure.in:38: -1- AC_SUBST([NETCDF_LDFLAGS])
-m4trace:configure.in:38: -1- AC_SUBST_TRACE([NETCDF_LDFLAGS])
-m4trace:configure.in:38: -1- m4_pattern_allow([^NETCDF_LDFLAGS$])
-m4trace:configure.in:39: -1- AC_SUBST([NETCDF_RPATH])
-m4trace:configure.in:39: -1- AC_SUBST_TRACE([NETCDF_RPATH])
-m4trace:configure.in:39: -1- m4_pattern_allow([^NETCDF_RPATH$])
-m4trace:configure.in:40: -1- AC_SUBST([HAVE_NETCDF])
-m4trace:configure.in:40: -1- AC_SUBST_TRACE([HAVE_NETCDF])
-m4trace:configure.in:40: -1- m4_pattern_allow([^HAVE_NETCDF$])
-m4trace:configure.in:42: -1- AC_CONFIG_FILES([src/Makevars])
-m4trace:configure.in:42: -1- _m4_warn([obsolete], [AC_OUTPUT should be used without arguments.
-You should run autoupdate.], [])
-m4trace:configure.in:42: -1- AC_SUBST([LIB@&t at OBJS], [$ac_libobjs])
-m4trace:configure.in:42: -1- AC_SUBST_TRACE([LIB@&t at OBJS])
-m4trace:configure.in:42: -1- m4_pattern_allow([^LIB@&t at OBJS$])
-m4trace:configure.in:42: -1- AC_SUBST([LTLIBOBJS], [$ac_ltlibobjs])
-m4trace:configure.in:42: -1- AC_SUBST_TRACE([LTLIBOBJS])
-m4trace:configure.in:42: -1- m4_pattern_allow([^LTLIBOBJS$])
-m4trace:configure.in:42: -1- AC_SUBST_TRACE([top_builddir])
-m4trace:configure.in:42: -1- AC_SUBST_TRACE([top_build_prefix])
-m4trace:configure.in:42: -1- AC_SUBST_TRACE([srcdir])
-m4trace:configure.in:42: -1- AC_SUBST_TRACE([abs_srcdir])
-m4trace:configure.in:42: -1- AC_SUBST_TRACE([top_srcdir])
-m4trace:configure.in:42: -1- AC_SUBST_TRACE([abs_top_srcdir])
-m4trace:configure.in:42: -1- AC_SUBST_TRACE([builddir])
-m4trace:configure.in:42: -1- AC_SUBST_TRACE([abs_builddir])
-m4trace:configure.in:42: -1- AC_SUBST_TRACE([abs_top_builddir])
diff --git a/tools/configure.in b/tools/configure.ac
similarity index 81%
rename from tools/configure.in
rename to tools/configure.ac
index e97e1eb..03329c6 100644
--- a/tools/configure.in
+++ b/tools/configure.ac
@@ -1,6 +1,6 @@
AC_INIT(src/Makevars.in)
-echo "configure.in: starting"
+echo "configure.ac: starting"
: ${R_HOME=`R RHOME`}
if test -z "${R_HOME}"; then
@@ -61,7 +61,8 @@ set $NETCDF_CC
NETCDF_CC_ARG1=$1
set $CC
R_CC_ARG1=$1
-if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1; then
+TEST_EMIT_WARNING=0
+if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1 -o $TEST_EMIT_WARNING -eq 1; then
#------------------------------------------------------------------------------
# By default, we emit a warning if the compilers of R and netcdf are different.
@@ -75,6 +76,11 @@ if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1; then
NETCDF_IS_GCC=0
if echo "$NETCDF_CC_ARG1" | grep -q "gcc"; then
NETCDF_IS_GCC=1
+ else
+ AC_PROG_CC([$NETCDF_CC_ARG1])
+ if test "z$GCC" = zyes; then
+ NETCDF_IS_GCC=1
+ fi
fi
NETCDF_IS_CLANG=0
if echo "$NETCDF_CC_ARG1" | grep -q "clang"; then
@@ -84,6 +90,11 @@ if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1; then
R_IS_GCC=0
if echo "$R_CC_ARG1" | grep -q "gcc"; then
R_IS_GCC=1
+ else
+ AC_PROG_CC([$R_CC_ARG1])
+ if test "z$GCC" = zyes; then
+ R_IS_GCC=1
+ fi
fi
R_IS_CLANG=0
if echo "$R_CC_ARG1" | grep -q "clang"; then
@@ -112,13 +123,16 @@ if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1; then
emit_warning=0
fi
- echo "netcdf cc arg1: $NETCDF_CC_ARG1 R cc arg1: $R_CC_ARG1 R_IS_GCC: $R_IS_GCC R_IS_CLANG: $R_IS_CLANG NETCDF_IS_GCC: $NETCDF_IS_GCC NETCDF_IS_CLANG: $NETCDF_IS_CLANG"
+ echo "netcdf cc arg1: $NETCDF_CC_ARG1 R cc arg1: $R_CC_ARG1 R_IS_GCC: $R_IS_GCC R_IS_CLANG: $R_IS_CLANG NETCDF_IS_GCC: $NETCDF_IS_GCC NETCDF_IS_CLANG: $NETCDF_IS_CLANG emit_warning: $emit_warning"
- if test $emit_warning -eq 1; then
- echo ">>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>"
- echo "WARNING: I *think* that different compilers are being used for R and the netcdf library!"
- echo "If that is the case, then you may not be able to install the ncdf4 package successfully. If installation"
- echo "fails, you must create a new version of the netcdf library that was compiled with the same"
+ if test $emit_warning -eq 1 -o $TEST_EMIT_WARNING -eq 1; then
+ echo " "
+ echo ">>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>"
+ echo "Dear ncdf4 user: The software configuration tool thinks that perhaps different compilers are being"
+ echo "used for R and the netcdf library. However, we all know that software configuration tools are"
+ echo "not that smart. If ncdf4 compiles fine for you, then please ignore this message. However, if"
+ echo "installation fails, it might be that you are using different compilers for R and the netcdf library."
+ echo "If so, then you must create a new version of the netcdf library that was compiled with the same"
echo "compiler that was used to install R (see information above). Then, try installing the ncdf4"
echo "package again using that new netcdf library. If necessary, you can specify the location of"
echo "the new nc-config (the one that uses the same compiler used by R) like this:"
@@ -126,7 +140,9 @@ if test x$NETCDF_CC_ARG1 != x$R_CC_ARG1; then
echo "R CMD INSTALL --configure-args=\"--with-nc-config=/home/joe/bin/nc-config\""
echo " "
echo "(obviously, put in the correct path to YOUR nc-config, don't just use my example location!)"
- echo "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<"
+ echo "<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<"
+ echo " "
fi
+
fi
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-science/packages/r-cran-ncdf4.git
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