[sfepy] 01/03: Merge tag 'upstream/2016.1'
Anton Gladky
gladk at moszumanska.debian.org
Fri Apr 22 22:10:03 UTC 2016
This is an automated email from the git hooks/post-receive script.
gladk pushed a commit to branch master
in repository sfepy.
commit 06d4f5d48e5a4e62d5f5a4eac71fe718b587d15d
Merge: 8e3f40c 54a2bd3
Author: Anton Gladky <gladk at debian.org>
Date: Sat Apr 23 00:02:15 2016 +0200
Merge tag 'upstream/2016.1'
Upstream version 2016.1
AUTHORS | 2 +
INSTALL | 11 +-
MANIFEST.in | 2 +-
build_helpers.py | 88 +-
doc/Makefile | 6 +
doc/archived_news.rst | 23 +
doc/conf.py | 12 +
doc/dev/gitwash/branch_dropdown.png | Bin 16311 -> 0 bytes
doc/dev/gitwash/branch_list.png | Bin 13361 -> 0 bytes
doc/dev/gitwash/branch_list_compare.png | Bin 10679 -> 0 bytes
doc/dev/gitwash/configure_git.rst | 158 -
doc/dev/gitwash/development_workflow.rst | 415 --
doc/dev/gitwash/dot2_dot3.rst | 28 -
doc/dev/gitwash/following_latest.rst | 36 -
doc/dev/gitwash/forking_button.png | Bin 13092 -> 0 bytes
doc/dev/gitwash/forking_hell.rst | 33 -
doc/dev/gitwash/git_development.rst | 16 -
doc/dev/gitwash/git_install.rst | 26 -
doc/dev/gitwash/git_intro.rst | 18 -
doc/dev/gitwash/git_links.inc | 61 -
doc/dev/gitwash/git_resources.rst | 59 -
doc/dev/gitwash/index.rst | 13 -
doc/dev/gitwash/known_projects.inc | 41 -
doc/dev/gitwash/links.inc | 4 -
doc/dev/gitwash/maintainer_workflow.rst | 96 -
doc/dev/gitwash/patching.rst | 134 -
doc/dev/gitwash/pull_button.png | Bin 12893 -> 0 bytes
doc/dev/gitwash/set_up_fork.rst | 68 -
doc/dev/gitwash/this_project.inc | 5 -
doc/developer_guide.rst | 426 +-
doc/examples.rst | 2 +
doc/images/mat_optim/iterations.png | Bin 0 -> 52969 bytes
doc/images/mat_optim/macro_micro.png | Bin 0 -> 88060 bytes
doc/images/mat_optim/microstruct_rve.png | Bin 0 -> 218969 bytes
doc/images/mat_optim/tensile_test.png | Bin 0 -> 48384 bytes
doc/images/sfepy_gui.png | Bin 32596 -> 0 bytes
doc/images/splinebox/spbox.png | Bin 0 -> 407904 bytes
doc/images/splinebox/spbox_cp.png | Bin 0 -> 18424 bytes
doc/images/splinebox/spregion2d.png | Bin 0 -> 376100 bytes
doc/images/splinebox/spregion2d_def.png | Bin 0 -> 289223 bytes
doc/index.rst | 3 +
doc/installation.rst | 26 +-
doc/links.inc | 7 +
doc/make.bat | 8 +
doc/manpages.rst | 21 +
doc/mat_optim.rst | 166 +
doc/mat_optim/homogenization_opt_src.rst | 8 +
doc/mat_optim/linear_elasticity_opt_src.rst | 8 +
doc/mat_optim/material_opt_src.rst | 8 +
doc/news.rst | 42 +-
doc/release_notes.rst | 1191 ++++++
doc/release_tasks.rst | 2 +-
doc/splinebox.rst | 183 +
doc/src/script/show_mesh_info.rst | 6 +
doc/src/sfepy/discrete/common/extmods/_fmfield.rst | 6 +
.../sfepy/discrete/common/extmods/_geommech.rst | 6 +
doc/src/sfepy/discrete/common/extmods/assemble.rst | 6 +
doc/src/sfepy/discrete/common/extmods/cmesh.rst | 6 +
.../sfepy/discrete/common/extmods/crefcoors.rst | 6 +
doc/src/sfepy/discrete/common/extmods/mappings.rst | 6 +
doc/src/sfepy/discrete/common/global_interp.rst | 6 +
doc/src/sfepy/discrete/fem/extmods/_fmfield.rst | 6 -
doc/src/sfepy/discrete/fem/extmods/_geommech.rst | 6 -
doc/src/sfepy/discrete/fem/extmods/assemble.rst | 6 -
doc/src/sfepy/discrete/fem/extmods/cmesh.rst | 6 -
doc/src/sfepy/discrete/fem/extmods/mappings.rst | 6 -
doc/src/sfepy/discrete/fem/fea.rst | 6 -
doc/src/sfepy/discrete/fem/global_interp.rst | 6 -
doc/src/sfepy/discrete/mass_operator.rst | 6 -
doc/src/sfepy/linalg/sympy_operators.rst | 6 +
doc/src/sfepy/mesh/bspline.rst | 6 +
doc/src/sfepy/parallel/evaluate.rst | 6 +
doc/src/sfepy/parallel/parallel.rst | 6 +
doc/src/sfepy/parallel/plot_parallel_dofs.rst | 6 +
doc/src/sfepy/terms/terms_new.rst | 6 -
doc/terms_overview.rst | 12 +-
doc/theory.rst | 2 +-
doc/tutorial.rst | 4 +-
doc/users_guide.rst | 165 +-
examples/diffusion/darcy_flow_multicomp.py | 110 +
examples/diffusion/laplace_1d.py | 2 +-
.../laplace_shifted_periodic.py | 2 +-
examples/diffusion/poisson_parallel_interactive.py | 472 +++
examples/diffusion/time_advection_diffusion.py | 80 +
examples/diffusion/time_poisson_explicit.py | 16 +-
examples/diffusion/time_poisson_interactive.py | 256 ++
examples/homogenization/homogenization_opt.py | 170 +
examples/homogenization/linear_elasticity_opt.py | 103 +
examples/homogenization/material_opt.py | 154 +
.../rs_correctors.py | 222 +-
examples/large_deformation/active_fibres.py | 4 +-
examples/large_deformation/balloon.py | 288 ++
.../compare_elastic_materials.py | 160 +-
examples/large_deformation/hyperelastic.py | 4 +-
examples/large_deformation/perfusion_tl.py | 4 +-
examples/linear_elasticity/its2D_2.py | 3 +-
examples/linear_elasticity/its2D_3.py | 4 +-
examples/linear_elasticity/its2D_interactive.py | 19 +-
.../linear_elastic_interactive.py} | 0
.../modal_analysis.py | 122 +-
examples/linear_elasticity/nodal_lcbcs.py | 218 +
examples/miscellaneous/compare_scalar_terms.py | 119 -
examples/miscellaneous/compare_vector_terms.py | 114 -
.../live_plot => miscellaneous}/live_plot.py | 0
examples/{biot => multi_physics}/__init__.py | 0
examples/{biot => multi_physics}/biot.py | 0
examples/{biot => multi_physics}/biot_npbc.py | 0
.../{biot => multi_physics}/biot_npbc_lagrange.py | 0
.../multi_physics/biot_parallel_interactive.py | 469 +++
.../piezo.py => multi_physics/piezo_elasticity.py} | 133 +-
.../thermal_electric.py | 4 +-
.../thermo_elasticity.py | 0
.../thermo_elasticity_ess.py | 0
examples/standalone/elastic_materials/__init__.py | 0
examples/standalone/elastic_materials/el3.mesh | 25 -
.../standalone/homogenized_elasticity/__init__.py | 0
examples/standalone/interactive/__init__.py | 0
examples/standalone/live_plot/__init__.py | 0
examples/standalone/thermal_electric/__init__.py | 0
examples/thermo_elasticity/__init__.py | 0
.../meshes => meshes/2d/special}/osteonT1_11.mesh | 0
meshes/3d/matrix_fiber_rand.vtk | 4428 ++++++++++++++++++++
meshes/3d/special/cross3d.mesh | 45 +
meshes/3d/unit_ball.mesh | 1481 +++++++
meshes/various_formats/abaqus_quad.inp | 120 +-
meshes/various_formats/abaqus_quad_tri.inp | 130 +-
meshes/various_formats/abaqus_tri.inp | 168 +-
postproc.py | 12 +
script/convert_mesh.py | 14 +-
script/eval_ns_forms.py | 1 +
script/extract_surface.py | 17 +-
script/gen_gallery.py | 3 +-
script/plot_mesh.py | 4 +-
script/save_basis.py | 24 +-
script/show_authors.py | 25 +-
script/show_mesh_info.py | 35 +
script/sync_module_docs.py | 1 -
scripts-common/extractor.py | 1 +
scripts-common/homogen.py | 1 +
scripts-common/phonon.py | 1 +
scripts-common/postproc.py | 1 +
scripts-common/probe.py | 1 +
scripts-common/run_tests.py | 1 +
scripts-common/schroedinger.py | 1 +
scripts-common/shaper.py | 1 +
scripts-common/simple.py | 1 +
scripts-common/test_install.py | 1 +
setup.py | 136 +-
sfepy-run | 85 +
sfepy/applications/pde_solver_app.py | 10 +-
sfepy/base/base.py | 2 +-
sfepy/discrete/common/__init__.py | 1 +
sfepy/discrete/common/dof_info.py | 6 +-
sfepy/discrete/common/domain.py | 32 +-
.../discrete/common/extmods}/__init__.py | 0
.../discrete/{fem => common}/extmods/_fmfield.pxd | 2 +
.../discrete/{fem => common}/extmods/_fmfield.pyx | 0
.../discrete/{fem => common}/extmods/_geommech.pxd | 2 +-
.../discrete/{fem => common}/extmods/_geommech.pyx | 4 +-
.../discrete/{fem => common}/extmods/assemble.pyx | 0
sfepy/discrete/common/extmods/cmesh.pxd | 123 +
sfepy/discrete/{fem => common}/extmods/cmesh.pyx | 388 +-
sfepy/discrete/{fem => common}/extmods/common.h | 0
.../{fem => common}/extmods/common_python.c | 0
sfepy/discrete/common/extmods/crefcoors.pyx | 240 ++
sfepy/discrete/{fem => common}/extmods/fmfield.c | 22 +-
sfepy/discrete/{fem => common}/extmods/fmfield.h | 1 +
sfepy/discrete/{fem => common}/extmods/geommech.c | 0
sfepy/discrete/{fem => common}/extmods/geommech.h | 0
sfepy/discrete/common/extmods/geomtrans.c | 71 +
sfepy/discrete/{fem => common}/extmods/geomtrans.h | 6 +-
.../discrete/{fem => common}/extmods/mappings.pxd | 0
.../discrete/{fem => common}/extmods/mappings.pyx | 0
sfepy/discrete/{fem => common}/extmods/mesh.c | 113 +
sfepy/discrete/{fem => common}/extmods/mesh.h | 7 +
sfepy/discrete/common/extmods/meshutils.c | 430 ++
sfepy/discrete/common/extmods/meshutils.h | 26 +
sfepy/discrete/common/extmods/refcoors.c | 482 +++
sfepy/discrete/common/extmods/refcoors.h | 49 +
sfepy/discrete/{fem => common}/extmods/refmaps.c | 0
sfepy/discrete/{fem => common}/extmods/refmaps.h | 0
sfepy/discrete/{fem => common}/extmods/setup.py | 17 +-
sfepy/discrete/{fem => common}/extmods/sort.c | 0
sfepy/discrete/{fem => common}/extmods/sort.h | 0
sfepy/discrete/{fem => common}/extmods/types.h | 0
sfepy/discrete/{fem => common}/extmods/types.pxd | 0
.../discrete/{fem => common}/extmods/version.h.in | 0
sfepy/discrete/common/fields.py | 167 +-
sfepy/discrete/common/global_interp.py | 357 ++
sfepy/discrete/common/mappings.py | 81 +-
sfepy/discrete/common/region.py | 296 +-
sfepy/discrete/common/setup.py | 2 +
sfepy/discrete/equations.py | 87 +-
sfepy/discrete/evaluate.py | 12 +-
sfepy/discrete/fem/domain.py | 212 +-
sfepy/discrete/fem/extmods/__init__.py | 1 -
sfepy/discrete/fem/extmods/bases.pyx | 725 +---
sfepy/discrete/fem/extmods/geomtrans.c | 52 -
sfepy/discrete/fem/extmods/lagrange.c | 352 +-
sfepy/discrete/fem/extmods/lagrange.h | 83 +-
sfepy/discrete/fem/extmods/lobatto_bases.pyx | 6 +-
sfepy/discrete/fem/extmods/meshutils.c | 414 --
sfepy/discrete/fem/extmods/meshutils.h | 24 -
sfepy/discrete/fem/extmods/setup.py | 67 +-
sfepy/discrete/fem/facets.py | 10 +-
sfepy/discrete/fem/fe_surface.py | 27 +-
sfepy/discrete/fem/fea.py | 472 ---
sfepy/discrete/fem/fields_base.py | 881 ++--
sfepy/discrete/fem/fields_hierarchic.py | 308 +-
sfepy/discrete/fem/fields_nodal.py | 225 +-
sfepy/discrete/fem/global_interp.py | 126 -
sfepy/discrete/fem/lcbc_operators.py | 157 +-
sfepy/discrete/fem/mappings.py | 17 +-
sfepy/discrete/fem/mesh.py | 594 +--
sfepy/discrete/fem/meshio.py | 302 +-
sfepy/discrete/fem/poly_spaces.py | 122 +-
sfepy/discrete/fem/refine.py | 167 +-
sfepy/discrete/fem/utils.py | 65 +-
sfepy/discrete/functions.py | 18 +-
sfepy/discrete/iga/domain.py | 13 +-
sfepy/discrete/iga/extmods/igac.pyx | 238 +-
sfepy/discrete/iga/extmods/nurbs.c | 302 +-
sfepy/discrete/iga/extmods/nurbs.h | 53 +-
sfepy/discrete/iga/extmods/setup.py | 2 +-
sfepy/discrete/iga/fields.py | 65 +-
sfepy/discrete/iga/mappings.py | 2 +-
sfepy/discrete/iga/plot_nurbs.py | 11 +-
sfepy/discrete/mass_operator.py | 32 -
sfepy/discrete/materials.py | 90 +-
sfepy/discrete/parse_regions.py | 13 +-
sfepy/discrete/probes.py | 68 +-
sfepy/discrete/problem.py | 388 +-
sfepy/discrete/projections.py | 27 +-
sfepy/discrete/variables.py | 374 +-
sfepy/homogenization/coefs_base.py | 9 +-
sfepy/homogenization/recovery.py | 38 +-
sfepy/linalg/extmods/crcm.pyx | 2 +-
sfepy/linalg/extmods/setup.py | 2 +-
sfepy/linalg/geometry.py | 6 +-
sfepy/linalg/sparse.py | 2 +-
{tests => sfepy/linalg}/sympy_operators.py | 2 +-
sfepy/linalg/utils.py | 53 +-
sfepy/mechanics/membranes.py | 9 +-
sfepy/mesh/bspline.py | 71 +-
sfepy/mesh/geom_tools.py | 6 +-
sfepy/mesh/mesh_generators.py | 321 +-
sfepy/mesh/mesh_tools.py | 87 +-
sfepy/mesh/splinebox.py | 386 +-
.../standalone => sfepy/parallel}/__init__.py | 0
sfepy/parallel/evaluate.py | 62 +
sfepy/parallel/parallel.py | 806 ++++
sfepy/parallel/plot_parallel_dofs.py | 139 +
sfepy/{discrete/common => parallel}/setup.py | 0
sfepy/postprocess/plot_cmesh.py | 61 +-
sfepy/postprocess/plot_dofs.py | 73 +-
sfepy/postprocess/plot_facets.py | 35 +-
sfepy/postprocess/plot_quadrature.py | 22 +-
sfepy/postprocess/probes_vtk.py | 28 +-
sfepy/postprocess/sources.py | 40 +-
sfepy/postprocess/time_history.py | 30 +-
sfepy/postprocess/utils_vtk.py | 1 -
sfepy/postprocess/viewer.py | 27 +-
sfepy/setup.py | 1 +
sfepy/solvers/eigen.py | 17 +-
sfepy/solvers/ls.py | 205 +-
sfepy/solvers/nls.py | 102 +
sfepy/solvers/oseen.py | 12 +-
sfepy/solvers/solvers.py | 6 +
sfepy/solvers/ts.py | 64 +-
sfepy/solvers/ts_solvers.py | 150 +-
sfepy/terms/__init__.py | 2 +-
sfepy/terms/extmods/setup.py | 2 +-
sfepy/terms/extmods/terms.pyx | 71 +-
sfepy/terms/extmods/terms_op.c | 76 +-
sfepy/terms/extmods/terms_op.h | 5 +-
sfepy/terms/terms.py | 490 +--
sfepy/terms/terms_acoustic.py | 166 -
sfepy/terms/terms_basic.py | 18 +-
sfepy/terms/terms_biot.py | 8 +-
sfepy/terms/terms_diffusion.py | 73 +-
sfepy/terms/terms_dot.py | 181 +-
sfepy/terms/terms_elastic.py | 25 +-
sfepy/terms/terms_fibres.py | 82 +-
sfepy/terms/terms_hyperelastic_base.py | 104 +-
sfepy/terms/terms_hyperelastic_tl.py | 19 +-
sfepy/terms/terms_hyperelastic_ul.py | 313 +-
sfepy/terms/terms_membrane.py | 24 +-
sfepy/terms/terms_navier_stokes.py | 2 +-
sfepy/terms/terms_new.py | 259 --
sfepy/terms/terms_piezo.py | 55 +
sfepy/terms/terms_point.py | 11 +-
sfepy/terms/terms_surface.py | 21 +-
sfepy/version.py | 12 +-
simple.py | 13 +
test_install.py | 21 +-
tests/test_assembling.py | 8 +-
tests/test_cmesh.py | 4 +-
tests/test_conditions.py | 255 ++
tests/test_domain.py | 26 +-
tests/test_ebcs.py | 79 -
tests/test_eigenvalue_solvers.py | 10 +-
tests/test_elasticity_small_strain.py | 6 +-
tests/test_functions.py | 14 +-
tests/test_input_balloon.py | 7 +
tests/test_input_biot.py | 2 +-
tests/test_input_biot_npbc.py | 2 +-
tests/test_input_biot_npbc_lagrange.py | 2 +-
tests/test_input_darcy_flow_multicomp.py | 6 +
tests/test_input_nodal_lcbcs.py | 6 +
...put_piezo.py => test_input_piezo_elasticity.py} | 4 +-
tests/test_input_thermo_elasticity.py | 2 +-
tests/test_input_thermo_elasticity_ess.py | 2 +-
tests/test_input_time_advection_diffusion.py | 7 +
tests/test_lcbcs.py | 2 +-
tests/test_linear_solvers.py | 86 +-
tests/test_linearization.py | 9 +-
tests/test_mesh_expand.py | 30 +
tests/test_mesh_generators.py | 118 +-
tests/test_mesh_interp.py | 136 +-
tests/test_mesh_smoothing.py | 9 +-
tests/test_meshio.py | 102 +-
tests/test_msm_symbolic.py | 161 +-
tests/test_normals.py | 2 +-
tests/test_parsing.py | 3 +-
tests/test_poly_spaces.py | 32 +-
tests/test_projections.py | 57 +
tests/test_ref_coors.py | 137 +
tests/test_regions.py | 6 +-
tests/test_splinebox.py | 92 +-
tests/test_term_call_modes.py | 27 +-
tests/test_term_consistency.py | 3 +-
331 files changed, 20750 insertions(+), 9560 deletions(-)
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