[gmsh] branch master updated (7d67e96 -> 7ebf27d)
Anton Gladky
gladk at moszumanska.debian.org
Thu Aug 11 19:04:22 UTC 2016
This is an automated email from the git hooks/post-receive script.
gladk pushed a change to branch master
in repository gmsh.
from 7d67e96 Update changelog.
new 28f4474 d/copyright.
adds e5df2d8 Imported Upstream version 2.13.1+dfsg1
new 4ecd62a Merge branch 'upstream'
new ca54124 Update/refresh patches.
new 2773007 Enable MPI on arm* and mips*. (Closes: #824541)
new 37117dd Replace OMPI_MCA_orte_rsh_agent by OMPI_MCA_plm_rsh_agent. Thanks Graham.
new 7ebf27d Update changelog.
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
CMakeLists.txt | 54 +-
Common/CommandLine.cpp | 2 +
Common/Context.cpp | 1 +
Common/Context.h | 4 +-
Common/DefaultOptions.h | 42 +-
Common/Gmsh.cpp | 9 +-
Common/GmshDefines.h | 1 +
Common/GmshMessage.cpp | 62 +-
Common/GmshMessage.h | 6 +-
Common/GmshSocket.h | 10 +-
Common/OS.cpp | 1 -
Common/OpenFile.cpp | 17 +-
Common/Options.cpp | 100 +-
Common/Options.h | 5 +
Common/gmshLocalNetworkClient.cpp | 17 +-
Common/onelab.h | 315 +-
Common/onelabUtils.cpp | 51 +-
Fltk/FlGui.cpp | 29 +-
Fltk/drawContextFltkStringTexture.cpp | 2 +-
Fltk/fileDialogs.cpp | 131 +-
Fltk/gamepadWindow.cpp | 17 +-
Fltk/graphicWindow.cpp | 20 +-
Fltk/onelabGroup.cpp | 4 +-
Fltk/optionWindow.cpp | 30 +-
Fltk/solverButton.cpp | 10 +-
Fltk/viewButton.cpp | 44 +-
Fltk/visibilityWindow.cpp | 4 +-
Geo/ExtrudeParams.cpp | 22 +-
Geo/GEdge.cpp | 31 +-
Geo/GEdge.h | 2 +-
Geo/GEdgeLoop.h | 5 +-
Geo/GEntity.cpp | 64 +
Geo/GEntity.h | 17 +-
Geo/GFace.cpp | 164 +-
Geo/GFace.h | 17 +-
Geo/GModel.cpp | 338 +-
Geo/GModel.h | 7 +
Geo/GModelFactory.cpp | 219 +-
Geo/GModelFactory.h | 8 +
Geo/GModelIO_CGNS.cpp | 6 +-
Geo/GModelIO_GEO.cpp | 102 +-
Geo/GModelIO_MED.cpp | 3 +-
Geo/GModelIO_MSH.cpp | 9 +-
Geo/GModelIO_MSH2.cpp | 31 +-
Geo/GModelVertexArrays.cpp | 10 +-
Geo/GRegion.h | 4 +
Geo/Geo.cpp | 93 +-
Geo/Geo.h | 14 +
Geo/GeoInterpolation.cpp | 6 +
Geo/GeoStringInterface.cpp | 19 +-
Geo/GeomMeshMatcher.cpp | 86 +-
Geo/MEdge.h | 7 +
Geo/MElement.cpp | 107 +-
Geo/MElement.h | 21 +-
Geo/MFace.cpp | 4 +-
Geo/MHexahedron.cpp | 8 -
Geo/MHexahedron.h | 8 +-
Geo/MLine.cpp | 9 +-
Geo/MLine.h | 1 -
Geo/MPrism.cpp | 8 -
Geo/MPrism.h | 15 +-
Geo/MPyramid.cpp | 39 +-
Geo/MPyramid.h | 29 +-
Geo/MQuadrangle.cpp | 84 +-
Geo/MQuadrangle.h | 24 +-
Geo/MSubElement.cpp | 22 +
Geo/MSubElement.h | 59 +-
Geo/MTetrahedron.cpp | 8 -
Geo/MTetrahedron.h | 1 -
Geo/MTriangle.cpp | 75 +-
Geo/MTriangle.h | 15 +-
Geo/OCCEdge.cpp | 1 +
Geo/OCCFace.cpp | 19 +-
Geo/OCCIncludes.h | 3 +-
Geo/OCC_Connect.h | 3 +-
Geo/SVector3.h | 6 +-
Geo/discreteDiskFace.cpp | 941 +-
Geo/discreteDiskFace.h | 206 +-
Geo/discreteEdge.cpp | 97 +-
Geo/discreteEdge.h | 8 +-
Geo/discreteFace.cpp | 653 +-
Geo/discreteFace.h | 22 +-
Geo/discreteRegion.cpp | 35 +
Geo/discreteRegion.h | 1 +
Geo/gmshEdge.cpp | 2 +-
Geo/gmshRegion.cpp | 2 +-
Graphics/drawGlyph.cpp | 4 +-
Graphics/drawScales.cpp | 6 +-
Graphics/gl2ps.cpp | 2 +-
Mesh/BDS.cpp | 32 +
Mesh/BackgroundMesh.cpp | 21 +-
Mesh/BoundaryLayers.cpp | 178 +-
Mesh/CMakeLists.txt | 2 +-
Mesh/Field.cpp | 412 +-
Mesh/Field.h | 1 +
Mesh/Generator.cpp | 73 +-
Mesh/Generator.h | 1 +
Mesh/HighOrder.cpp | 154 +-
Mesh/delaunay3d.cpp | 356 +-
Mesh/delaunay3d.h | 10 +-
Mesh/delaunay3d_private.h | 207 +-
Mesh/delaunay_refinement.cpp | 137 +-
Mesh/delaunay_refinement.h | 19 +-
Mesh/directions3D.cpp | 959 +-
Mesh/meshGEdge.cpp | 55 +-
Mesh/meshGFace.cpp | 521 +-
Mesh/meshGFaceDelaunayInsertion.cpp | 3 +
Mesh/meshGFaceElliptic.cpp | 8 +-
Mesh/meshGFaceOptimize.cpp | 321 +-
Mesh/meshGFaceRecombine.cpp | 321 +-
Mesh/meshGFaceRecombine.h | 40 +-
Mesh/meshGRegion.cpp | 405 +-
Mesh/meshGRegion.h | 4 +-
Mesh/meshGRegion19036.cpp | 1856 -
Mesh/meshGRegionBoundaryRecovery.cpp | 15307 +----
Mesh/meshGRegionBoundaryRecovery.h | 873 +-
Mesh/meshGRegionDelaunayInsertion.cpp | 98 +-
Mesh/meshGRegionRelocateVertex.cpp | 63 +-
Mesh/meshGRegionRelocateVertex.h | 1 +
Mesh/meshPartition.cpp | 8 +-
Mesh/meshRefine.cpp | 18 +-
Mesh/qualityMeasures.cpp | 1 +
Mesh/qualityMeasuresJacobian.cpp | 1928 +
Mesh/qualityMeasuresJacobian.h | 217 +
Mesh/simple3D.cpp | 180 +-
Mesh/surfaceFiller.cpp | 267 +-
...eshGRegionBoundaryRecovery.cpp => tetgenBR.cxx} | 20734 ++++---
Mesh/tetgenBR.h | 2588 +
Mesh/yamakawa.cpp | 771 +-
Mesh/yamakawa.h | 20 +
Numeric/BasisFactory.cpp | 42 +
Numeric/BasisFactory.h | 56 +-
Numeric/CondNumBasis.cpp | 4 +-
Numeric/CondNumBasis.h | 3 +-
Numeric/ElementType.cpp | 4 +
Numeric/ElementType.h | 3 +
Numeric/FuncSpaceData.cpp | 16 +
Numeric/FuncSpaceData.h | 17 +-
Numeric/GaussQuadratureQuad.cpp | 2 +
Numeric/JacobianBasis.cpp | 80 +-
Numeric/JacobianBasis.h | 23 +-
Numeric/MetricBasis.cpp | 1384 +-
Numeric/MetricBasis.h | 100 +-
Numeric/Numeric.cpp | 26 +-
Numeric/Numeric.h | 21 +-
Numeric/bezierBasis.cpp | 423 +-
Numeric/bezierBasis.h | 70 +-
Numeric/fullMatrix.h | 5 +-
Numeric/nodalBasis.cpp | 125 +-
Numeric/pointsGenerators.cpp | 124 +
Numeric/pointsGenerators.h | 1 +
Numeric/polynomialBasis.h | 1 -
Numeric/pyramidalBasis.cpp | 26 +-
Numeric/pyramidalBasis.h | 7 +-
Parser/Gmsh.l | 2 +
Parser/Gmsh.tab.cpp | 14759 ++---
Parser/Gmsh.tab.hpp | 1039 +-
Parser/Gmsh.y | 208 +-
Parser/Gmsh.yy.cpp | 1677 +-
Plugin/AnalyseCurvedMesh.cpp | 953 +-
Plugin/AnalyseCurvedMesh.h | 109 +-
Plugin/CMakeLists.txt | 1 +
Plugin/CurvedBndDist.cpp | 3 +-
Plugin/FaultZone.cpp | 6 +-
Plugin/HarmonicToTime.cpp | 2 +-
Plugin/Lambda2.cpp | 9 +-
Plugin/PluginManager.cpp | 9 +-
Plugin/ShowNeighborElements.cpp | 138 +
Plugin/ShowNeighborElements.h | 44 +
Plugin/ThinLayerFixMesh.cpp | 2 +-
Post/ColorTable.cpp | 1 +
Post/PView.cpp | 7 +-
Post/PView.h | 25 +-
Post/PViewData.h | 6 +-
Post/PViewDataGModel.cpp | 41 +-
Post/PViewVertexArrays.cpp | 2 -
Post/PViewX3D.cpp | 185 +-
Post/PViewX3D.h | 60 +-
Post/adaptiveData.cpp | 21 +-
Post/adaptiveData.h | 105 +-
Post/shapeFunctions.h | 21 +-
Solver/STensor43.h | 4 +
Solver/STensor53.h | 10 +-
Solver/STensor63.h | 12 +-
Solver/elasticitySolver.cpp | 333 +-
Solver/elasticitySolver.h | 24 +-
Solver/functionSpace.h | 15 +-
Solver/linearSystemCSR.h | 10 +-
Solver/linearSystemPETSc.h | 2 +-
Solver/linearSystemPETSc.hpp | 7 +-
Solver/solverAlgorithms.h | 2 +-
Solver/terms.cpp | 2 +-
Solver/thermicSolver.cpp | 75 +-
Solver/thermicSolver.h | 8 +-
contrib/ANN/CMakeLists.txt | 24 -
contrib/ANN/Copyright.txt | 47 -
contrib/ANN/License.txt | 450 -
contrib/ANN/README.txt | 2 -
contrib/ANN/include/ANN/ANN.h | 829 -
contrib/ANN/include/ANN/ANNperf.h | 226 -
contrib/ANN/include/ANN/ANNx.h | 170 -
contrib/ANN/src/ANN.cpp | 199 -
contrib/ANN/src/bd_fix_rad_search.cpp | 61 -
contrib/ANN/src/bd_pr_search.cpp | 62 -
contrib/ANN/src/bd_search.cpp | 61 -
contrib/ANN/src/bd_tree.cpp | 417 -
contrib/ANN/src/bd_tree.h | 100 -
contrib/ANN/src/brute.cpp | 109 -
contrib/ANN/src/kd_dump.cpp | 446 -
contrib/ANN/src/kd_fix_rad_search.cpp | 183 -
contrib/ANN/src/kd_fix_rad_search.h | 44 -
contrib/ANN/src/kd_pr_search.cpp | 219 -
contrib/ANN/src/kd_pr_search.h | 49 -
contrib/ANN/src/kd_search.cpp | 210 -
contrib/ANN/src/kd_search.h | 48 -
contrib/ANN/src/kd_split.cpp | 428 -
contrib/ANN/src/kd_split.h | 85 -
contrib/ANN/src/kd_tree.cpp | 405 -
contrib/ANN/src/kd_tree.h | 197 -
contrib/ANN/src/kd_util.cpp | 439 -
contrib/ANN/src/kd_util.h | 124 -
contrib/ANN/src/perf.cpp | 134 -
contrib/ANN/src/pr_queue.h | 125 -
contrib/ANN/src/pr_queue_k.h | 118 -
contrib/HighOrderMeshOptimizer/CADDistances.cpp | 1 +
contrib/HighOrderMeshOptimizer/CMakeLists.txt | 1 +
contrib/HighOrderMeshOptimizer/OptHomMesh.cpp | 1 +
.../HighOrderMeshOptimizer/OptHomPeriodicity.cpp | 278 +
.../{OptHomFastCurving.h => OptHomPeriodicity.h} | 39 +-
contrib/HighOrderMeshOptimizer/OptHomRun.cpp | 91 +-
contrib/HighOrderMeshOptimizer/OptHomRun.h | 3 +-
contrib/MathEx/lesser.txt | 1012 +-
contrib/MathEx/license.txt | 70 +-
contrib/Netgen/libsrc/general/parthreads.cpp | 80 +-
contrib/Netgen/libsrc/general/profiler.cpp | 4 +-
contrib/Netgen/libsrc/general/profiler.hpp | 2 +
contrib/Netgen/nglib/ng_occ.cpp | 284 +-
.../testcases/3D solid-X-Y plane.xmt_txt | 156 +-
.../testcases/3D solid-Z-Y plane.xmt_txt | 146 +-
.../testcases/Cutting-punch.xmt_txt | 248 +-
.../testcases/Cutting-punch2.xmt_txt | 238 +-
.../testcases/Hole CAD model.xmt_txt | 288 +-
.../testcases/Work-piece.xmt_txt | 178 +-
.../interface_parasolid/testcases/blend1.xmt_txt | 240 +-
.../interface_parasolid/testcases/blend2.xmt_txt | 218 +-
.../interface_parasolid/testcases/blend3.xmt_txt | 292 +-
.../interface_parasolid/testcases/brut.xmt_txt | 950 +-
.../interface_parasolid/testcases/bsurf.xmt_txt | 98 +-
.../interface_parasolid/testcases/fan.xmt_txt | 2352 +-
.../testcases/instance_block.xmt_txt | 142 +-
.../testcases/instance_block_inscribed.xmt_txt | 180 +-
.../testcases/instance_block_tool.xmt_txt | 160 +-
.../testcases/instance_cuboid_tool.xmt_txt | 144 +-
.../testcases/instance_cuboid_tool2.xmt_txt | 168 +-
.../testcases/instance_h_shape.xmt_txt | 334 +-
.../testcases/instance_multi_level.xmt_txt | 444 +-
.../testcases/instance_prism_tool.xmt_txt | 172 +-
.../testcases/instance_sheet_body.xmt_txt | 128 +-
.../testcases/instance_solid_cyl.xmt_txt | 86 +-
.../testcases/instance_solid_cyl2.xmt_txt | 86 +-
.../testcases/sheet_body.xmt_txt | 46 +-
contrib/Salome/Partition_Inter2d.hxx | 11 +-
contrib/Salome/Partition_Inter2d.ixx | 3 +-
contrib/Salome/Partition_Inter3d.cxx | 4 +-
contrib/Salome/Partition_Inter3d.hxx | 14 +-
contrib/Salome/Partition_Loop.cxx | 3 +-
contrib/Salome/Partition_Loop.hxx | 1 -
contrib/Salome/Partition_Loop2d.cxx | 4 +-
contrib/Salome/Partition_Loop2d.hxx | 1 -
contrib/Salome/Partition_Loop3d.cxx | 3 +-
contrib/Salome/Partition_Loop3d.hxx | 5 +-
contrib/Salome/Partition_Spliter.cxx | 4 +-
contrib/Salome/Partition_Spliter.hxx | 6 +-
contrib/gmm/gmm_except.h | 52 +-
contrib/gmm/gmm_std.h | 4 +-
contrib/lbfgs/alglibinternal.cpp | 22700 +++----
contrib/lbfgs/alglibinternal.h | 1576 +-
contrib/lbfgs/alglibmisc.cpp | 6716 +--
contrib/lbfgs/alglibmisc.h | 1432 +-
contrib/lbfgs/ap.cpp | 19262 +++---
contrib/lbfgs/ap.h | 2508 +-
contrib/lbfgs/linalg.cpp | 60398 +++++++++----------
contrib/lbfgs/linalg.h | 8202 +--
contrib/lbfgs/optimization.cpp | 32472 +++++-----
contrib/lbfgs/optimization.h | 7062 +--
contrib/lbfgs/solvers.cpp | 11330 ++--
contrib/lbfgs/solvers.h | 2706 +-
contrib/lbfgs/stdafx.h | 4 +-
contrib/mobile/Android/AndroidManifest.xml | 4 +-
.../Android/src/org/geuz/onelab/Parameter.java | 2 +-
.../src/org/geuz/onelab/ParameterNumber.java | 39 +-
.../src/org/geuz/onelab/ParameterString.java | 10 +-
contrib/mobile/README.txt | 31 +-
contrib/mobile/androidUtils.cpp | 4 +-
contrib/mobile/drawContext.cpp | 8 +-
contrib/mobile/iOS/Onelab/AboutViewController.mm | 6 +-
contrib/mobile/iOS/Onelab/Onelab-Info.plist | 4 +-
contrib/mobile/iOS/Onelab/Parameter.mm | 2 +-
.../mobile/iOS/Onelab/ParametersViewController.mm | 2 +-
contrib/mobile/utils/Android.cmake | 2250 +-
contrib/onelab/python/onelab.py | 52 +-
contrib/zipper/example.cpp | 138 +-
contrib/zipper/unzipper.cpp | 364 +-
contrib/zipper/unzipper.h | 88 +-
contrib/zipper/zipper.cpp | 292 +-
contrib/zipper/zipper.h | 78 +-
debian/changelog | 11 +
debian/copyright | 2 +-
debian/patches/10_change_shared_library_name.patch | 16 +-
debian/patches/110_fix_cmake_hdf5.patch | 10 +-
debian/patches/120_relax_python_vers.patch | 8 +-
debian/patches/130_gcc6_fix.patch | 27 -
debian/patches/140_fix_java.patch | 17 -
debian/patches/150_fix_texifile.patch | 15 -
debian/patches/20_skip_license_file.patch | 10 +-
debian/patches/30_delete_gl2ps_from_source.patch | 16 +-
.../40_switch_from_opencascade_to_oce.patch | 12 +-
debian/patches/60_fix_gmshpy_import.patch | 6 +-
debian/patches/70_fix_libdir.patch | 16 +-
debian/patches/80_fix_script_header.patch | 8 +-
.../patches/90_fix_java_wrapper_compilation.patch | 6 +-
debian/patches/series | 3 -
debian/rules | 4 +-
demos/component8.step | 2482 +-
demos/square_regular.geo | 17 +
doc/CREDITS.txt | 42 +-
doc/VERSIONS.txt | 10 +-
doc/gmsh.html | 34 +-
doc/texinfo/cmake_options.texi | 12 +-
doc/texinfo/gmsh.texi | 38 +-
doc/texinfo/opt_fields.texi | 77 +-
doc/texinfo/opt_mesh.texi | 7 +-
doc/texinfo/opt_solver.texi | 2 +-
utils/api_demos/CMakeLists.txt | 3 +
utils/api_demos/mainRemesh.cpp | 45 +
utils/converters/gid/gmsh2_2gid.c | 242 +-
utils/converters/maya/edgeVertexOrder.mel | 132 +-
utils/converters/maya/gmsh.mel | 434 +-
utils/misc/gmsh_app.plist | 2 +-
utils/misc/package_gmsh_getdp.sh | 2 +-
utils/solvers/c++/GmshSocket.h | 20 +-
utils/solvers/c++/onelab.h | 323 +-
wrappers/gmshpy/CMakeLists.txt | 154 +-
wrappers/java/WrapGmsh.i | 6 +-
344 files changed, 133113 insertions(+), 142878 deletions(-)
delete mode 100644 Mesh/meshGRegion19036.cpp
create mode 100644 Mesh/qualityMeasuresJacobian.cpp
create mode 100644 Mesh/qualityMeasuresJacobian.h
copy Mesh/{meshGRegionBoundaryRecovery.cpp => tetgenBR.cxx} (64%)
create mode 100644 Mesh/tetgenBR.h
create mode 100644 Plugin/ShowNeighborElements.cpp
create mode 100644 Plugin/ShowNeighborElements.h
delete mode 100644 contrib/ANN/CMakeLists.txt
delete mode 100644 contrib/ANN/Copyright.txt
delete mode 100644 contrib/ANN/License.txt
delete mode 100644 contrib/ANN/README.txt
delete mode 100644 contrib/ANN/include/ANN/ANN.h
delete mode 100644 contrib/ANN/include/ANN/ANNperf.h
delete mode 100644 contrib/ANN/include/ANN/ANNx.h
delete mode 100644 contrib/ANN/src/ANN.cpp
delete mode 100644 contrib/ANN/src/bd_fix_rad_search.cpp
delete mode 100644 contrib/ANN/src/bd_pr_search.cpp
delete mode 100644 contrib/ANN/src/bd_search.cpp
delete mode 100644 contrib/ANN/src/bd_tree.cpp
delete mode 100644 contrib/ANN/src/bd_tree.h
delete mode 100644 contrib/ANN/src/brute.cpp
delete mode 100644 contrib/ANN/src/kd_dump.cpp
delete mode 100644 contrib/ANN/src/kd_fix_rad_search.cpp
delete mode 100644 contrib/ANN/src/kd_fix_rad_search.h
delete mode 100644 contrib/ANN/src/kd_pr_search.cpp
delete mode 100644 contrib/ANN/src/kd_pr_search.h
delete mode 100644 contrib/ANN/src/kd_search.cpp
delete mode 100644 contrib/ANN/src/kd_search.h
delete mode 100644 contrib/ANN/src/kd_split.cpp
delete mode 100644 contrib/ANN/src/kd_split.h
delete mode 100644 contrib/ANN/src/kd_tree.cpp
delete mode 100644 contrib/ANN/src/kd_tree.h
delete mode 100644 contrib/ANN/src/kd_util.cpp
delete mode 100644 contrib/ANN/src/kd_util.h
delete mode 100644 contrib/ANN/src/perf.cpp
delete mode 100644 contrib/ANN/src/pr_queue.h
delete mode 100644 contrib/ANN/src/pr_queue_k.h
create mode 100644 contrib/HighOrderMeshOptimizer/OptHomPeriodicity.cpp
copy contrib/HighOrderMeshOptimizer/{OptHomFastCurving.h => OptHomPeriodicity.h} (68%)
delete mode 100644 debian/patches/130_gcc6_fix.patch
delete mode 100644 debian/patches/140_fix_java.patch
delete mode 100644 debian/patches/150_fix_texifile.patch
create mode 100644 demos/square_regular.geo
create mode 100644 utils/api_demos/mainRemesh.cpp
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