[dolfin] branch experimental updated (2e61a9e -> c406c11)
Drew Parsons
dparsons at moszumanska.debian.org
Sun Jan 21 15:01:00 UTC 2018
This is an automated email from the git hooks/post-receive script.
dparsons pushed a change to branch experimental
in repository dolfin.
from 2e61a9e drop VTK support
adds 3907d05 New upstream version 2017.2.0.post0
adds 1b7b3d7 Update upstream source from tag 'upstream/2017.2.0.post0'
adds 4caf89d mark version 2017.2.0.post0 in changelog
adds b950d9a Standards-Version: 4.1.3
adds d26a586 debhelper compatibility level 11
adds cd607b2 update versions of dependencies:
adds bd10cf9 debian/control: Priority: optional not extra
adds 1a30fea FEniCS version dependencies are taken as >=2017.2 and <=2017.3~
adds c406c11 upload 2017.2.0.post0-1exp1 to experimental
No new revisions were added by this update.
Summary of changes:
.circleci/config.yml | 32 +-
CMakeLists.txt | 54 +-
ChangeLog.rst | 13 +
bench/fem/jit/python/bench_fem_jit_python | 2 +-
cmake/modules/FindGMP.cmake | 19 +
cmake/modules/FindMPFR.cmake | 83 +
cmake/templates/dolfin.conf.in | 3 -
debian/changelog | 15 +-
debian/compat | 2 +-
debian/control | 36 +-
debian/rules | 2 +-
demo/CMakeLists.txt | 2 +-
demo/documented/bcs/python/demo_bcs.py | 2 +-
demo/documented/biharmonic/cpp/Biharmonic.ufl.rst | 2 +-
.../biharmonic/python/demo_biharmonic.py.rst | 2 +-
.../documented/cahn-hilliard/cpp/documentation.rst | 3 +-
demo/documented/cahn-hilliard/cpp/main.cpp | 4 +-
.../cahn-hilliard/python/demo_cahn-hilliard.py.rst | 2 +-
demo/documented/neumann-poisson/cpp/main.cpp | 3 +-
.../python/demo_neumann-poisson.py.rst | 6 +-
demo/documented/poisson/cpp/main.cpp.rst | 3 +-
demo/documented/stokes-iterative/cpp/main.cpp | 3 +-
.../python/demo_stokes-iterative.py.rst | 6 +-
.../python/demo_subdomains-poisson.py | 4 +-
.../subdomains-poisson/python/documentation.rst | 21 +-
.../python/demo_tensor-weighted-poisson.py | 15 +-
.../python/demo_advection-diffusion.py | 2 +-
.../auto-adaptive-navier-stokes/cpp/main.cpp | 4 +-
.../buckling-tao/python/demo_buckling-tao.py | 2 +-
.../python/demo_collision-detection.py | 2 +-
.../curl-curl/python/demo_curl-curl.py | 2 +-
.../cpp/AdvectionDiffusion.ufl | 2 +-
.../python/demo_dg-advection-diffusion.py | 2 +-
demo/undocumented/dg-poisson/cpp/Poisson.ufl | 2 +-
demo/undocumented/dg-poisson/cpp/main.cpp | 2 +-
.../dg-poisson/python/demo_dg-poisson.py | 4 +-
demo/undocumented/elasticity/cpp/main.cpp | 4 +-
.../elasticity/python/demo_elasticity.py | 2 +-
.../ghost-mesh/python/demo_ghost-mesh.py | 2 +-
demo/undocumented/lift-drag/cpp/main.cpp | 2 +-
.../lift-drag/python/demo_lift-drag.py | 2 +-
demo/undocumented/multimesh-3d/cpp/CMakeLists.txt | 38 +
.../multimesh-3d/cpp/MultiMeshH10Norm.ufl | 20 +
.../multimesh-3d/cpp/MultiMeshL2Norm.ufl | 20 +
.../cpp/MultiMeshPoisson.ufl | 9 +-
demo/undocumented/multimesh-3d/cpp/main.cpp | 224 +
.../multimesh-poisson/cpp/MultiMeshPoisson.ufl | 10 +-
.../undocumented/multimesh-poisson}/cpp/P1.ufl | 2 +-
demo/undocumented/multimesh-poisson/cpp/main.cpp | 51 +-
.../python/demo_multimesh-poisson.py | 53 +-
demo/undocumented/multimesh-quadrature/cpp/README | 2 +
.../propeller_2d_coarse.xml.gz | Bin
.../propeller_2d_fine.xml.gz | Bin
.../python/demo_multimesh-quadrature.py | 147 +
.../multimesh-stokes/cpp/MultiMeshStokes.ufl | 10 +-
demo/undocumented/multimesh-stokes/cpp/Stokes.ufl | 52 -
demo/undocumented/multimesh-stokes/cpp/main.cpp | 42 +-
demo/undocumented/multimesh-stokes/cpp/reference.h | 49 -
.../python/demo_multimesh-stokes.py | 52 +-
.../multimesh/python/demo_multimesh.py | 138 -
.../python/demo_multistage-solver.py | 2 +-
.../python/demo_overlapping-regions.py | 2 +-
demo/undocumented/parallel-refinement/cpp/main.cpp | 16 +-
.../python/demo_parallel-refinement.py | 8 +-
.../point-integral/python/demo_point-integral.py | 2 +-
.../refinement/python/demo_refinement.py | 2 +-
doc/source/conf.py | 4 +-
dolfin/CMakeLists.txt | 10 +
dolfin/common/Variable.h | 2 +-
dolfin/fem/AssemblerBase.cpp | 62 +-
dolfin/fem/DirichletBC.cpp | 2 +-
dolfin/fem/DiscreteOperators.cpp | 4 +-
dolfin/fem/DofMap.h | 2 +-
dolfin/fem/DofMapBuilder.cpp | 8 +-
dolfin/fem/DofMapBuilder.h | 1 +
dolfin/fem/MultiMeshAssembler.cpp | 219 +-
dolfin/fem/MultiMeshAssembler.h | 3 +
dolfin/fem/MultiMeshDirichletBC.cpp | 47 +
dolfin/fem/MultiMeshDirichletBC.h | 18 +-
dolfin/fem/MultiMeshDofMap.cpp | 47 +
dolfin/fem/MultiMeshDofMap.h | 6 +
dolfin/fem/MultiMeshForm.cpp | 28 +
dolfin/fem/MultiMeshForm.h | 18 +
dolfin/fem/PETScDMCollection.cpp | 1 +
dolfin/fem/PETScDMCollection.h | 2 +-
dolfin/fem/UFC.h | 7 +-
dolfin/fem/fem_utils.cpp | 1 +
dolfin/function/Function.cpp | 9 +-
dolfin/function/FunctionAssigner.cpp | 1 +
dolfin/function/FunctionSpace.h | 3 +-
dolfin/function/MultiMeshCoefficientAssigner.cpp | 7 +-
dolfin/function/MultiMeshCoefficientAssigner.h | 2 +-
dolfin/function/MultiMeshFunction.cpp | 165 +-
dolfin/function/MultiMeshFunction.h | 62 +
dolfin/function/MultiMeshFunctionSpace.cpp | 33 +-
dolfin/function/MultiMeshFunctionSpace.h | 7 +-
dolfin/generation/BoxMesh.cpp | 90 +-
dolfin/generation/BoxMesh.h | 29 +-
dolfin/generation/CMakeLists.txt | 4 -
dolfin/generation/IntervalMesh.cpp | 2 +-
dolfin/generation/RectangleMesh.cpp | 77 +-
dolfin/generation/RectangleMesh.h | 42 +-
dolfin/generation/SphericalShellMesh.cpp | 2 +-
dolfin/generation/UnitCubeMesh.h | 32 +-
dolfin/generation/UnitDiscMesh.cpp | 2 +-
dolfin/generation/UnitHexMesh.cpp | 111 -
dolfin/generation/UnitHexMesh.h | 56 -
dolfin/generation/UnitQuadMesh.cpp | 96 -
dolfin/generation/UnitQuadMesh.h | 59 -
dolfin/generation/UnitSquareMesh.h | 39 +-
dolfin/generation/UnitTetrahedronMesh.cpp | 2 +-
dolfin/generation/UnitTriangleMesh.cpp | 2 +-
dolfin/generation/dolfin_generation.h | 2 -
dolfin/geometry/BoundingBoxTree2D.h | 6 +-
dolfin/geometry/CGALExactArithmetic.h | 1152 ++
dolfin/geometry/CMakeLists.txt | 17 +-
dolfin/geometry/CollisionDetection.cpp | 1158 --
dolfin/geometry/CollisionDetection.h | 296 -
dolfin/geometry/CollisionPredicates.cpp | 1053 ++
dolfin/geometry/CollisionPredicates.h | 316 +
dolfin/geometry/ConvexTriangulation.cpp | 603 +
dolfin/geometry/ConvexTriangulation.h | 84 +
dolfin/geometry/GenericBoundingBoxTree.cpp | 14 +-
dolfin/geometry/GeometryDebugging.cpp | 151 +
dolfin/geometry/GeometryDebugging.h | 83 +
dolfin/geometry/GeometryPredicates.cpp | 214 +
dolfin/geometry/GeometryPredicates.h | 70 +
dolfin/geometry/GeometryTools.h | 120 +
dolfin/geometry/IntersectionConstruction.cpp | 862 ++
dolfin/geometry/IntersectionConstruction.h | 292 +
dolfin/geometry/IntersectionTriangulation.cpp | 1365 ---
dolfin/geometry/IntersectionTriangulation.h | 214 -
dolfin/geometry/Point.h | 10 +-
dolfin/geometry/SimplexQuadrature.cpp | 3944 ++++++-
dolfin/geometry/SimplexQuadrature.h | 237 +-
dolfin/geometry/dolfin_geometry.h | 1 +
dolfin/geometry/intersect.cpp | 12 +-
dolfin/geometry/predicates.cpp | 2372 ++++
dolfin/geometry/predicates.h | 59 +
dolfin/io/HDF5File.cpp | 18 +-
dolfin/io/HDF5Utility.cpp | 4 +-
dolfin/io/VTKWriter.cpp | 12 +-
dolfin/io/X3DFile.cpp | 4 +-
dolfin/io/XDMFFile.cpp | 43 +-
dolfin/io/XMLMesh.cpp | 6 +-
dolfin/la/EigenVector.cpp | 12 +-
dolfin/la/GenericMatrix.cpp | 4 +-
dolfin/la/GenericMatrix.h | 5 +-
dolfin/la/PETScObject.h | 1 +
dolfin/la/SLEPcEigenSolver.cpp | 41 +-
dolfin/la/SLEPcEigenSolver.h | 3 -
dolfin/log/Logger.cpp | 17 +-
dolfin/log/Logger.h | 5 +-
dolfin/log/log.cpp | 5 +
dolfin/log/log.h | 3 +
dolfin/mesh/BoundaryComputation.cpp | 6 +-
dolfin/mesh/CMakeLists.txt | 1 +
dolfin/{log/Event.cpp => mesh/Cell.cpp} | 39 +-
dolfin/mesh/Cell.h | 33 +-
dolfin/mesh/CellType.cpp | 46 +-
dolfin/mesh/CellType.h | 17 +-
dolfin/mesh/DistributedMeshTools.cpp | 4 +-
dolfin/mesh/DynamicMeshEditor.cpp | 8 +-
dolfin/mesh/Edge.h | 12 +-
dolfin/mesh/Face.h | 12 +-
dolfin/mesh/Facet.h | 12 +-
dolfin/mesh/HexahedronCell.cpp | 14 -
dolfin/mesh/HexahedronCell.h | 17 +-
dolfin/mesh/IntervalCell.cpp | 19 +-
dolfin/mesh/IntervalCell.h | 20 +-
dolfin/mesh/LocalMeshData.cpp | 2 +-
dolfin/mesh/Mesh.cpp | 9 +-
dolfin/mesh/Mesh.h | 27 +-
dolfin/mesh/MeshColoring.cpp | 6 +-
dolfin/mesh/MeshColoring.h | 4 +-
dolfin/mesh/MeshEditor.cpp | 42 +-
dolfin/mesh/MeshEditor.h | 18 -
dolfin/mesh/MeshFunction.h | 8 +-
dolfin/mesh/MeshHierarchy.cpp | 10 +-
dolfin/mesh/MeshQuality.cpp | 10 +-
dolfin/mesh/MeshQuality.h | 4 +-
dolfin/mesh/MeshRenumbering.cpp | 8 +-
dolfin/mesh/MeshTopology.cpp | 5 +-
dolfin/mesh/MeshTopology.h | 4 +-
dolfin/mesh/MeshTransformation.cpp | 18 +-
dolfin/mesh/MeshTransformation.h | 13 +-
dolfin/mesh/MultiMesh.cpp | 1495 ++-
dolfin/mesh/MultiMesh.h | 202 +-
dolfin/mesh/PointCell.cpp | 19 +-
dolfin/mesh/PointCell.h | 19 +-
dolfin/mesh/QuadrilateralCell.cpp | 14 -
dolfin/mesh/QuadrilateralCell.h | 17 +-
dolfin/mesh/TetrahedronCell.cpp | 19 +-
dolfin/mesh/TetrahedronCell.h | 20 +-
dolfin/mesh/TopologyComputation.cpp | 4 +-
dolfin/mesh/TriangleCell.cpp | 19 +-
dolfin/mesh/TriangleCell.h | 18 +-
dolfin/mesh/Vertex.h | 12 +-
dolfin/refinement/BisectionRefinement1D.cpp | 2 +-
dolfin/refinement/LocalMeshCoarsening.cpp | 12 +-
dolfin/refinement/ParallelRefinement.cpp | 14 +-
dolfin/refinement/ParallelRefinement.h | 8 +-
dolfin/refinement/RegularCutRefinement.cpp | 3 +-
dolfin/refinement/refine.cpp | 22 +-
dolfin/refinement/refine.h | 2 +-
dolfin/swig/la/post.i | 13 +-
dolfin/swig/mesh/post.i | 42 +
dolfin/swig/mesh/pre.i | 91 +
dolfin/swig/shared_ptr_classes.i | 1 +
dolfin/swig/typemaps/std_map.i | 27 +
dolfin/swig/typemaps/std_vector.i | 22 +-
python/CMakeLists.txt | 36 +-
{cmake/modules => python/cmake}/FindPETSc4py.cmake | 22 +-
python/doc/Makefile | 20 +
python/doc/source/api.rst | 21 +-
python/dolfin/__init__.py | 58 +-
python/dolfin/common/plotting.py | 26 +-
python/dolfin/common/timer.py | 6 +-
python/dolfin/fem/adaptivesolving.py | 12 +-
python/dolfin/fem/assembling.py | 6 +-
python/dolfin/fem/form.py | 5 +-
python/dolfin/fem/formmanipulations.py | 24 +-
python/dolfin/fem/norms.py | 55 +-
python/dolfin/fem/problem.py | 95 +
python/dolfin/fem/projection.py | 13 +-
python/dolfin/fem/solvers.py | 50 +
python/dolfin/fem/solving.py | 147 +-
python/dolfin/function/argument.py | 13 +-
python/dolfin/function/constant.py | 2 +
python/dolfin/function/expression.py | 90 +-
python/dolfin/function/function.py | 61 +-
python/dolfin/function/functionspace.py | 37 +-
python/dolfin/function/jit.py | 9 +-
python/dolfin/function/specialfunctions.py | 91 +-
python/dolfin/jit/__init__.py | 2 +-
python/dolfin/jit/jit.py | 99 +-
python/dolfin/jit/pybind11jit.py | 46 +-
python/dolfin/la/__init__.py | 50 +-
python/dolfin/la/solver.py | 72 +
python/dolfin/mesh/__init__.py | 3 +
python/dolfin/mesh/ale.py | 38 +-
python/dolfin/mesh/meshfunction.py | 59 +-
python/dolfin/mesh/subdomain.py | 29 +-
python/dolfin/mesh/svgtools.py | 32 +-
python/dolfin/multistage/__init__.py | 8 +-
python/dolfin/multistage/factorize.py | 18 +-
python/dolfin/multistage/multistagescheme.py | 203 +-
python/dolfin/multistage/multistagesolvers.py | 1 +
python/dolfin/multistage/rushlarsenschemes.py | 74 +-
python/dolfin/parameter/__init__.py | 13 +-
python/dolfin_utils/meshconvert/meshconvert.py | 2 +-
python/dolfin_utils/test/fixtures.py | 80 +-
python/setup.cfg | 2 +
python/setup.py | 10 +-
.../src/MPICommWrapper.cpp | 28 +-
.../src/MPICommWrapper.h | 39 +-
python/src/adaptivity.cpp | 8 +-
python/src/ale.cpp | 2 -
python/src/casters.h | 3 +-
python/src/common.cpp | 165 +-
python/src/dolfin.cpp | 4 +-
python/src/fem.cpp | 46 +-
python/src/function.cpp | 29 +-
python/src/generation.cpp | 101 +-
python/src/geometry.cpp | 31 +-
python/src/io.cpp | 23 +-
python/src/la.cpp | 339 +-
python/src/log.cpp | 23 +-
python/src/mesh.cpp | 112 +-
python/src/mpi_casters.h | 170 +-
python/src/multistage.cpp | 4 +-
python/src/nls.cpp | 22 +-
python/src/parameter.cpp | 21 +-
python/src/petsc_casters.h | 147 +-
scripts/dolfin-order/mesh0.xml.gz | Bin 312 -> 0 bytes
scripts/dolfin-order/mesh1.xml.gz | Bin 247 -> 0 bytes
scripts/dolfin-plot/mesh.xml.gz | Bin 20894 -> 0 bytes
shippable.yml | 22 -
site-packages/dolfin/common/plotting.py | 11 +-
.../dolfin/compilemodules/compilemodule.py | 2 +-
site-packages/dolfin/fem/assembling.py | 16 +-
site-packages/dolfin/fem/form.py | 2 +
site-packages/dolfin/fem/interpolation.py | 22 +-
site-packages/dolfin/fem/norms.py | 109 +-
.../dolfin/functions/multimeshfunction.py | 67 +-
site-packages/dolfin/functions/specialfunctions.py | 89 +-
site-packages/dolfin_utils/meshconvert/abaqus.py | 2 +-
.../dolfin_utils/meshconvert/meshconvert.py | 7 +-
site-packages/dolfin_utils/test/fixtures.py | 26 +-
test/README | 11 -
test/regression/test.py | 2 +
test/unit/CMakeLists.txt | 32 -
test/unit/README | 3 -
test/unit/cpp/CMakeLists.txt | 116 +-
test/unit/cpp/catch/catch.hpp | 11545 +++++++++++++++++++
test/unit/cpp/common/SubSystemsManager.cpp | 29 +-
test/unit/cpp/function/Expression.cpp | 99 +-
test/unit/cpp/geometry/ConvexTriangulation.cpp | 287 +
test/unit/cpp/io/XMLMeshData.cpp | 80 +-
test/unit/cpp/io/XMLMeshValueCollection.cpp | 23 +-
test/unit/cpp/la/LinearOperator.cpp | 111 +-
test/unit/cpp/la/Vector.cpp | 257 +-
test/unit/cpp/main.cpp | 2 +
test/unit/cpp/mesh/Mesh.cpp | 427 +-
test/unit/cpp/mesh/MeshColoring.cpp | 70 +-
test/unit/cpp/mesh/MeshFunction.cpp | 93 +-
test/unit/cpp/mesh/MeshValueCollection.cpp | 245 +-
test/unit/cpp/mesh/MultiMesh.cpp | 91 +
test/unit/cpp/multimesh/MultiMesh.cpp | 307 -
test/unit/cpp/parameter/Parameters.cpp | 56 +-
test/unit/pytest.ini | 3 +
test/unit/python/adaptivity/test_error_control.py | 2 -
test/unit/python/adaptivity/test_time_series.py | 2 -
test/unit/python/ale/test_harmonic_smoothing.py | 6 +-
test/unit/python/common/test_mpi.py | 52 +
test/unit/python/fem/test_assembler.py | 19 +-
test/unit/python/fem/test_dirichlet_bc.py | 16 +-
test/unit/python/fem/test_discrete_operators.py | 6 +-
test/unit/python/fem/test_dofmap.py | 138 +-
test/unit/python/fem/test_dp_assemble.py | 16 +-
test/unit/python/fem/test_finite_element.py | 10 +-
test/unit/python/fem/test_form.py | 14 +-
.../fem/test_interior_facet_integral_sides.py | 4 +-
test/unit/python/fem/test_local_assembler.py | 2 -
test/unit/python/fem/test_local_solver.py | 4 +-
test/unit/python/fem/test_manifolds.py | 2 -
test/unit/python/fem/test_petsc_transfer_matrix.py | 2 -
test/unit/python/fem/test_point_source.py | 8 +-
test/unit/python/fem/test_solving.py | 2 -
.../python/fem/test_symbolic_geometry_assembly.py | 343 +-
test/unit/python/fem/test_system_assembler.py | 18 +-
test/unit/python/fem/test_variational_problem.py | 8 +-
test/unit/python/function/test_constant.py | 16 +-
.../function/test_constrained_function_space.py | 2 -
test/unit/python/function/test_expression.py | 12 +-
test/unit/python/function/test_function.py | 27 +-
.../unit/python/function/test_function_assigner.py | 40 +-
test/unit/python/function/test_function_space.py | 28 +-
.../python/function/test_lagrange_interpolator.py | 2 -
.../function/test_nonmatching_interpolation.py | 2 -
.../unit/python/function/test_special_functions.py | 2 -
.../unit/python/geometry/test_bounding_box_tree.py | 11 +-
.../python/geometry/test_collision_detection.py | 244 +-
.../geometry/test_collision_segment_segment.py | 137 +
test/unit/python/geometry/test_coordinates.py | 2 -
test/unit/python/geometry/test_geometry_issues.py | 163 +
test/unit/python/geometry/test_intersection.py | 8 +-
.../geometry/test_intersection_construction.py | 323 +
.../geometry/test_intersection_triangulation.py | 174 -
test/unit/python/geometry/test_issues.py | 53 -
test/unit/python/geometry/test_point.py | 11 +-
test/unit/python/graph/test_graph_build.py | 2 -
test/unit/python/io/test_HDF5.py | 12 +-
test/unit/python/io/test_HDF5_attribute.py | 2 -
test/unit/python/io/test_HDF5_series.py | 4 +-
test/unit/python/io/test_SVG.py | 2 -
test/unit/python/io/test_X3D.py | 10 +-
test/unit/python/io/test_XDMF.py | 84 +-
test/unit/python/io/test_XDMF_cell_output.py | 2 +-
test/unit/python/io/test_XMLFunction.py | 3 +-
test/unit/python/io/test_XML_mesh.py | 2 -
test/unit/python/io/test_XML_mesh_function.py | 2 -
.../python/io/test_XML_mesh_value_collection.py | 2 -
test/unit/python/io/test_XML_table.py | 2 -
test/unit/python/io/test_XML_vector.py | 2 -
test/unit/python/io/test_vtk.py | 27 +-
test/unit/python/jit/test_jit.py | 162 +-
test/unit/python/la/test_krylov_solver.py | 2 -
test/unit/python/la/test_la_basic.py | 14 +-
test/unit/python/la/test_linear_operator.py | 8 +-
test/unit/python/la/test_lu_solver.py | 7 +-
test/unit/python/la/test_matrix.py | 64 +-
test/unit/python/la/test_mg_solver.py | 5 +-
test/unit/python/la/test_nullspace.py | 2 -
test/unit/python/la/test_petsc4py.py | 97 +
test/unit/python/la/test_scalar.py | 2 -
test/unit/python/la/test_slepc_solver.py | 15 +-
test/unit/python/la/test_solve.py | 2 -
test/unit/python/la/test_tensor_layout.py | 2 -
test/unit/python/la/test_vector.py | 35 +-
.../unit/python/log/test_log.py | 19 +-
test/unit/python/math/test_math.py | 2 -
test/unit/python/mesh/test_boundary_mesh.py | 8 +-
test/unit/python/mesh/test_cell.py | 6 +-
test/unit/python/mesh/test_edge.py | 2 -
test/unit/python/mesh/test_face.py | 2 -
.../unit/python/mesh/test_facet.py | 26 +-
test/unit/python/mesh/test_ghost_mesh.py | 2 -
.../unit/python/mesh/test_manifold_point_search.py | 7 +-
test/unit/python/mesh/test_mesh.py | 119 +-
test/unit/python/mesh/test_mesh_coloring.py | 0
test/unit/python/mesh/test_mesh_data.py | 2 -
test/unit/python/mesh/test_mesh_editor.py | 2 -
test/unit/python/mesh/test_mesh_function.py | 18 +-
test/unit/python/mesh/test_mesh_iterator.py | 2 -
test/unit/python/mesh/test_mesh_markers.py | 2 -
test/unit/python/mesh/test_mesh_quality.py | 2 -
test/unit/python/mesh/test_mesh_transformation.py | 2 -
.../unit/python/mesh/test_mesh_value_collection.py | 10 +-
.../python/mesh/test_multi_mesh_integration.py | 113 -
.../mesh/test_periodic_boundary_computation.py | 2 -
test/unit/python/mesh/test_sub_domain.py | 32 +-
test/unit/python/mesh/test_sub_mesh.py | 6 +-
.../unit/python/meshconvert/test_mesh_converter.py | 8 +-
test/unit/python/multimesh/test_compression.py | 103 +
test/unit/python/multimesh/test_interface_area.py | 139 +
test/unit/python/multimesh/test_multimesh.py | 58 +-
.../python/multimesh/test_multimesh_cell_types.py | 94 +
.../multimesh/test_multimesh_coefficients.py | 113 +
.../multimesh/test_multimesh_initialization.py | 31 +-
.../unit/python/multimesh/test_multimesh_issues.py | 69 +
test/unit/python/multimesh/test_multimesh_solve.py | 125 +
test/unit/python/multimesh/test_volume.py | 206 +
test/unit/python/multistage/test_RK_solver.py | 8 +-
.../multistage/test_point_integral_solver.py | 2 -
test/unit/python/nls/test_PETScSNES_solver.py | 2 -
test/unit/python/nls/test_PETScTAOSolver.py | 2 -
.../python/nls/test_TAO_linear_bound_solver.py | 2 -
.../test_solve_result_against_reference.py | 5 +-
test/unit/python/parameter/test_parameters.py | 4 +-
.../test_assembly_derivatives.py | 2 -
.../ufl-jit-assemble-chain/test_form_operations.py | 2 -
422 files changed, 32389 insertions(+), 9006 deletions(-)
create mode 100644 cmake/modules/FindGMP.cmake
create mode 100644 cmake/modules/FindMPFR.cmake
create mode 100644 demo/undocumented/multimesh-3d/cpp/CMakeLists.txt
create mode 100644 demo/undocumented/multimesh-3d/cpp/MultiMeshH10Norm.ufl
create mode 100644 demo/undocumented/multimesh-3d/cpp/MultiMeshL2Norm.ufl
copy demo/undocumented/{multimesh-poisson => multimesh-3d}/cpp/MultiMeshPoisson.ufl (90%)
create mode 100644 demo/undocumented/multimesh-3d/cpp/main.cpp
copy {bench/function/evaluation => demo/undocumented/multimesh-poisson}/cpp/P1.ufl (94%)
create mode 100644 demo/undocumented/multimesh-quadrature/cpp/README
rename demo/undocumented/{multimesh => multimesh-quadrature}/propeller_2d_coarse.xml.gz (100%)
rename demo/undocumented/{multimesh => multimesh-quadrature}/propeller_2d_fine.xml.gz (100%)
create mode 100644 demo/undocumented/multimesh-quadrature/python/demo_multimesh-quadrature.py
delete mode 100644 demo/undocumented/multimesh-stokes/cpp/Stokes.ufl
delete mode 100644 demo/undocumented/multimesh-stokes/cpp/reference.h
delete mode 100644 demo/undocumented/multimesh/python/demo_multimesh.py
delete mode 100644 dolfin/generation/UnitHexMesh.cpp
delete mode 100644 dolfin/generation/UnitHexMesh.h
delete mode 100644 dolfin/generation/UnitQuadMesh.cpp
delete mode 100644 dolfin/generation/UnitQuadMesh.h
create mode 100644 dolfin/geometry/CGALExactArithmetic.h
delete mode 100644 dolfin/geometry/CollisionDetection.cpp
delete mode 100644 dolfin/geometry/CollisionDetection.h
create mode 100644 dolfin/geometry/CollisionPredicates.cpp
create mode 100644 dolfin/geometry/CollisionPredicates.h
create mode 100644 dolfin/geometry/ConvexTriangulation.cpp
create mode 100644 dolfin/geometry/ConvexTriangulation.h
create mode 100644 dolfin/geometry/GeometryDebugging.cpp
create mode 100644 dolfin/geometry/GeometryDebugging.h
create mode 100644 dolfin/geometry/GeometryPredicates.cpp
create mode 100644 dolfin/geometry/GeometryPredicates.h
create mode 100644 dolfin/geometry/GeometryTools.h
create mode 100644 dolfin/geometry/IntersectionConstruction.cpp
create mode 100644 dolfin/geometry/IntersectionConstruction.h
delete mode 100644 dolfin/geometry/IntersectionTriangulation.cpp
delete mode 100644 dolfin/geometry/IntersectionTriangulation.h
create mode 100644 dolfin/geometry/predicates.cpp
create mode 100644 dolfin/geometry/predicates.h
copy dolfin/{log/Event.cpp => mesh/Cell.cpp} (62%)
copy {cmake/modules => python/cmake}/FindPETSc4py.cmake (88%)
create mode 100644 python/doc/Makefile
create mode 100644 python/dolfin/fem/problem.py
create mode 100644 python/dolfin/fem/solvers.py
create mode 100644 python/dolfin/la/solver.py
create mode 100644 python/setup.cfg
copy dolfin/function/CoefficientAssigner.cpp => python/src/MPICommWrapper.cpp (65%)
copy dolfin/generation/SphericalShellMesh.h => python/src/MPICommWrapper.h (53%)
delete mode 100644 scripts/dolfin-order/mesh0.xml.gz
delete mode 100644 scripts/dolfin-order/mesh1.xml.gz
delete mode 100644 scripts/dolfin-plot/mesh.xml.gz
delete mode 100644 shippable.yml
delete mode 100644 test/unit/CMakeLists.txt
create mode 100644 test/unit/cpp/catch/catch.hpp
create mode 100644 test/unit/cpp/geometry/ConvexTriangulation.cpp
create mode 100644 test/unit/cpp/main.cpp
create mode 100644 test/unit/cpp/mesh/MultiMesh.cpp
delete mode 100644 test/unit/cpp/multimesh/MultiMesh.cpp
create mode 100644 test/unit/python/common/test_mpi.py
create mode 100755 test/unit/python/geometry/test_collision_segment_segment.py
create mode 100755 test/unit/python/geometry/test_geometry_issues.py
create mode 100755 test/unit/python/geometry/test_intersection_construction.py
delete mode 100755 test/unit/python/geometry/test_intersection_triangulation.py
delete mode 100755 test/unit/python/geometry/test_issues.py
create mode 100644 test/unit/python/la/test_petsc4py.py
copy demo/undocumented/elementplot/python/demo_elementplot.py => test/unit/python/log/test_log.py (68%)
mode change 100755 => 100644 test/unit/python/mesh/test_boundary_mesh.py
mode change 100755 => 100644 test/unit/python/mesh/test_cell.py
mode change 100755 => 100644 test/unit/python/mesh/test_edge.py
mode change 100755 => 100644 test/unit/python/mesh/test_face.py
copy demo/undocumented/block-matrix/cpp/StiffnessMatrix.ufl => test/unit/python/mesh/test_facet.py (61%)
mode change 100755 => 100644 test/unit/python/mesh/test_ghost_mesh.py
mode change 100755 => 100644 test/unit/python/mesh/test_manifold_point_search.py
mode change 100755 => 100644 test/unit/python/mesh/test_mesh.py
mode change 100755 => 100644 test/unit/python/mesh/test_mesh_coloring.py
mode change 100755 => 100644 test/unit/python/mesh/test_mesh_data.py
mode change 100755 => 100644 test/unit/python/mesh/test_mesh_editor.py
mode change 100755 => 100644 test/unit/python/mesh/test_mesh_function.py
mode change 100755 => 100644 test/unit/python/mesh/test_mesh_iterator.py
mode change 100755 => 100644 test/unit/python/mesh/test_mesh_markers.py
mode change 100755 => 100644 test/unit/python/mesh/test_mesh_quality.py
mode change 100755 => 100644 test/unit/python/mesh/test_mesh_transformation.py
mode change 100755 => 100644 test/unit/python/mesh/test_mesh_value_collection.py
delete mode 100755 test/unit/python/mesh/test_multi_mesh_integration.py
mode change 100755 => 100644 test/unit/python/mesh/test_periodic_boundary_computation.py
mode change 100755 => 100644 test/unit/python/mesh/test_sub_domain.py
mode change 100755 => 100644 test/unit/python/mesh/test_sub_mesh.py
create mode 100644 test/unit/python/multimesh/test_compression.py
create mode 100755 test/unit/python/multimesh/test_interface_area.py
create mode 100644 test/unit/python/multimesh/test_multimesh_cell_types.py
create mode 100644 test/unit/python/multimesh/test_multimesh_coefficients.py
copy demo/undocumented/waveguide/cpp/Forms.ufl => test/unit/python/multimesh/test_multimesh_initialization.py (60%)
mode change 100644 => 100755
create mode 100755 test/unit/python/multimesh/test_multimesh_issues.py
create mode 100644 test/unit/python/multimesh/test_multimesh_solve.py
create mode 100755 test/unit/python/multimesh/test_volume.py
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