Bug#638236: /usr/lib/liblapack.so.3gf: undefined symbol: ATL_chem

[Jonathan Nieder]

Package: libatlas3gf-base
Version: 3.8.4-3
Severity: important

Hi,

Trying to build r-base:

| make[5]: Entering directory `/tmp/r-base-2.13.1/src/library/grDevices'
| Warning in solve.default(rgb) :
|   unable to load shared object '/tmp/r-base-2.13.1/modules//lapack.so':
|   /usr/lib/liblapack.so.3gf: undefined symbol: ATL_chemv
| Error in solve.default(rgb) : lapack routines cannot be loaded
| Error: unable to load R code in package 'grDevices'
| Execution halted
| make[5]: *** [mklazy] Error 1

Hmm.  So:

| $ readlink /etc/alternatives/liblapack.so.3gf
| /usr/lib/atlas-base/atlas/liblapack.so.3gf
| $ dpkg-query -S /usr/lib/atlas-base/atlas/liblapack.so.3gf
| libatlas3gf-base: /usr/lib/atlas-base/atlas/liblapack.so.3gf
| # dpkg-query -W libatlas3gf-base
| libatlas3gf-base	3.8.4-3

And:

| $ python
| Python 2.7.2+ (default, Aug 16 2011, 09:23:59) 
| [GCC 4.6.1] on linux2
| Type "help", "copyright", "credits" or "license" for more information.
| >>> import numpy
| Traceback (most recent call last):
[...]
|     from numpy.linalg import lapack_lite
| ImportError: /usr/lib/liblapack.so.3gf: undefined symbol: ATL_chemv

Severity is just important because I don't know if it's just me.
Ideas?

Jonathan

| $ ls -l /etc/alternatives/libblas.so.3gf
| /usr/lib/openblas-base/libopenblas.so.0

-- System Information:
Debian Release: wheezy/sid
  APT prefers experimental
  APT policy: (990, 'experimental'), (500, 'proposed-updates'), (500, 'unstable'), (500, 'testing'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.0.0-1-amd64 (SMP w/2 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash

Versions of packages libatlas3gf-base depends on:
ii  libc6                         2.13-16    Embedded GNU C Library: Shared lib
ii  libgcc1                       1:4.6.1-7  GCC support library
ii  libgfortran3                  4.6.1-7    Runtime library for GNU Fortran ap

libatlas3gf-base recommends no packages.

Versions of packages libatlas3gf-base suggests:
ii  liblapack3gf                  3.3.1-1    library of linear algebra routines

-- no debconf information