Bug#631589: python-dolfin: python -c "import dolfin" fails with MPI error

LUK ShunTim shuntim.luk at polyu.edu.hk
Sat Jun 25 05:57:14 UTC 2011


Package: python-dolfin
Version: 0.9.11-1+b1
Severity: grave
Justification: renders package unusable

Hi,

Here's a transcript.

$ python -c "import dolfin"
*** The MPI_comm_size() function was called before MPI_INIT was invoked.
*** This is disallowed by the MPI standard.
*** Your MPI job will now abort.

Same error as reported in
https://answers.launchpad.net/dolfin/+question/152620
which was fixed in ubuntu ppa.

Please upload a fixed package for debian as well.

Regards,
ST
-- System Information:
Debian Release: wheezy/sid
  APT prefers unstable
  APT policy: (900, 'unstable'), (500, 'gutsy')
Architecture: amd64 (x86_64)

Kernel: Linux 2.6.39-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_HK.UTF-8, LC_CTYPE=en_US.UTF8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash

Versions of packages python-dolfin depends on:
ii  libamd2.2.0      1:3.4.0-2               approximate minimum degree orderin
ii  libarmadillo2    1.99.3+dfsg-1           streamlined C++ linear algebra lib
ii  libarpack2       2.1+parpack96.dfsg-3+b1 Fortran77 subroutines to solve lar
ii  libatlas3gf-base 3.8.4-3                 Automatically Tuned Linear Algebra
ii  libblas3gf [libb 1.2-8                   Basic Linear Algebra Reference imp
ii  libboost-filesys 1.46.1-6                filesystem operations (portable pa
ii  libboost-program 1.46.1-6                program options library for C++
ii  libboost-system1 1.46.1-6                Operating system (e.g. diagnostics
ii  libboost-thread1 1.46.1-6                portable C++ multi-threading
pn  libc6            <none>                  (no description available)
ii  libcamd2.2.0     1:3.4.0-2               symmetric approximate minimum degr
ii  libccolamd2.7.1  1:3.4.0-2               constrained column approximate lib
ii  libcholmod1.7.1  1:3.4.0-2               sparse Cholesky factorization libr
ii  libcolamd2.7.1   1:3.4.0-2               column approximate minimum degree
ii  libdolfin0       0.9.11-1+b1             shared libraries for DOLFIN
ii  libdolfin0-dev   0.9.11-1+b1             Shared links and header files for
ii  libgcc1          1:4.6.0-14              GCC support library
ii  libgomp1         4.6.0-14                GCC OpenMP (GOMP) support library
ii  liblapack3gf [li 3.3.0-4                 library of linear algebra routines
ii  libopenmpi1.3    1.4.3-2.1               high performance message passing l
ii  libpetsc3.1      3.1.dfsg-11             Shared libraries for version 3.1 o
ii  libptscotch-5.1  5.1.11.dfsg-7           MPI programs and libraries for gra
ii  libpython2.6     2.6.7-1                 Shared Python runtime library (ver
ii  libpython2.7     2.7.2-1                 Shared Python runtime library (ver
ii  libslepc3.1      3.1-p6.dfsg-1           Scalable Library for Eigenvalue Pr
ii  libstdc++6       4.6.0-14                GNU Standard C++ Library v3
ii  libtrilinos      10.4.0.dfsg-1           parallel solver libraries within a
ii  libumfpack5.4.0  1:3.4.0-2               sparse LU factorization library
ii  libxml2          2.7.8.dfsg-3            GNOME XML library
ii  python           2.6.6-14                interactive high-level object-orie
ii  python-ffc       0.9.10-2                compiler for finite element variat
ii  python-instant   0.9.10-1                simple inlining of C / C++ code in
ii  python-numpy     1:1.5.1-2+b1            Numerical Python adds a fast array
ii  python-pytrilino 10.4.0.dfsg-1           parallel solver libraries within a
ii  python-ufc       2.0.1-1                 Python utilities (templates) for g
ii  python-ufl       0.9.1-1                 unified language for form-compiler
ii  python-viper     0.4.7-2                 minimalistic scientific plotter an
ii  python2.6        2.6.7-1                 An interactive high-level object-o
ii  python2.7        2.7.2-1                 An interactive high-level object-o
ii  swig2.0          2.0.4-2                 Generate scripting interfaces to C
ii  zlib1g           1:1.2.3.4.dfsg-3        compression library - runtime

python-dolfin recommends no packages.

Versions of packages python-dolfin suggests:
ii  dolfin-doc                    0.9.11-1   Documentation and demo programs fo

-- no debconf information





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