Bug#640566: slicer: FTBFS: make[3]: *** No rule to make target `/usr/lib64/libpq.so', needed by `bin/libmimxAdapter.so.3.6.3'. Stop.

[Mònica Ramírez Arceda]

Source: slicer
Version: 3.6.3~svn16592-1
Severity: serious
Tags: wheezy sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20110902 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part:
> In file included from /usr/include/gdcm-2.0/gdcmFile.h:19:0,
>                  from /usr/include/gdcm-2.0/gdcmSerieHelper.h:20,
>                  from /usr/include/InsightToolkit/IO/itkGDCMSeriesFileNames.h:24,
>                  from /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/itkIO.h:19,
>                  from /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelper.h:29,
>                  from /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelper.cxx:1:
> /usr/include/gdcm-2.0/gdcmDataSet.h: In member function 'gdcm::VL gdcm::DataSet::GetLength() const [with TDE = gdcm::ExplicitDataElement]':
> /usr/include/gdcm-2.0/gdcmFileMetaInformation.h:105:70:   instantiated from here
> /usr/include/gdcm-2.0/gdcmDataSet.h:119:10: warning: variable 'len' set but not used [-Wunused-but-set-variable]
> In file included from /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelper.cxx:2:0:
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h: In member function 'void itk::BRAINSFitHelperTemplate<FixedImageType, MovingImageType>::SetTransformType(std::vector<std::basic_string<char> >) [with FixedImageType = itk::Image<float, 3u>, MovingImageType = itk::Image<float, 3u>]':
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelper.cxx:179:5:   instantiated from here
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h:160:3: warning: variable 'fromIt' set but not used [-Wunused-but-set-variable]
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h:160:3: warning: variable 'toIt' set but not used [-Wunused-but-set-variable]
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h: In member function 'void itk::BRAINSFitHelperTemplate<FixedImageType, MovingImageType>::SetNumberOfIterations(std::vector<int>) [with FixedImageType = itk::Image<float, 3u>, MovingImageType = itk::Image<float, 3u>]':
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelper.cxx:179:5:   instantiated from here
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h:140:3: warning: variable 'fromIt' set but not used [-Wunused-but-set-variable]
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h:140:3: warning: variable 'toIt' set but not used [-Wunused-but-set-variable]
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h: In member function 'void itk::BRAINSFitHelperTemplate<FixedImageType, MovingImageType>::SetMinimumStepLength(std::vector<double, std::allocator<double> >) [with FixedImageType = itk::Image<float, 3u>, MovingImageType = itk::Image<float, 3u>]':
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelper.cxx:179:5:   instantiated from here
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h:141:3: warning: variable 'fromIt' set but not used [-Wunused-but-set-variable]
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h:141:3: warning: variable 'toIt' set but not used [-Wunused-but-set-variable]
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h: In member function 'void itk::BRAINSFitHelperTemplate<FixedImageType, MovingImageType>::SetSplineGridSize(std::vector<int>) [with FixedImageType = itk::Image<float, 3u>, MovingImageType = itk::Image<float, 3u>]':
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelper.cxx:179:5:   instantiated from here
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h:169:3: warning: variable 'fromIt' set but not used [-Wunused-but-set-variable]
> /build/slicer-JGsvZf/slicer-3.6.3~svn16592/Applications/CLI/BRAINSTools/BRAINSCommonLib/BRAINSFitHelperTemplate.h:169:3: warning: variable 'toIt' set but not used [-Wunused-but-set-variable]
> [  4%] Building CXX object Libs/FreeSurfer/CMakeFiles/FreeSurfer.dir/vtkFSIOTcl.cxx.o
> make[3]: Leaving directory `/build/slicer-JGsvZf/slicer-3.6.3~svn16592/obj-x86_64-linux-gnu'
> make[2]: *** [Modules/Meshing/Adapter/CMakeFiles/mimxAdapter.dir/all] Error 2

The full build log is available from:
   http://people.debian.org/~lucas/logs/2011/09/02/slicer_3.6.3~svn16592-1_lsid64.buildlog

A list of current common problems and possible solutions is available at 
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot.  Internet was not
accessible from the build systems.