[Debichem-commits] [SCM] massXpert mass spectrometry suite: debian packaging branch, upstream, updated. debian/2.0.6

Filippo Rusconi (Debian Maintainer) rusconi-debian at laposte.net
Mon Oct 5 20:37:54 UTC 2009


The following commit has been merged in the upstream branch:
commit ddb5c39dd75c74b50f3bb5dbf944747161eb770f
Author: Filippo Rusconi (Debian Maintainer) <rusconi-debian at laposte.net>
Date:   Mon Sep 21 18:04:27 2009 +0200

    Removed debug messages.

diff --git a/TODO b/TODO
index 11e0802..2769442 100644
--- a/TODO
+++ b/TODO
@@ -8,12 +8,10 @@ XpertCalc should be able to store formulas or masses.
 Should be able to open sequence files not .mxp, and if bad chars found, open the purification dialog.
 
 /tmp/buildd/massxpert-2.0.4/lib/polymer.cpp 1373 Failed to open file "/usr/share/massxpert/pol-seqs/protein-1-letter.mxp" for writing.
-C:\devel\massxpert\gui\mzLabInputOligomerTreeView.cpp debug messages to be removed.
 Update usermanual with Catalogue 1 in the xpm module.
 Should be possible to paste in to m/z,z pair lists without drag and dropping.
 Should be possible to remove selected items from a m/z,z pair list
 It should be possible to define the formula of a monomer on the basis of distinct groups (subformulas) which bear a name so that they can be referred to by name when defining fragmentation patterns. This would give enormous flexibility to define real patterns amongst monomers that fragment, like for example saying loose the side chain, or proton loss in ribose, or oxidation in ring...
-monomerDefDlg.cpp:    qDebug() << "new regExp:" << regExp;
 Verify that fragmentation computes the proper masses of fragments depending on the ionization.
 Upon fragmentation, the ionization rule should be re-read from the XpertEdit window so that ionizations might change live. For example, switch from negative to positive mode in mass spec of oligonucleotides.
 The definition of the fragmentation pattern might need some variable like "add the ionization rule".
diff --git a/gui/monomerDefDlg.cpp b/gui/monomerDefDlg.cpp
index c1d0218..179d7d8 100644
--- a/gui/monomerDefDlg.cpp
+++ b/gui/monomerDefDlg.cpp
@@ -499,7 +499,7 @@ namespace massXpert
     // codeLength value.
 
     QString regExp = QString("[A-Z][a-z]{0,%1}").arg(value - 1);
-    qDebug() << "new regExp:" << regExp;
+    //    qDebug() << "new regExp:" << regExp;
   
     QRegExp codeRegExp(regExp);
     QValidator *validator = new QRegExpValidator(codeRegExp, this);
diff --git a/gui/mzLabInputOligomerTreeView.cpp b/gui/mzLabInputOligomerTreeView.cpp
index 99ccc93..346fe65 100644
--- a/gui/mzLabInputOligomerTreeView.cpp
+++ b/gui/mzLabInputOligomerTreeView.cpp
@@ -491,8 +491,8 @@ namespace massXpert
 			      }
 			    
 
-			    qDebug() << __FILE__ << __LINE__
-				     << "charge:" << oligomer->charge();
+// 			    qDebug() << __FILE__ << __LINE__
+// 				     << "charge:" << oligomer->charge();
 			
 			    oligomer->ionizeRule().debugPutStdErr();
 			
@@ -556,8 +556,8 @@ namespace massXpert
 						(totalCharge ? true : false),
 						-1, -1);
 
-				qDebug() << __FILE__ << __LINE__
-					 << "charge:" << oligomer->charge();
+// 				qDebug() << __FILE__ << __LINE__
+// 					 << "charge:" << oligomer->charge();
 				
 				oligomer->ionizeRule().debugPutStdErr();
 
@@ -588,10 +588,10 @@ namespace massXpert
 							    tempIonizeRule,
 							    false, -1, -1);
 				    
-				    qDebug() << __FILE__ << __LINE__
-					     << "charge:" 
-					     << static_cast<FragmentOligomer *>(oligomer)->
-				      charge();
+// 				    qDebug() << __FILE__ << __LINE__
+// 					     << "charge:" 
+// 					     << static_cast<FragmentOligomer *>(oligomer)->
+// 				      charge();
 
 				    oligomer->ionizeRule().debugPutStdErr();
 				    
@@ -638,10 +638,10 @@ namespace massXpert
 						    tempIonizeRule,
 						    true, -1, -1);
 				    
-				    qDebug() << __FILE__ << __LINE__
-					     << "charge:" 
-					     << static_cast<FragmentOligomer *>(oligomer)->
-				      charge();
+// 				    qDebug() << __FILE__ << __LINE__
+// 					     << "charge:" 
+// 					     << static_cast<FragmentOligomer *>(oligomer)->
+// 				      charge();
 				    
 				    oligomer->ionizeRule().debugPutStdErr();
 				    

-- 
massXpert mass spectrometry suite: debian packaging



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