[Debichem-commits] [SCM] massXpert mass spectrometry suite: debian packaging branch, debian, updated. upstream/3.2.0-1-g5564507

[Filippo Rusconi (Debian Maintainer)]

The following commit has been merged in the debian branch:
commit 9cf679179fa4b8aaff1735df3821bd5953c11e24
Author: Filippo Rusconi (Debian Maintainer) <rusconi-debian at laposte.net>
Date:   Mon Oct 5 21:30:38 2009 +0200

    debian/changelog: update version and log.

diff --git a/debian/changelog b/debian/changelog
index 0e87d99..084e311 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,8 +1,84 @@
-massxpert (2.0.6-1) UNRELEASED; urgency=low
+massxpert (2.0.6.-1) unstable; urgency=low
+  
+  * Upstream release:
+  
+    - Fixes to nroff formatting of the man pages (thanks to Daniel Leidert
+    for suggestions);
 
-  * 
+    - XpertCalc: added possibility to insert formulas in the formula line
+    edit by Ctrl-clicking buttons in the chemical keypad;
+  
+    - XpertCalc: added possibility to surround formulas with spaces for
+    much better readability in case of complex structures. This is
+    performed by Shit-Ctrl-cliking on the chemical pad buttons;
 
- -- Filippo Rusconi <rusconi-debian at laposte.net>  Tue, 08 Sep 2009 23:25:18 +0200
+    - XpertCalc: automatically seed m/z calculation dialog window with
+    masses from the XpertCalc main window;
+    
+    - XpertEdit: bug fix in the sequence editor's feedback to the user
+    upon entering a bad monomer code character. When a new valid character
+    is entered this old error message is removed;
+  
+    - XpertCalc: added lots of useful buttons to the dna chemical pad
+    configuration file;
+    
+    - Added bibliographical reference to the massXpert paper in
+    _Bioinformatics_ to the man pages;
+    
+    - XpertCalc: added possibility to store formula in a drop-down list so
+    as to be able to recall them in ulterior calculations;
+    
+    - XpertCalc: implemented new feature by which it is possible to set a
+    title to a formula like the following : "initial-dimer" C5H6O9P3,
+    which will be interpreted as formula "C5H6O9P3".
+    
+    - Sequence editing plugins: added possibility to perform more
+    sophisticated translation, like from codon to 1-letter code or from
+    codon to 3-letters code (protein chemistry);
+    
+    - XpertEdit: the tool box (available monomers/mass calculation engine
+    configuration) now saves its position;
+    
+    - Improved the CMake-based build system to automatically build the
+    binary and the data if nothing is specified on the configuration
+    command line (usermanual is not built by default; thanks to Pere
+    Constans for reporting);
+    
+    - Bunch of code tidying and memory leaks fixing (thanks to cppcheck,
+    as suggested by Pere Constans);
+    
+    - XpertEdit: fixed wrong behaviour in the whole/selected sequence
+    logic in the mass search dialog window;
+    
+    - XpertEdit: fixed the multi-character code disambiguation mechanism
+    in the sequence editor's available codes tool box widget: it's
+    triggered by hitting Ctrl-Enter;
+    
+    - Xpertedit/XpertDef: improved feedback to the user on file save
+    operation errors;
+    
+    - XpertEdit/XpertDef: added possibility to show non-*.mxp/non-*.xml
+    files in the openfile dialogs;
+    
+    - XpertEdit: improved fragmentation with multiply-charged fragments:
+    When there are multiply-charged fragments, the mass now takes into
+    account the ionization rule that sits in the sequence editor windows's
+    calculation engine configuration.
+    
+    - Added Doxygen configuration file. Docs generated outside of the
+    source tree.
+    
+    - XpertEdit: fix bug in elementalComposition() that would fail when
+    count is negative.  Added simplify() function that calls
+    elementalComposition() in turn.  Also fixed the way atomCount objects
+    are added to the list of such objects : when an atomCount object
+    reaches a 0-count, it gets removed from the list.
+
+    - XpertCalc: added possibility to simplify a complex set of formulas
+    into a single factorized formula.
+    
+  
+ -- Filippo Rusconi <rusconi-debian at laposte.net>  Mon, 05 Oct 2009 10:55:32 +0200
 
 
 massxpert (2.0.5-1) unstable; urgency=low

-- 
massXpert mass spectrometry suite: debian packaging